Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002776.1

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Reverse (-)

99681 .. 100367

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002776.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgttgtcatcaactggtagtgaagaaagcaactacaactcatcttcctggtcttcccccaccacaacacccgcttctccattctcgcaggcaaccccaagaagaaccatggaggaggtctggaaggacatcaacctcgcctcgctttcggactccaacaactcactcaacaacaatcccaacttcagaaacatgaccctccaggactttctggcaaggccctttggcaatgtggtctctcccagacccgatcaccaccaccaccaccaccatcaccacaccactcgcaactctcctcctcctcctcaagctgtgatgccgagcccagccactgttctgagcttgaatcatttgagctcggaccagtttcagctcttctgtttagagaatctcaacactaggcctattgttaacatcaaccaccccaatagtagtactgtttctgataactctttcagtggtgcttacccatttgagggtctcggaaaccaatcttctccttcttctgggttggttatgccgtcgggttttggggacgggaagaagaggttaccggaatctgatcgcagcaacttcggaggaggagataggagacacaagcggatgatcaagaacagagaatctgctgcaagatccagagcaaggaagcaggaatattgctgtccctataattctcaaaagtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

228

Amino Acids

25.39

Weight (kDa)

9.3

Isoelectric Point (pI)

74.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 601
AclWI	GGATC	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	169
AfaI	GTAC	2 cut(s)	436, 683
AfiI	CCNNNNNNNGG	4 cut(s)	475, 476, 506, 642
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	47, 201
AluBI	AGCT	4 cut(s)	311, 342, 357, 373
AluI	AGCT	4 cut(s)	311, 342, 357, 373
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	3 cut(s)	241, 485, 586
AlwI	GGATC	1 cut(s)	627
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	218, 401
ApeKI	GCWGC	2 cut(s)	567, 626
AspS9I	GGNCC	2 cut(s)	219, 361
AsuHPI	GGTGA	2 cut(s)	245, 266
AvaII	GGWCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	326, 359
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	579, 613
BccI	CCATC	1 cut(s)	279
BceAI	ACGGC	1 cut(s)	505
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BciT130I	CCWGG	2 cut(s)	49, 203
BclI	TGATCA	1 cut(s)	606
BcoDI	GTCTC	3 cut(s)	241, 485, 586
BfaI	CTAG	1 cut(s)	399
BisI	GCNGC	2 cut(s)	568, 627
BlsI	GCNGC	2 cut(s)	569, 628
BmcAI	AGTACT	2 cut(s)	436, 683
Bme1390I	CCNGG	2 cut(s)	49, 203
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	219, 361
BmrFI	CCNGG	2 cut(s)	49, 203
BmsI	GCATC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	291
BsaI	GGTCTC	2 cut(s)	241, 485
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	4 cut(s)	475, 476, 506, 642
Bse1I	ACTGG	2 cut(s)	19, 364
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	49, 203
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	609
BseLI	CCNNNNNNNGG	4 cut(s)	475, 476, 506, 642
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	2 cut(s)	19, 364
BseRI	GAGGAG	7 cut(s)	128, 285, 288, 291, 294, 594, 597
BseXI	GCAGC	2 cut(s)	579, 613
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	2 cut(s)	220, 403
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	2 cut(s)	548, 648
BslI	CCNNNNNNNGG	4 cut(s)	475, 476, 506, 642
BsmAI	GTCTC	3 cut(s)	241, 485, 586
BsmFI	GGGAC	2 cut(s)	548, 648
BsnI	GGCC	2 cut(s)	220, 403
Bso31I	GGTCTC	2 cut(s)	241, 485
Bsp1286I	GDGCHC	2 cut(s)	326, 359
Bsp143I	GATC	4 cut(s)	250, 562, 606, 632
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	2 cut(s)	72, 601
BspANI	GGCC	2 cut(s)	220, 403
BspCNI	CTCAG	1 cut(s)	330
BspPI	GGATC	1 cut(s)	627
BspQI	GCTCTTC	1 cut(s)	380
BspTNI	GGTCTC	2 cut(s)	241, 485
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	19, 364
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	4 cut(s)	250, 562, 606, 632
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	49, 203
Bst4CI	ACNGT	2 cut(s)	334, 439
Bst6I	CTCTTC	2 cut(s)	380, 539
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	549
BstF5I	GGATG	1 cut(s)	609
BstKTI	GATC	4 cut(s)	253, 565, 609, 635
BstMAI	GTCTC	3 cut(s)	241, 485, 586
BstMBI	GATC	4 cut(s)	250, 562, 606, 632
BstNI	CCWGG	2 cut(s)	49, 203
BstPI	GGTNACC	1 cut(s)	549
BstSCI	CCNGG	2 cut(s)	47, 201
BstV1I	GCAGC	2 cut(s)	579, 613
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	632
BsuRI	GGCC	2 cut(s)	220, 403
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	330, 463
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	219, 361
Csp6I	GTAC	2 cut(s)	435, 682
CviAII	CATG	2 cut(s)	109, 193
CviJI	RGCY	8 cut(s)	220, 311, 324, 329, 342, 357, 373, 403
CviKI_1	RGCY	8 cut(s)	220, 311, 324, 329, 342, 357, 373, 403
CviQI	GTAC	2 cut(s)	435, 682
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	4 cut(s)	252, 564, 608, 634
DpnII	GATC	4 cut(s)	250, 562, 606, 632
Eam1104I	CTCTTC	2 cut(s)	380, 539
EarI	CTCTTC	2 cut(s)	380, 539
Ecl136II	GAGCTC	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	403
Eco24I	GRGCYC	2 cut(s)	326, 359
Eco31I	GGTCTC	2 cut(s)	241, 485
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	169
Eco91I	GGTNACC	1 cut(s)	549
EcoICRI	GAGCTC	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	219
EcoO65I	GGTNACC	1 cut(s)	549
EcoRII	CCWGG	2 cut(s)	47, 201
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	2 cut(s)	326, 359
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	112, 196
FaiI	YATR	4 cut(s)	110, 194, 518, 669
FaqI	GGGAC	2 cut(s)	548, 648
FatI	CATG	2 cut(s)	108, 192
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	606
Fnu4HI	GCNGC	2 cut(s)	568, 627
FokI	GGATG	1 cut(s)	616
FriOI	GRGCYC	2 cut(s)	326, 359
Fsp4HI	GCNGC	2 cut(s)	568, 627
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	2 cut(s)	568, 627
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	220, 403
HapII	CCGG	1 cut(s)	554
Hin1II	CATG	2 cut(s)	112, 196
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	5 cut(s)	152, 346, 388, 557, 620
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	2 cut(s)	245, 266
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	8 cut(s)	151, 188, 339, 361, 445, 485, 562, 578
Hpy188III	TCNNGA	3 cut(s)	121, 610, 636
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	1 cut(s)	526
HpyAV	CCTTC	2 cut(s)	118, 510
HpyCH4III	ACNGT	2 cut(s)	334, 439
HpyCH4V	TGCA	1 cut(s)	629
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	2 cut(s)	112, 196
Ksp22I	TGATCA	1 cut(s)	606
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	250, 562, 606, 632
LguI	GCTCTTC	1 cut(s)	380
Lsp1109I	GCAGC	2 cut(s)	579, 613
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	4 cut(s)	252, 564, 608, 634
MboI	GATC	4 cut(s)	250, 562, 606, 632
MboII	GAAGA	9 cut(s)	35, 36, 45, 114, 367, 486, 495, 553, 556
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	2 cut(s)	326, 359
MluCI	AATT	1 cut(s)	670
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	180
MseI	TTAA	1 cut(s)	411
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	2 cut(s)	49, 203
MvaI	CCWGG	2 cut(s)	49, 203
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	4 cut(s)	250, 562, 606, 632
NlaIII	CATG	2 cut(s)	112, 196
NmeAIII	GCCGAG	1 cut(s)	345
PceI	AGGCCT	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	380
PfeI	GAWTC	4 cut(s)	346, 388, 557, 620
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	569, 628
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	47, 201
PspEI	GGTNACC	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	2 cut(s)	47, 201
PspPI	GGNCC	2 cut(s)	219, 361
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	632
RsaI	GTAC	2 cut(s)	436, 683
RsaNI	GTAC	2 cut(s)	435, 682
SacI	GAGCTC	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	568, 627
Sau3AI	GATC	4 cut(s)	250, 562, 606, 632
Sau96I	GGNCC	2 cut(s)	219, 361
ScaI	AGTACT	2 cut(s)	436, 683
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	49, 203
SduI	GDGCHC	2 cut(s)	326, 359
SetI	ASST	7 cut(s)	120, 138, 313, 344, 359, 375, 551
SfaNI	GCATC	1 cut(s)	306
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	1 cut(s)	670
SseBI	AGGCCT	1 cut(s)	403
SsiI	CCGC	2 cut(s)	72, 601
SspI	AATATT	1 cut(s)	656
SspMI	CTAG	1 cut(s)	399
SstI	GAGCTC	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	403
StyD4I	CCNGG	2 cut(s)	47, 201
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	334, 439
TasI	AATT	1 cut(s)	670
TatI	WGTACW	2 cut(s)	434, 681
TfiI	GAWTC	4 cut(s)	346, 388, 557, 620
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	337, 463
TseI	GCWGC	2 cut(s)	567, 626
TspRI	CASTG	2 cut(s)	337, 463
VpaK11BI	GGWCC	1 cut(s)	361
XspI	CTAG	1 cut(s)	399
ZrmI	AGTACT	2 cut(s)	436, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.