Rh7DG018000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000739
Physical Location & Seq
Forward (+)
1445950 .. 1446288
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG018000.1

Sequence Viewer

Length: 339 bp
ATGTCGGCGGTAAACCTACAATCGGAAAGGTGGGATTTTCTCTTCTCTCTGATCACTCTTCCGGTGATCGCGGTGGGCTTTGGCTTCATCGAGTTTCTGTTTTCTGCTGCATTTGGTCATCTTGTGGTGACCGGAGGCGCCTTTGCCTTATGGTCGGGGGGAACTCTCGGCGATGGTACTATGATGGCGGCTGCGAAGATGGTGCGGTATGGTTTCGAGTCTAGCAGCAATGTGGATTTGTTTAGGCGGCTCGATGGTGGTGGCACGGAGGGAGTGAGGTTAGCAAGCCTTCTGGCTGTTTCATGTTTCTACCAACAACGTTTGAACCAGGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.04

Weight (kDa)

5.18

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccII CGCG 1 cut(s) 71
AciI CCGC 5 cut(s) 8, 71, 188, 205, 247
AclI AACGTT 1 cut(s) 319
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 1 cut(s) 327
ApeKI GCWGC 3 cut(s) 107, 191, 225
AspLEI GCGC 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 76, 139
BanI GGYRCC 1 cut(s) 137
BbvI GCAGC 3 cut(s) 94, 178, 237
BccI CCATC 4 cut(s) 167, 178, 193, 248
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BciT130I CCWGG 1 cut(s) 329
BclI TGATCA 1 cut(s) 51
BfaI CTAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 141
BisI GCNGC 5 cut(s) 108, 189, 192, 226, 248
BlsI GCNGC 5 cut(s) 109, 190, 193, 227, 249
Bme1390I CCNGG 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 328
BsaWI WCCGGW 2 cut(s) 61, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 235
BseXI GCAGC 3 cut(s) 94, 178, 237
Bsh1236I CGCG 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 2 cut(s) 62, 132
BslI CCNNNNNNNGG 1 cut(s) 22
Bsp143I GATC 2 cut(s) 51, 66
BspACI CCGC 5 cut(s) 8, 71, 188, 205, 247
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 2 cut(s) 51, 66
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 329
Bst6I CTCTTC 2 cut(s) 47, 63
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 286
BstEII GGTNACC 1 cut(s) 127
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 54, 69
BstMBI GATC 2 cut(s) 51, 66
BstNI CCWGG 1 cut(s) 329
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 327
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 94, 178, 237
BtgZI GCGATG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 177
CviAII CATG 1 cut(s) 303
CviJI RGCY 6 cut(s) 78, 84, 191, 250, 288, 296
CviKI_1 RGCY 6 cut(s) 78, 84, 191, 250, 288, 296
CviQI GTAC 1 cut(s) 177
DinI GGCGCC 1 cut(s) 139
DpnI GATC 2 cut(s) 53, 68
DpnII GATC 2 cut(s) 51, 66
Eam1104I CTCTTC 2 cut(s) 47, 63
EarI CTCTTC 2 cut(s) 47, 63
Eco91I GGTNACC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 327
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
FaeI CATG 1 cut(s) 306
FaiI YATR 4 cut(s) 151, 182, 210, 304
FatI CATG 1 cut(s) 302
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 5 cut(s) 108, 189, 192, 226, 248
Fsp4HI GCNGC 5 cut(s) 108, 189, 192, 226, 248
FspBI CTAG 1 cut(s) 222
GlaI GCGC 1 cut(s) 139
GluI GCNGC 5 cut(s) 108, 189, 192, 226, 248
HaeII RGCGCY 1 cut(s) 141
HapII CCGG 2 cut(s) 62, 132
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 306
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 218
HpaII CCGG 2 cut(s) 62, 132
HphI GGTGA 2 cut(s) 76, 139
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 2 cut(s) 25, 51
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 306
HspAI GCGC 1 cut(s) 138
KasI GGCGCC 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 2 cut(s) 51, 66
LpnPI CCDG 4 cut(s) 75, 145, 278, 314
Lsp1109I GCAGC 3 cut(s) 94, 178, 237
MaeI CTAG 1 cut(s) 222
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 53, 68
MboI GATC 2 cut(s) 51, 66
MboII GAAGA 3 cut(s) 34, 50, 208
Mly113I GGCGCC 1 cut(s) 138
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 3 cut(s) 128, 262, 270
MspI CCGG 2 cut(s) 62, 132
MspR9I CCNGG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 1 cut(s) 71
NarI GGCGCC 1 cut(s) 138
NdeII GATC 2 cut(s) 51, 66
NlaIII CATG 1 cut(s) 306
NlaIV GGNNCC 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 127
PkrI GCNGC 5 cut(s) 109, 190, 193, 227, 249
PleI GAGTC 1 cut(s) 226
PluTI GGCGCC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 226
Psp1406I AACGTT 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 327
PspEI GGTNACC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 139
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SatI GCNGC 5 cut(s) 108, 189, 192, 226, 248
Sau3AI GATC 2 cut(s) 51, 66
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 329
SetI ASST 4 cut(s) 18, 32, 281, 322
SfoI GGCGCC 1 cut(s) 139
SsiI CCGC 5 cut(s) 8, 71, 188, 205, 247
SspDI GGCGCC 1 cut(s) 137
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 327
TaiI ACGT 1 cut(s) 322
TaqI TCGA 3 cut(s) 90, 216, 252
TauI GCSGC 2 cut(s) 191, 250
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 107, 191, 225
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 76, 291
TspGWI ACGGA 1 cut(s) 281
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.