Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

15264097 .. 15266442

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAATAAAACAGGTGTCCAATTCTGGTTGTCATCAACAGGTAGTGACCAAACCAACCACAACACAACCAGTACTTCATCCTGGTCCTCCTCGTCATCCCCATCGCCATTTTCACAACCCTCCTCCTTCCAAACCCCACAAAGAACCATGGAAGAGGTTTGGAAAGACTTCAATCTTGCCTCTCTCACTGATCCCACCACCCAAATCAGATCCTCATCCTCATCCTCCACCTCACCAATCCTCCAAATTAACCTCCCCAATGGGCCCCACCAGGGCCGCCACCACCACCCAAACTTTAGAAATATGACCCTTCAAGACTTCCTTGCCAGACCCTTTGCCCATGACTCACCAGCAGCAGCAGCCGCCTTGGTCTCCGCCGCTGCAAGCCCTCCCTCTCCTCTTCCTCCAGCCGCCCCAACTCTTCTCAGCCTGAACAATCCTGGCTCAGAGTTTCAGCTCTTTTATGCCTCTGACTCCCTCAGGCCTCCGAGCTCCGGCTTCATTGATCGATCATCAGGCAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

176

Amino Acids

18.75

Weight (kDa)

7.02

Isoelectric Point (pI)

78.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	277, 363, 375, 378, 411
AclWI	GGATC	2 cut(s)	185, 204
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	272, 494
AgsI	TTSAA	2 cut(s)	172, 314
AjnI	CCWGG	3 cut(s)	80, 270, 439
AluBI	AGCT	2 cut(s)	457, 492
AluI	AGCT	2 cut(s)	457, 492
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	185, 204
AoxI	GGCC	3 cut(s)	263, 274, 482
ApaI	GGGCCC	1 cut(s)	267
ApeKI	GCWGC	4 cut(s)	353, 356, 359, 380
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	4 cut(s)	84, 263, 264, 274
AsuHPI	GGTGA	2 cut(s)	225, 339
AvaII	GGWCC	1 cut(s)	84
AxyI	CCTNAGG	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	267
BanII	GRGCYC	2 cut(s)	267, 494
Bbv12I	GWGCWC	1 cut(s)	494
BbvI	GCAGC	4 cut(s)	365, 367, 368, 371
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	3 cut(s)	82, 272, 441
BcoDI	GTCTC	1 cut(s)	376
BisI	GCNGC	8 cut(s)	277, 354, 357, 360, 363, 378, 381, 411
BlsI	GCNGC	8 cut(s)	278, 355, 358, 361, 364, 379, 382, 412
BmcAI	AGTACT	1 cut(s)	73
Bme1390I	CCNGG	3 cut(s)	82, 272, 441
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	4 cut(s)	84, 263, 264, 274
BmiI	GGNNCC	2 cut(s)	265, 266
BmrFI	CCNGG	3 cut(s)	82, 272, 441
BpmI	CTGGAG	1 cut(s)	390
Bsa29I	ATCGAT	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	3 cut(s)	147, 271, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 494
Bse1I	ACTGG	1 cut(s)	69
Bse21I	CCTNAGG	1 cut(s)	479
Bse8I	GATNNNNATC	1 cut(s)	214
BseBI	CCWGG	3 cut(s)	82, 272, 441
BseCI	ATCGAT	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	147, 271, 366
BseGI	GGATG	4 cut(s)	77, 95, 215, 221
BseJI	GATNNNNATC	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	272, 494
BseMII	CTCAG	3 cut(s)	439, 459, 493
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	3 cut(s)	79, 112, 387
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	4 cut(s)	365, 367, 368, 371
BshFI	GGCC	3 cut(s)	265, 276, 484
BshVI	ATCGAT	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	495
BslI	CCNNNNNNNGG	2 cut(s)	272, 494
BsmAI	GTCTC	1 cut(s)	376
BsnI	GGCC	3 cut(s)	265, 276, 484
Bso31I	GGTCTC	1 cut(s)	376
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	267, 494
Bsp143I	GATC	4 cut(s)	190, 209, 505, 509
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	5 cut(s)	277, 363, 375, 378, 411
BspANI	GGCC	3 cut(s)	265, 276, 484
BspCNI	CTCAG	3 cut(s)	438, 458, 492
BspDI	ATCGAT	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	265, 266
BspPI	GGATC	2 cut(s)	185, 204
BspTNI	GGTCTC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	147, 271, 366
BssMI	GATC	4 cut(s)	190, 209, 505, 509
BssT1I	CCWWGG	2 cut(s)	147, 366
Bst2UI	CCWGG	3 cut(s)	82, 272, 441
Bst6I	CTCTTC	3 cut(s)	147, 405, 426
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	3 cut(s)	425, 445, 479
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	4 cut(s)	77, 95, 215, 221
BstKTI	GATC	4 cut(s)	193, 212, 508, 512
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	4 cut(s)	190, 209, 505, 509
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 362
BstNI	CCWGG	3 cut(s)	82, 272, 441
BstSCI	CCNGG	3 cut(s)	80, 270, 439
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	4 cut(s)	365, 367, 368, 371
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	508
Bsu36I	CCTNAGG	1 cut(s)	479
BsuRI	GGCC	3 cut(s)	265, 276, 484
BsuTUI	ATCGAT	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	4 cut(s)	77, 95, 215, 221
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	385
Cfr13I	GGNCC	4 cut(s)	84, 263, 264, 274
ClaI	ATCGAT	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	2 cut(s)	148, 341
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	3 cut(s)	425, 445, 479
DpnI	GATC	4 cut(s)	192, 211, 507, 511
DpnII	GATC	4 cut(s)	190, 209, 505, 509
Eam1104I	CTCTTC	3 cut(s)	147, 405, 426
EarI	CTCTTC	3 cut(s)	147, 405, 426
EciI	GGCGGA	1 cut(s)	364
Ecl136II	GAGCTC	1 cut(s)	492
Eco130I	CCWWGG	2 cut(s)	147, 366
Eco147I	AGGCCT	1 cut(s)	484
Eco24I	GRGCYC	2 cut(s)	267, 494
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	492
Eco81I	CCTNAGG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRII	CCWGG	3 cut(s)	80, 270, 439
EcoT14I	CCWWGG	2 cut(s)	147, 366
EcoT38I	GRGCYC	2 cut(s)	267, 494
ErhI	CCWWGG	2 cut(s)	147, 366
FaeI	CATG	2 cut(s)	151, 344
FaiI	YATR	5 cut(s)	149, 305, 342, 465, 526
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	2 cut(s)	147, 340
Fnu4HI	GCNGC	8 cut(s)	277, 354, 357, 360, 363, 378, 381, 411
FokI	GGATG	4 cut(s)	64, 82, 202, 208
FriOI	GRGCYC	2 cut(s)	267, 494
Fsp4HI	GCNGC	8 cut(s)	277, 354, 357, 360, 363, 378, 381, 411
GluI	GCNGC	8 cut(s)	277, 354, 357, 360, 363, 378, 381, 411
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	265, 276, 484
HapII	CCGG	1 cut(s)	495
Hin1II	CATG	2 cut(s)	151, 344
HinfI	GANTC	2 cut(s)	344, 473
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	2 cut(s)	225, 339
Hpy188I	TCNGA	4 cut(s)	209, 448, 472, 489
Hpy188III	TCNNGA	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	136, 320
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 362
HpyF3I	CTNAG	3 cut(s)	425, 445, 479
Hsp92II	CATG	2 cut(s)	151, 344
Kzo9I	GATC	4 cut(s)	190, 209, 505, 509
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	4 cut(s)	365, 367, 368, 371
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	4 cut(s)	192, 211, 507, 511
MboI	GATC	4 cut(s)	190, 209, 505, 509
MboII	GAAGA	3 cut(s)	164, 392, 413
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	267, 494
MluCI	AATT	2 cut(s)	20, 246
MlyI	GAGTC	2 cut(s)	338, 467
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	3 cut(s)	82, 272, 441
MvaI	CCWGG	3 cut(s)	82, 272, 441
MwoI	GCNNNNNNNGC	2 cut(s)	359, 362
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	4 cut(s)	190, 209, 505, 509
NlaIII	CATG	2 cut(s)	151, 344
NlaIV	GGNNCC	2 cut(s)	265, 266
NmuCI	GTSAC	1 cut(s)	44
PceI	AGGCCT	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	167
PkrI	GCNGC	8 cut(s)	278, 355, 358, 361, 364, 379, 382, 412
PleI	GAGTC	2 cut(s)	338, 467
PpsI	GAGTC	2 cut(s)	338, 467
Psp124BI	GAGCTC	1 cut(s)	494
Psp6I	CCWGG	3 cut(s)	80, 270, 439
PspGI	CCWGG	3 cut(s)	80, 270, 439
PspN4I	GGNNCC	2 cut(s)	265, 266
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	4 cut(s)	84, 263, 264, 274
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	8 cut(s)	277, 354, 357, 360, 363, 378, 381, 411
Sau3AI	GATC	4 cut(s)	190, 209, 505, 509
Sau96I	GGNCC	4 cut(s)	84, 263, 264, 274
ScaI	AGTACT	1 cut(s)	73
SchI	GAGTC	2 cut(s)	338, 467
ScrFI	CCNGG	3 cut(s)	82, 272, 441
SduI	GDGCHC	2 cut(s)	267, 494
SetI	ASST	7 cut(s)	16, 43, 159, 233, 255, 459, 494
SinI	GGWCC	1 cut(s)	84
Sse9I	AATT	2 cut(s)	20, 246
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	5 cut(s)	277, 363, 375, 378, 411
SstI	GAGCTC	1 cut(s)	494
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	3 cut(s)	80, 270, 439
StyI	CCWWGG	2 cut(s)	147, 366
TaqI	TCGA	1 cut(s)	508
TasI	AATT	2 cut(s)	20, 246
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	4 cut(s)	279, 365, 380, 413
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	4 cut(s)	353, 356, 359, 380
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	17, 66, 490
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.