Rw0G004200
BZIP Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00162
OG0000739
Physical Location & Seq
Reverse (-)
77704 .. 79070
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004200.1

Sequence Viewer

Length: 687 bp
ATGTTGTCATCAACTGGTAGTGAAGAAAGCAACTACAACTCATCTTCCTGCTCTTCCGCCACCACAACACCCGCTTCTCCATTCTCGCAGGCAACCCCAAGAAGAACCATGGAGGAGGTCTGGAAGGACATCAACCTCGCCTCGCTTTCGGACTCCAACAACTCACTCAACAACAATCCCAACTTCAGAAACATGACCCTCCAGGACTTTCTGGCAAGGCCCTTTGGCAATGTGGTCTCTCCCAGACCCGATCACCACCACCACCACCATCATCACCACACCACTCGCAACTCTCCTCCTCCTCCTCAAGCTGTGATGCCGAGCCCAGCCACTGTTCTGAGCTTGAATCATTTGAGCTCGGACCAGTTTCAGCTCTTCTGTTTAGAGAATCTCAACACTAGGCCTATTGCTAACATCAACCACCCCAATAGTAGTACTGTTTCTGATAACTCTTTCAGTGGTGCTTACCCATTTGAGGGTCTCGGAAACCAATCTTCTCCTTCTTCTGGGTTGGTTATGCCGTCGGGTTTTGGGGACGGGAAGAAGAGGTTACCGGAATCTGATCGCAGCAACTTCCGAGGAGGAGATAGGAGACACAAGCGGATGATCAAGAACAGGGAATCTGCTGCAAGATCCAGAGCAAGGAAGCAGGAATATTGCTGTCCCTATAATTCTCAAAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

228

Amino Acids

25.35

Weight (kDa)

9.35

Isoelectric Point (pI)

73.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 197 - 220 2.2e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 57, 72, 601
AclWI GGATC 1 cut(s) 627
AcuI CTGAAG 1 cut(s) 169
AfaI GTAC 2 cut(s) 436, 683
AfiI CCNNNNNNNGG 4 cut(s) 475, 476, 506, 642
AgsI TTSAA 1 cut(s) 346
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 4 cut(s) 311, 342, 357, 373
AluI AGCT 4 cut(s) 311, 342, 357, 373
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 3 cut(s) 241, 485, 586
AlwI GGATC 1 cut(s) 627
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 2 cut(s) 218, 401
ApeKI GCWGC 2 cut(s) 567, 626
AspS9I GGNCC 2 cut(s) 219, 361
AsuHPI GGTGA 2 cut(s) 245, 266
AvaII GGWCC 1 cut(s) 361
BanII GRGCYC 2 cut(s) 326, 359
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 579, 613
BccI CCATC 1 cut(s) 276
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 606
BcoDI GTCTC 3 cut(s) 241, 485, 586
BfaI CTAG 1 cut(s) 399
BisI GCNGC 2 cut(s) 568, 627
BlsI GCNGC 2 cut(s) 569, 628
BmcAI AGTACT 2 cut(s) 436, 683
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 219, 361
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 291
BsaI GGTCTC 2 cut(s) 241, 485
BsaJI CCNNGG 2 cut(s) 108, 577
BsaWI WCCGGW 1 cut(s) 553
Bsc4I CCNNNNNNNGG 4 cut(s) 475, 476, 506, 642
Bse1I ACTGG 2 cut(s) 19, 364
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 108, 577
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 4 cut(s) 475, 476, 506, 642
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 19, 364
BseRI GAGGAG 7 cut(s) 128, 285, 288, 291, 294, 594, 597
BseXI GCAGC 2 cut(s) 579, 613
BseYI CCCAGC 1 cut(s) 325
BshFI GGCC 2 cut(s) 220, 403
BsiHKAI GWGCWC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 2 cut(s) 548, 648
BslI CCNNNNNNNGG 4 cut(s) 475, 476, 506, 642
BsmAI GTCTC 3 cut(s) 241, 485, 586
BsmFI GGGAC 2 cut(s) 548, 648
BsnI GGCC 2 cut(s) 220, 403
Bso31I GGTCTC 2 cut(s) 241, 485
Bsp1286I GDGCHC 2 cut(s) 326, 359
Bsp143I GATC 4 cut(s) 250, 562, 606, 632
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 3 cut(s) 57, 72, 601
BspANI GGCC 2 cut(s) 220, 403
BspCNI CTCAG 1 cut(s) 330
BspPI GGATC 1 cut(s) 627
BspQI GCTCTTC 2 cut(s) 58, 380
BspTNI GGTCTC 2 cut(s) 241, 485
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 2 cut(s) 19, 364
BssECI CCNNGG 2 cut(s) 108, 577
BssMI GATC 4 cut(s) 250, 562, 606, 632
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 334, 439
Bst6I CTCTTC 3 cut(s) 58, 380, 539
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 338
BstDSI CCRYGG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 549
BstF5I GGATG 1 cut(s) 609
BstKTI GATC 4 cut(s) 253, 565, 609, 635
BstMAI GTCTC 3 cut(s) 241, 485, 586
BstMBI GATC 4 cut(s) 250, 562, 606, 632
BstNI CCWGG 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 579, 613
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
BsuRI GGCC 2 cut(s) 220, 403
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 330, 463
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 219, 361
Csp6I GTAC 2 cut(s) 435, 682
CviAII CATG 2 cut(s) 109, 193
CviJI RGCY 8 cut(s) 220, 311, 324, 329, 342, 357, 373, 403
CviKI_1 RGCY 8 cut(s) 220, 311, 324, 329, 342, 357, 373, 403
CviQI GTAC 2 cut(s) 435, 682
DdeI CTNAG 1 cut(s) 338
DpnI GATC 4 cut(s) 252, 564, 608, 634
DpnII GATC 4 cut(s) 250, 562, 606, 632
Eam1104I CTCTTC 3 cut(s) 58, 380, 539
EarI CTCTTC 3 cut(s) 58, 380, 539
EciI GGCGGA 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 403
Eco24I GRGCYC 2 cut(s) 326, 359
Eco31I GGTCTC 2 cut(s) 241, 485
Eco47I GGWCC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 169
Eco91I GGTNACC 1 cut(s) 549
EcoICRI GAGCTC 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 219
EcoO65I GGTNACC 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 326, 359
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 112, 196
FaiI YATR 4 cut(s) 110, 194, 518, 669
FaqI GGGAC 2 cut(s) 548, 648
FatI CATG 2 cut(s) 108, 192
FauI CCCGC 1 cut(s) 79
FbaI TGATCA 1 cut(s) 606
Fnu4HI GCNGC 2 cut(s) 568, 627
FokI GGATG 1 cut(s) 616
FriOI GRGCYC 2 cut(s) 326, 359
Fsp4HI GCNGC 2 cut(s) 568, 627
FspBI CTAG 1 cut(s) 399
GluI GCNGC 2 cut(s) 568, 627
GsaI CCCAGC 1 cut(s) 329
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 2 cut(s) 220, 403
HapII CCGG 1 cut(s) 554
Hin1II CATG 2 cut(s) 112, 196
HinfI GANTC 5 cut(s) 152, 346, 388, 557, 620
HpaII CCGG 1 cut(s) 554
HphI GGTGA 2 cut(s) 245, 266
Hpy188I TCNGA 8 cut(s) 151, 188, 339, 361, 445, 485, 562, 578
Hpy188III TCNNGA 3 cut(s) 121, 610, 636
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 2 cut(s) 118, 510
HpyCH4III ACNGT 2 cut(s) 334, 439
HpyCH4V TGCA 1 cut(s) 629
HpyF3I CTNAG 1 cut(s) 338
Hsp92II CATG 2 cut(s) 112, 196
Ksp22I TGATCA 1 cut(s) 606
Kzo9I GATC 4 cut(s) 250, 562, 606, 632
LguI GCTCTTC 2 cut(s) 58, 380
Lsp1109I GCAGC 2 cut(s) 579, 613
LweI GCATC 1 cut(s) 306
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 549
MalI GATC 4 cut(s) 252, 564, 608, 634
MboI GATC 4 cut(s) 250, 562, 606, 632
MboII GAAGA 9 cut(s) 35, 36, 45, 114, 367, 486, 495, 553, 556
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 2 cut(s) 326, 359
MluCI AATT 1 cut(s) 670
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 180
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 108
NdeII GATC 4 cut(s) 250, 562, 606, 632
NlaIII CATG 2 cut(s) 112, 196
NmeAIII GCCGAG 1 cut(s) 345
PceI AGGCCT 1 cut(s) 403
PciSI GCTCTTC 2 cut(s) 58, 380
PfeI GAWTC 4 cut(s) 346, 388, 557, 620
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 2 cut(s) 569, 628
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 549
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 1 cut(s) 201
PspPI GGNCC 2 cut(s) 219, 361
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 632
RsaI GTAC 2 cut(s) 436, 683
RsaNI GTAC 2 cut(s) 435, 682
SacI GAGCTC 1 cut(s) 359
SapI GCTCTTC 2 cut(s) 58, 380
SatI GCNGC 2 cut(s) 568, 627
Sau3AI GATC 4 cut(s) 250, 562, 606, 632
Sau96I GGNCC 2 cut(s) 219, 361
ScaI AGTACT 2 cut(s) 436, 683
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 326, 359
SetI ASST 7 cut(s) 120, 138, 313, 344, 359, 375, 551
SfaNI GCATC 1 cut(s) 306
SinI GGWCC 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 1 cut(s) 670
SseBI AGGCCT 1 cut(s) 403
SsiI CCGC 3 cut(s) 57, 72, 601
SspI AATATT 1 cut(s) 656
SspMI CTAG 1 cut(s) 399
SstI GAGCTC 1 cut(s) 359
StuI AGGCCT 1 cut(s) 403
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 334, 439
TasI AATT 1 cut(s) 670
TatI WGTACW 2 cut(s) 434, 681
TfiI GAWTC 4 cut(s) 346, 388, 557, 620
TscAI CASTG 2 cut(s) 337, 463
TseI GCWGC 2 cut(s) 567, 626
TspRI CASTG 2 cut(s) 337, 463
VpaK11BI GGWCC 1 cut(s) 361
XspI CTAG 1 cut(s) 399
ZrmI AGTACT 2 cut(s) 436, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.