Rh5CG499500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000739
Physical Location & Seq
Forward (+)
69455606 .. 69458852
3247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG499500.1

Sequence Viewer

Length: 300 bp
ATGGAGGCTGCATCGGTGATGCGGCATGGTTTCAAGTCTGGCAGCGATGTGGCTTTTTCTAGGTGGCTCGTTGATGGTGAAAGGAACGAGACCACCAGTTTCCACCGTCAAAACCAATCAGTCAGCCACAAGGTGCTGGGCTTTGCTTCTTCGTTGTCTCTCTCGTCGCCTCTTCCAAACCCATTTCCTATTTTGCCAAAAAAGACCACAAAGCACATACATTTCATCGATCAGCGGCCATCCTCTCGGTCATCCATTTTAGGTGAAGTACTCTCCTTTATGAAATACATGGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.09

Weight (kDa)

10.11

Isoelectric Point (pI)

67.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 22, 235
AcoI YGGCCR 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 1 cut(s) 270
AgsI TTSAA 1 cut(s) 34
Alw26I GTCTC 2 cut(s) 83, 162
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 8, 42
AsuHPI GGTGA 3 cut(s) 28, 89, 275
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 68, 247
BcoDI GTCTC 2 cut(s) 83, 162
BfaI CTAG 1 cut(s) 60
BisI GCNGC 4 cut(s) 9, 23, 43, 236
BlsI GCNGC 4 cut(s) 10, 24, 44, 237
BmcAI AGTACT 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 294
BmsI GCATC 2 cut(s) 9, 20
Bsa29I ATCGAT 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 228
BseGI GGATG 2 cut(s) 239, 251
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 54
BseYI CCCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 228
BsmAI GTCTC 2 cut(s) 83, 162
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 2 cut(s) 22, 235
BspANI GGCC 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 96
BssMI GATC 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 177
BstF5I GGATG 2 cut(s) 239, 251
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 2 cut(s) 83, 162
BstMBI GATC 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 238
BsuTUI ATCGAT 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 239, 251
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 1 cut(s) 269
CviAII CATG 2 cut(s) 26, 289
CviJI RGCY 6 cut(s) 8, 53, 67, 126, 141, 238
CviKI_1 RGCY 6 cut(s) 8, 53, 67, 126, 141, 238
CviQI GTAC 1 cut(s) 269
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 83
FaeI CATG 2 cut(s) 29, 292
FaiI YATR 4 cut(s) 27, 218, 281, 290
FatI CATG 2 cut(s) 25, 288
Fnu4HI GCNGC 4 cut(s) 9, 23, 43, 236
FokI GGATG 2 cut(s) 226, 238
Fsp4HI GCNGC 4 cut(s) 9, 23, 43, 236
FspBI CTAG 1 cut(s) 60
GluI GCNGC 4 cut(s) 9, 23, 43, 236
GsaI CCCAGC 1 cut(s) 140
HaeIII GGCC 1 cut(s) 238
Hin1II CATG 2 cut(s) 29, 292
HphI GGTGA 3 cut(s) 28, 89, 275
Hpy99I CGWCG 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 11
Hsp92II CATG 2 cut(s) 29, 292
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 3 cut(s) 24, 109, 122
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 2 cut(s) 9, 20
MaeI CTAG 1 cut(s) 60
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 141, 164
MnlI CCTC 2 cut(s) 180, 253
MspA1I CMGCKG 1 cut(s) 235
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 29, 292
NlaIV GGNNCC 1 cut(s) 294
PkrI GCNGC 4 cut(s) 10, 24, 44, 237
PspFI CCCAGC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 294
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SatI GCNGC 4 cut(s) 9, 23, 43, 236
Sau3AI GATC 1 cut(s) 229
ScaI AGTACT 1 cut(s) 270
SetI ASST 3 cut(s) 65, 135, 265
SfaNI GCATC 2 cut(s) 9, 20
SsiI CCGC 2 cut(s) 22, 235
SspMI CTAG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 228
TaqII GACCGA 1 cut(s) 237
TatI WGTACW 1 cut(s) 268
TauI GCSGC 2 cut(s) 25, 238
TseI GCWGC 2 cut(s) 8, 42
TspDTI ATGAA 2 cut(s) 214, 296
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.