FvH4_2g38080
BZIP Family

regulation of photoperiodism, flowering

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000739
Physical Location & Seq
Forward (+)
27596299 .. 27597885
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38080.t2

Sequence Viewer

Length: 651 bp
ATGACGATGGAGGATGTGTGGAAAGACATCAGCCTAGCTTCTCTCTGTGACCACAGCTCACCGGGTGCTGCCGGCAGCTCCGCCACTCGTAATGACCCTGCAGGTGTTCGTGGCTTCATTTTCCAAGATTTCATGGCGGCTGCTTCCACCAAACTCGCTCCTTCTTCTCTTGCTACTGATCTAGGGCCACCGCCGCCGGCCAATCTCCTCAGCTTGAGTTCTTCCGGCTCCGATCATTTTCAGCAGTACCAAGTTCACAACTCTTCTGCTACTACCAGTACCAACACTAGTGCTCCACCAAACTTAGCGAAACCAAACCCTGATAGTACTACTAGGCCTTCATCTTCTTTGATCTCTTTCTCAAACAAGTCCGCCTTGGAGGCTTTGGGTTCTTCCTCATATTGCAAGAAAAGGGCCGTAGAGGAAGAAAACGGAGAGAATTCTAGGCATGTCCGGCATAAGCGGATGATCAAGAACAGAGAATCGGCTTCACGCTCCAGAGCTCGAAAGCAGGCTTATACAAGTGAGCTGGAACTTAAACTTGAACTTTTGAAGGAGGAAAATGCCAGACTCAGAATGCAGCAACAGAAGTTCTGCTTAGCCACCCCTGTAGCACCAGCAACAACTCTAAAAAGGGCACACTCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

217

Amino Acids

23.38

Weight (kDa)

9.48

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 152 - 178 3.3e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 92
AciI CCGC 6 cut(s) 81, 137, 191, 194, 372, 463
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 439
AdeI CACNNNGTG 1 cut(s) 65
AfaI GTAC 3 cut(s) 248, 280, 328
AgsI TTSAA 2 cut(s) 545, 553
AhlI ACTAGT 1 cut(s) 287
AluBI AGCT 6 cut(s) 38, 57, 78, 213, 503, 529
AluI AGCT 6 cut(s) 38, 57, 78, 213, 503, 529
Alw21I GWGCWC 2 cut(s) 295, 505
AoxI GGCC 4 cut(s) 185, 198, 335, 414
ApeKI GCWGC 4 cut(s) 68, 75, 140, 580
ApoI RAATTY 1 cut(s) 439
AspS9I GGNCC 2 cut(s) 185, 414
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 505
Bbv12I GWGCWC 2 cut(s) 295, 505
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 4 cut(s) 55, 87, 127, 592
BceAI ACGGC 1 cut(s) 401
BclI TGATCA 1 cut(s) 468
BcnI CCSGG 1 cut(s) 63
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 5 cut(s) 35, 182, 288, 333, 444
BfmI CTRYAG 2 cut(s) 99, 609
BfuAI ACCTGC 1 cut(s) 92
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 6 cut(s) 69, 76, 138, 141, 194, 581
BlpI GCTNAGC 1 cut(s) 598
BlsI GCNGC 6 cut(s) 70, 77, 139, 142, 195, 582
BmcAI AGTACT 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 185, 414
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 481
Bpu10I CCTNAGC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 375
BsaXI ACNNNNNCTCC 3 cut(s) 32, 277, 307
Bse118I RCCGGY 2 cut(s) 71, 196
Bse1I ACTGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 2 cut(s) 19, 471
BseMII CTCAG 2 cut(s) 223, 586
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 4 cut(s) 55, 87, 127, 592
BshFI GGCC 4 cut(s) 187, 200, 337, 416
BsiHKAI GWGCWC 2 cut(s) 295, 505
BsiSI CCGG 5 cut(s) 62, 72, 197, 225, 454
BsmI GAATGC 1 cut(s) 582
BsnI GGCC 4 cut(s) 187, 200, 337, 416
Bsp1286I GDGCHC 3 cut(s) 295, 505, 640
Bsp143I GATC 4 cut(s) 178, 232, 351, 468
Bsp1720I GCTNAGC 1 cut(s) 598
BspACI CCGC 6 cut(s) 81, 137, 191, 194, 372, 463
BspANI GGCC 4 cut(s) 187, 200, 337, 416
BspCNI CTCAG 2 cut(s) 222, 585
BspLI GGNNCC 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 92
BsrFI RCCGGY 2 cut(s) 71, 196
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 2 cut(s) 71, 196
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 4 cut(s) 178, 232, 351, 468
BssT1I CCWWGG 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 268
BstC8I GCNNGC 3 cut(s) 73, 198, 513
BstDEI CTNAG 4 cut(s) 209, 304, 572, 598
BstF5I GGATG 2 cut(s) 19, 471
BstKTI GATC 4 cut(s) 181, 235, 354, 471
BstMBI GATC 4 cut(s) 178, 232, 351, 468
BstMWI GCNNNNNNNGC 3 cut(s) 193, 380, 454
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 2 cut(s) 99, 609
BstSLI GKGCMC 1 cut(s) 640
BstV1I GCAGC 4 cut(s) 55, 87, 127, 592
BsuRI GGCC 4 cut(s) 187, 200, 337, 416
BtsCI GGATG 2 cut(s) 19, 471
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 3 cut(s) 73, 198, 513
Cfr10I RCCGGY 2 cut(s) 71, 196
Cfr13I GGNCC 2 cut(s) 185, 414
Csp6I GTAC 3 cut(s) 247, 279, 327
CviAII CATG 2 cut(s) 133, 449
CviQI GTAC 3 cut(s) 247, 279, 327
DdeI CTNAG 4 cut(s) 209, 304, 572, 598
DpnI GATC 4 cut(s) 180, 234, 353, 470
DpnII GATC 4 cut(s) 178, 232, 351, 468
DraIII CACNNNGTG 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
EciI GGCGGA 2 cut(s) 70, 361
Ecl136II GAGCTC 1 cut(s) 503
Eco130I CCWWGG 1 cut(s) 375
Eco147I AGGCCT 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 505
Eco53kI GAGCTC 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 503
EcoRI GAATTC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 2 cut(s) 136, 452
FaiI YATR 6 cut(s) 134, 400, 450, 459, 519, 647
FalI AAGNNNNNCTT 4 cut(s) 359, 391, 581, 613
FatI CATG 2 cut(s) 132, 448
FbaI TGATCA 1 cut(s) 468
Fnu4HI GCNGC 6 cut(s) 69, 76, 138, 141, 194, 581
FokI GGATG 2 cut(s) 26, 478
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 6 cut(s) 69, 76, 138, 141, 194, 581
FspBI CTAG 5 cut(s) 35, 182, 288, 333, 444
GluI GCNGC 6 cut(s) 69, 76, 138, 141, 194, 581
GsuI CTGGAG 1 cut(s) 481
HaeIII GGCC 4 cut(s) 187, 200, 337, 416
HapII CCGG 5 cut(s) 62, 72, 197, 225, 454
Hin1II CATG 2 cut(s) 136, 452
HinfI GANTC 2 cut(s) 482, 570
HpaII CCGG 5 cut(s) 62, 72, 197, 225, 454
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 232, 575
Hpy188III TCNNGA 2 cut(s) 472, 498
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 3 cut(s) 171, 348, 547
HpyCH4V TGCA 3 cut(s) 101, 405, 580
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 380, 454
HpyF3I CTNAG 4 cut(s) 209, 304, 572, 598
Hsp92II CATG 2 cut(s) 136, 452
KroI GCCGGC 2 cut(s) 71, 196
KroNI GCCGGC 2 cut(s) 73, 198
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 4 cut(s) 178, 232, 351, 468
LmnI GCTCC 5 cut(s) 83, 163, 233, 298, 500
Lsp1109I GCAGC 4 cut(s) 55, 87, 127, 592
MaeI CTAG 5 cut(s) 35, 182, 288, 333, 444
MaeIII GTNAC 1 cut(s) 47
MalI GATC 4 cut(s) 180, 234, 353, 470
MboI GATC 4 cut(s) 178, 232, 351, 468
MboII GAAGA 6 cut(s) 156, 213, 255, 336, 384, 437
MhlI GDGCHC 3 cut(s) 295, 505, 640
MluCI AATT 1 cut(s) 439
MlyI GAGTC 1 cut(s) 564
MnlI CCTC 6 cut(s) 4, 218, 373, 406, 415, 550
MroNI GCCGGC 2 cut(s) 71, 196
MseI TTAA 1 cut(s) 537
MspI CCGG 5 cut(s) 62, 72, 197, 225, 454
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 582
MwoI GCNNNNNNNGC 3 cut(s) 193, 380, 454
NaeI GCCGGC 2 cut(s) 73, 198
NciI CCSGG 1 cut(s) 63
NdeII GATC 4 cut(s) 178, 232, 351, 468
NgoMIV GCCGGC 2 cut(s) 71, 196
NlaIII CATG 2 cut(s) 136, 452
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 1 cut(s) 452
PaqCI CACCTGC 1 cut(s) 92
PceI AGGCCT 1 cut(s) 337
PctI GAATGC 1 cut(s) 582
PdiI GCCGGC 2 cut(s) 73, 198
PfeI GAWTC 1 cut(s) 482
PkrI GCNGC 6 cut(s) 70, 77, 139, 142, 195, 582
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 505
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 2 cut(s) 185, 414
PstI CTGCAG 1 cut(s) 103
RsaI GTAC 3 cut(s) 248, 280, 328
RsaNI GTAC 3 cut(s) 247, 279, 327
SacI GAGCTC 1 cut(s) 505
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 6 cut(s) 69, 76, 138, 141, 194, 581
Sau3AI GATC 4 cut(s) 178, 232, 351, 468
Sau96I GGNCC 2 cut(s) 185, 414
SbfI CCTGCAGG 1 cut(s) 103
ScaI AGTACT 1 cut(s) 328
SchI GAGTC 1 cut(s) 564
ScrFI CCNGG 1 cut(s) 63
SdaI CCTGCAGG 1 cut(s) 103
SduI GDGCHC 3 cut(s) 295, 505, 640
SetI ASST 7 cut(s) 40, 59, 80, 106, 215, 505, 531
SfcI CTRYAG 2 cut(s) 99, 609
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
SpeI ACTAGT 1 cut(s) 287
Sse8387I CCTGCAGG 1 cut(s) 103
Sse9I AATT 1 cut(s) 439
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 6 cut(s) 81, 137, 191, 194, 372, 463
SspMI CTAG 5 cut(s) 35, 182, 288, 333, 444
SstI GAGCTC 1 cut(s) 505
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 1 cut(s) 375
TaqI TCGA 1 cut(s) 505
TasI AATT 1 cut(s) 439
TatI WGTACW 1 cut(s) 326
TauI GCSGC 2 cut(s) 140, 196
TfiI GAWTC 1 cut(s) 482
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 4 cut(s) 68, 75, 140, 580
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 3 cut(s) 106, 121, 330
TspGWI ACGGA 1 cut(s) 447
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 452
XspI CTAG 5 cut(s) 35, 182, 288, 333, 444
ZrmI AGTACT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.