Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Reverse (-)

62543825 .. 62544698

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG436100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGACGATGGAGGATGTGTGGAAAGACATAAGTCTAGCTTCTCTTTGTGACCACAACTCACCGGCGGCTGCTGCCGGCAGCTCCGCCTCACGTAACGACTCTGCAGCTATTCGTGGCTTCATTTTTCAAGATTTCATGGCGGCGGCGTCCAACAAACTCACTCCTTCTCTTGCTACTGATCTAGCGCCACTGCCACAGCCACCGGCCACTCTCCTCAGCTTGAGTTCTTCCGGTTCCGATCATTTTCAACACTGCCAAGTTCAAAGCGCTACTGCTACTGCTAGTACCAACACTACCGCTCCACCAATACCAGTGACGCCAAACGCGCAAAGACTGCACCGTATTAGTACTATTCCTTCATCTTCTGTGATCTCTTTCTCCAATAAGCACGCGAATAACTCGTCGGAGGCTTTGGATTCTTCCCCGTCTTGCAAGAAAAGGGCGTTAGAAGAAAATGGAGAGAACTCTAGGCATGTCCGGCATAAGCGGATGATCAAGAACAGAGAATCGGCCTCTCGCTCCCGAGCACGAAAGCAAGCTTATACAAGTGAGCTGGAACTTGAACTAGCACATTTGCGGGAGGAGAATGCCAGACTTAAAAGACGGCAAGAAAAGATCTCCTTAGCAGCCCCTGTAGCAGCAGCAACTCCTCCAAAAAGGGCACACTCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

224

Amino Acids

24.16

Weight (kDa)

9.76

Isoelectric Point (pI)

64.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	160 - 205	5.9e-11	bZIP transcription factor
bZIP_2	PF07716	160 - 205	8.5e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	299
AccII	CGCG	2 cut(s)	326, 392
AciI	CCGC	7 cut(s)	65, 84, 140, 143, 297, 487, 577
AcoI	YGGCCR	1 cut(s)	204
AcyI	GRCGYC	2 cut(s)	146, 317
AdeI	CACNNNGTG	1 cut(s)	670
AfaI	GTAC	2 cut(s)	286, 349
AfeI	AGCGCT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	128, 248, 263, 563
AluBI	AGCT	6 cut(s)	38, 81, 107, 219, 539, 553
AluI	AGCT	6 cut(s)	38, 81, 107, 219, 539, 553
Alw21I	GWGCWC	1 cut(s)	529
AlwNI	CAGNNNCTG	1 cut(s)	632
Ama87I	CYCGRG	1 cut(s)	522
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	2 cut(s)	204, 510
ApeKI	GCWGC	7 cut(s)	68, 71, 78, 104, 626, 638, 641
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AspLEI	GCGC	3 cut(s)	187, 269, 328
AsuHPI	GGTGA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	522
BaeGI	GKGCMC	1 cut(s)	664
BarI	GAAGNNNNNNTAC	2 cut(s)	340, 372
Bbv12I	GWGCWC	1 cut(s)	529
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	7 cut(s)	55, 58, 90, 116, 638, 650, 653
BceAI	ACGGC	1 cut(s)	620
BclI	TGATCA	1 cut(s)	492
BfaI	CTAG	5 cut(s)	35, 182, 282, 468, 566
BfmI	CTRYAG	2 cut(s)	102, 633
BfoI	RGCGCY	2 cut(s)	188, 270
BglII	AGATCT	1 cut(s)	615
BmcAI	AGTACT	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	522
BmiI	GGNNCC	1 cut(s)	235
BoxI	GACNNNNGTC	1 cut(s)	30
Bpu10I	CCTNAGC	2 cut(s)	215, 622
BpuEI	CTTGAG	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	92
BsaHI	GRCGYC	2 cut(s)	146, 317
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 283, 313
Bse118I	RCCGGY	3 cut(s)	61, 74, 202
Bse1I	ACTGG	1 cut(s)	311
BseGI	GGATG	2 cut(s)	19, 495
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	3 cut(s)	203, 596, 639
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	7 cut(s)	55, 58, 90, 116, 638, 650, 653
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	2 cut(s)	326, 392
BshFI	GGCC	2 cut(s)	206, 512
BsiHKAI	GWGCWC	1 cut(s)	529
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	5 cut(s)	62, 75, 203, 231, 478
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	2 cut(s)	206, 512
BsoBI	CYCGRG	1 cut(s)	522
Bsp1286I	GDGCHC	2 cut(s)	529, 664
Bsp143I	GATC	5 cut(s)	178, 238, 369, 492, 615
BspACI	CCGC	7 cut(s)	65, 84, 140, 143, 297, 487, 577
BspANI	GGCC	2 cut(s)	206, 512
BspCNI	CTCAG	1 cut(s)	228
BspFNI	CGCG	2 cut(s)	326, 392
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	299
BsrFI	RCCGGY	3 cut(s)	61, 74, 202
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	3 cut(s)	61, 74, 202
BssMI	GATC	5 cut(s)	178, 238, 369, 492, 615
BssNI	GRCGYC	2 cut(s)	146, 317
Bst4CI	ACNGT	1 cut(s)	341
BstACI	GRCGYC	2 cut(s)	146, 317
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	76, 390, 537
BstDEI	CTNAG	2 cut(s)	215, 622
BstF5I	GGATG	2 cut(s)	19, 495
BstFNI	CGCG	2 cut(s)	326, 392
BstH2I	RGCGCY	2 cut(s)	188, 270
BstHHI	GCGC	3 cut(s)	187, 269, 328
BstKTI	GATC	5 cut(s)	181, 241, 372, 495, 618
BstMBI	GATC	5 cut(s)	178, 238, 369, 492, 615
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 325, 334, 478, 635
BstNSI	RCATGY	1 cut(s)	476
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSFI	CTRYAG	2 cut(s)	102, 633
BstSLI	GKGCMC	1 cut(s)	664
BstUI	CGCG	2 cut(s)	326, 392
BstV1I	GCAGC	7 cut(s)	55, 58, 90, 116, 638, 650, 653
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	206, 512
BtsCI	GGATG	2 cut(s)	19, 495
BtsI	GCAGTG	2 cut(s)	188, 250
BtsIMutI	CAGTG	3 cut(s)	188, 250, 318
Cac8I	GCNNGC	3 cut(s)	76, 390, 537
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	3 cut(s)	187, 269, 328
Cfr10I	RCCGGY	3 cut(s)	61, 74, 202
CseI	GACGC	2 cut(s)	135, 325
Csp6I	GTAC	2 cut(s)	285, 348
CviAII	CATG	2 cut(s)	136, 473
CviQI	GTAC	2 cut(s)	285, 348
DdeI	CTNAG	2 cut(s)	215, 622
DpnI	GATC	5 cut(s)	180, 240, 371, 494, 617
DpnII	GATC	5 cut(s)	178, 238, 369, 492, 615
DraIII	CACNNNGTG	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	73
Eco47III	AGCGCT	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	522
FaeI	CATG	2 cut(s)	139, 476
FaiI	YATR	5 cut(s)	29, 137, 474, 483, 543
FalI	AAGNNNNNCTT	4 cut(s)	22, 54, 605, 637
FatI	CATG	2 cut(s)	135, 472
FauI	CCCGC	1 cut(s)	570
FbaI	TGATCA	1 cut(s)	492
FokI	GGATG	2 cut(s)	26, 502
FspBI	CTAG	5 cut(s)	35, 182, 282, 468, 566
GlaI	GCGC	3 cut(s)	186, 268, 327
HaeII	RGCGCY	2 cut(s)	188, 270
HaeIII	GGCC	2 cut(s)	206, 512
HapII	CCGG	5 cut(s)	62, 75, 203, 231, 478
HgaI	GACGC	2 cut(s)	135, 325
HhaI	GCGC	3 cut(s)	187, 269, 328
Hin1I	GRCGYC	2 cut(s)	146, 317
Hin1II	CATG	2 cut(s)	139, 476
Hin6I	GCGC	3 cut(s)	185, 267, 326
HinP1I	GCGC	3 cut(s)	185, 267, 326
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	3 cut(s)	98, 416, 506
HpaII	CCGG	5 cut(s)	62, 75, 203, 231, 478
HphI	GGTGA	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	238, 406
Hpy188III	TCNNGA	3 cut(s)	128, 496, 522
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	2 cut(s)	174, 366
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	104, 337, 432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 325, 334, 478, 635
HpyF3I	CTNAG	2 cut(s)	215, 622
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	2 cut(s)	146, 317
Hsp92II	CATG	2 cut(s)	139, 476
HspAI	GCGC	3 cut(s)	185, 267, 326
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	5 cut(s)	178, 238, 369, 492, 615
LmnI	GCTCC	3 cut(s)	86, 304, 524
LpnPI	CCDG	9 cut(s)	75, 88, 216, 244, 324, 491, 539, 604, 645
Lsp1109I	GCAGC	7 cut(s)	55, 58, 90, 116, 638, 650, 653
MaeI	CTAG	5 cut(s)	35, 182, 282, 468, 566
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	3 cut(s)	47, 92, 313
MalI	GATC	5 cut(s)	180, 240, 371, 494, 617
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	5 cut(s)	178, 238, 369, 492, 615
MboII	GAAGA	4 cut(s)	219, 354, 411, 461
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	2 cut(s)	529, 664
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	174, 384
MnlI	CCTC	7 cut(s)	4, 97, 224, 400, 523, 574, 660
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	597
MspI	CCGG	5 cut(s)	62, 75, 203, 231, 478
Mva1269I	GAATGC	1 cut(s)	592
MvnI	CGCG	2 cut(s)	326, 392
MwoI	GCNNNNNNNGC	5 cut(s)	71, 325, 334, 478, 635
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	5 cut(s)	178, 238, 369, 492, 615
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	139, 476
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	47, 313
NspI	RCATGY	1 cut(s)	476
PctI	GAATGC	1 cut(s)	592
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	416, 506
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	92
PshAI	GACNNNNGTC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	615
RsaI	GTAC	2 cut(s)	286, 349
RsaNI	GTAC	2 cut(s)	285, 348
SaqAI	TTAA	1 cut(s)	597
Sau3AI	GATC	5 cut(s)	178, 238, 369, 492, 615
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	529, 664
SetI	ASST	7 cut(s)	40, 83, 94, 109, 221, 541, 555
SfcI	CTRYAG	2 cut(s)	102, 633
SgrAI	CRCCGGYG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SsiI	CCGC	7 cut(s)	65, 84, 140, 143, 297, 487, 577
SspMI	CTAG	5 cut(s)	35, 182, 282, 468, 566
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	94
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	3 cut(s)	68, 143, 146
TfiI	GAWTC	2 cut(s)	416, 506
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	3 cut(s)	195, 257, 318
TseFI	GTSAC	2 cut(s)	47, 313
TseI	GCWGC	7 cut(s)	68, 71, 78, 104, 626, 638, 641
Tsp45I	GTSAC	2 cut(s)	47, 313
TspDTI	ATGAA	3 cut(s)	109, 124, 348
TspRI	CASTG	3 cut(s)	195, 257, 318
XceI	RCATGY	1 cut(s)	476
XspI	CTAG	5 cut(s)	35, 182, 282, 468, 566
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.