MD15G1008300.v1.1

cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000739
Physical Location & Seq
Forward (+)
441914 .. 443727
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1008300.v1.1.491

Sequence Viewer

Length: 714 bp
ATGGAAGATGTTTGGAAAGACATTAGCCTGGCGTCTCTTTCTCGTAACGCCAGCGACAACACCACCACCTCCACTCACCACCCCACTGCCGCTGCTTTTCGGGGCATCACGTTTCAAGATTTCTTGGCTTCTACTAGTACTACTTCCTCCAACATCGACCCACCACCACCCGCTGCCGCTAGTACTGTTCTACGCTTGAATTGTGGGACTCGATCTGATCTTAAACAGCATTTACTTGAAACCACTAGTGCTACTATCACTGGTCCTGCTCTATTGAAACCAAACCCAATTACTCGTCCTACTAGTACTAGTGTTACTACTACTACTACTAGGCCCAATTCTTTGAATAATCCCTCTTCAGTCTTCCCTTCTTGCTGCAAGAAAAGGGCTCTAGATGATCATGATCAAAATCGCGAGGATCATCACAACTCCACTAATGGCCGCCATAAGCGCATGATGAAGAATCGAGAGTCCGCTGCTCGCTCCAGAGCCCGAAAGCAGGAACCTTTCTGTCCATCTATTTCATTACTGATCGCTTATACAAATGAGTTGGAGATTGAAATTGCACAGCTGCGGGAGGAAAATGCCAGGCTCAAGAGACAGCTGCAAGCAAAGTCGATGATCAATTCATCCTGCTTGGCTCCCTCTACCCTTGCTCAGCGGCTGCTTCCAAAAAGGCAAACCCTGTTCAGAACTTCAACAGCTCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

238

Amino Acids

26.18

Weight (kDa)

9.91

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 414
AciI CCGC 7 cut(s) 90, 171, 177, 442, 474, 574, 661
AclWI GGATC 1 cut(s) 426
AcoI YGGCCR 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 3 cut(s) 139, 184, 307
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 7 cut(s) 116, 199, 239, 277, 346, 560, 699
AhlI ACTAGT 4 cut(s) 134, 245, 302, 308
AjnI CCWGG 2 cut(s) 27, 587
AluBI AGCT 3 cut(s) 571, 604, 704
AluI AGCT 3 cut(s) 571, 604, 704
Alw26I GTCTC 2 cut(s) 39, 592
AlwI GGATC 1 cut(s) 426
AlwNI CAGNNNCTG 1 cut(s) 664
AoxI GGCC 2 cut(s) 332, 439
ApeKI GCWGC 7 cut(s) 92, 173, 375, 476, 571, 604, 664
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 2 cut(s) 263, 333
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 391, 493
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 7 cut(s) 79, 160, 362, 463, 558, 591, 651
BccI CCATC 1 cut(s) 523
BciT130I CCWGG 2 cut(s) 29, 589
BclI TGATCA 3 cut(s) 397, 403, 621
BcoDI GTCTC 2 cut(s) 39, 592
BcuI ACTAGT 4 cut(s) 134, 245, 302, 308
BfaI CTAG 7 cut(s) 135, 180, 246, 303, 309, 330, 392
BlpI GCTNAGC 1 cut(s) 657
BmcAI AGTACT 3 cut(s) 139, 184, 307
Bme1390I CCNGG 2 cut(s) 29, 589
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 263, 333
BmiI GGNNCC 2 cut(s) 504, 642
BmrFI CCNGG 2 cut(s) 29, 589
BmsI GCATC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 469
Bpu1102I GCTNAGC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 578
BsaBI GATNNNNATC 2 cut(s) 402, 408
BsaHI GRCGYC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 1 cut(s) 265
Bse8I GATNNNNATC 2 cut(s) 402, 408
BseBI CCWGG 2 cut(s) 29, 589
BseGI GGATG 1 cut(s) 629
BseJI GATNNNNATC 2 cut(s) 402, 408
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 7 cut(s) 79, 160, 362, 463, 558, 591, 651
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 2 cut(s) 334, 441
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 499
BsmAI GTCTC 2 cut(s) 39, 592
BsmBI CGTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 2 cut(s) 334, 441
Bsp1286I GDGCHC 2 cut(s) 391, 493
Bsp143I GATC 7 cut(s) 212, 217, 397, 403, 418, 531, 621
Bsp1720I GCTNAGC 1 cut(s) 657
Bsp68I TCGCGA 1 cut(s) 414
BspACI CCGC 7 cut(s) 90, 171, 177, 442, 474, 574, 661
BspANI GGCC 2 cut(s) 334, 441
BspCNI CTCAG 1 cut(s) 670
BspFNI CGCG 1 cut(s) 414
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 504, 642
BspPI GGATC 1 cut(s) 426
BsrI ACTGG 1 cut(s) 265
BssMI GATC 7 cut(s) 212, 217, 397, 403, 418, 531, 621
BssNI GRCGYC 1 cut(s) 32
Bst2UI CCWGG 2 cut(s) 29, 589
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 361
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 52, 481, 609
BstDEI CTNAG 1 cut(s) 657
BstF5I GGATG 1 cut(s) 629
BstFNI CGCG 1 cut(s) 414
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 7 cut(s) 215, 220, 400, 406, 421, 534, 624
BstMAI GTCTC 2 cut(s) 39, 592
BstMBI GATC 7 cut(s) 212, 217, 397, 403, 418, 531, 621
BstMWI GCNNNNNNNGC 1 cut(s) 450
BstNI CCWGG 2 cut(s) 29, 589
BstSCI CCNGG 2 cut(s) 27, 587
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 7 cut(s) 79, 160, 362, 463, 558, 591, 651
BstV2I GAAGAC 1 cut(s) 355
BsuRI GGCC 2 cut(s) 334, 441
BtsCI GGATG 1 cut(s) 629
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 258
BtuMI TCGCGA 1 cut(s) 414
Cac8I GCNNGC 3 cut(s) 52, 481, 609
CaiI CAGNNNCTG 1 cut(s) 664
CciI TCATGA 1 cut(s) 400
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 2 cut(s) 263, 333
CseI GACGC 1 cut(s) 21
Csp6I GTAC 3 cut(s) 138, 183, 306
CviAII CATG 2 cut(s) 401, 454
CviQI GTAC 3 cut(s) 138, 183, 306
DdeI CTNAG 1 cut(s) 657
DpnI GATC 7 cut(s) 214, 219, 399, 405, 420, 533, 623
DpnII GATC 7 cut(s) 212, 217, 397, 403, 418, 531, 621
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco24I GRGCYC 2 cut(s) 391, 493
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 27, 587
EcoT38I GRGCYC 2 cut(s) 391, 493
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 2 cut(s) 404, 457
FaiI YATR 4 cut(s) 402, 447, 455, 540
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 400, 453
FauI CCCGC 2 cut(s) 178, 567
FbaI TGATCA 3 cut(s) 397, 403, 621
FokI GGATG 1 cut(s) 616
FriOI GRGCYC 2 cut(s) 391, 493
FspBI CTAG 7 cut(s) 135, 180, 246, 303, 309, 330, 392
GlaI GCGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 469
HaeIII GGCC 2 cut(s) 334, 441
HgaI GACGC 1 cut(s) 21
HhaI GCGC 1 cut(s) 453
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 404, 457
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HinfI GANTC 3 cut(s) 208, 463, 470
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 217, 692
Hpy188III TCNNGA 7 cut(s) 116, 392, 401, 413, 467, 486, 595
HpyAV CCTTC 1 cut(s) 378
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 378, 566, 607
HpyF10VI GCNNNNNNNGC 1 cut(s) 450
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 1 cut(s) 110
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 404, 457
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 3 cut(s) 397, 403, 621
Kzo9I GATC 7 cut(s) 212, 217, 397, 403, 418, 531, 621
LmnI GCTCC 3 cut(s) 488, 646, 709
Lsp1109I GCAGC 7 cut(s) 79, 160, 362, 463, 558, 591, 651
LweI GCATC 1 cut(s) 114
MaeI CTAG 7 cut(s) 135, 180, 246, 303, 309, 330, 392
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 44, 313
MalI GATC 7 cut(s) 214, 219, 399, 405, 420, 533, 623
MboI GATC 7 cut(s) 212, 217, 397, 403, 418, 531, 621
MboII GAAGA 4 cut(s) 17, 348, 355, 472
MhlI GDGCHC 2 cut(s) 391, 493
MluCI AATT 5 cut(s) 199, 288, 337, 561, 625
MlyI GAGTC 2 cut(s) 202, 479
MmeI TCCRAC 2 cut(s) 174, 531
MnlI CCTC 6 cut(s) 79, 157, 364, 409, 571, 655
MseI TTAA 1 cut(s) 222
MspA1I CMGCKG 6 cut(s) 92, 173, 476, 571, 604, 661
MspR9I CCNGG 2 cut(s) 29, 589
MvaI CCWGG 2 cut(s) 29, 589
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 450
NdeII GATC 7 cut(s) 212, 217, 397, 403, 418, 531, 621
NlaIII CATG 2 cut(s) 404, 457
NlaIV GGNNCC 2 cut(s) 504, 642
NruI TCGCGA 1 cut(s) 414
PagI TCATGA 1 cut(s) 400
PfeI GAWTC 1 cut(s) 463
PleI GAGTC 2 cut(s) 202, 478
PpsI GAGTC 2 cut(s) 202, 478
Psp6I CCWGG 2 cut(s) 27, 587
PspGI CCWGG 2 cut(s) 27, 587
PspN4I GGNNCC 2 cut(s) 504, 642
PspPI GGNCC 2 cut(s) 263, 333
PstNI CAGNNNCTG 1 cut(s) 664
PvuII CAGCTG 2 cut(s) 571, 604
RruI TCGCGA 1 cut(s) 414
RsaI GTAC 3 cut(s) 139, 184, 307
RsaNI GTAC 3 cut(s) 138, 183, 306
SaqAI TTAA 1 cut(s) 222
Sau3AI GATC 7 cut(s) 212, 217, 397, 403, 418, 531, 621
Sau96I GGNCC 2 cut(s) 263, 333
ScaI AGTACT 3 cut(s) 139, 184, 307
SchI GAGTC 2 cut(s) 202, 479
ScrFI CCNGG 2 cut(s) 29, 589
SduI GDGCHC 2 cut(s) 391, 493
SetI ASST 6 cut(s) 71, 113, 508, 573, 606, 706
SfaNI GCATC 1 cut(s) 114
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
SpeI ACTAGT 4 cut(s) 134, 245, 302, 308
Sse9I AATT 5 cut(s) 199, 288, 337, 561, 625
SsiI CCGC 7 cut(s) 90, 171, 177, 442, 474, 574, 661
SspMI CTAG 7 cut(s) 135, 180, 246, 303, 309, 330, 392
StyD4I CCNGG 2 cut(s) 27, 587
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 113
TaqI TCGA 4 cut(s) 156, 211, 466, 617
TasI AATT 5 cut(s) 199, 288, 337, 561, 625
TatI WGTACW 3 cut(s) 137, 182, 305
TauI GCSGC 4 cut(s) 92, 179, 444, 664
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 2 cut(s) 91, 265
TseI GCWGC 7 cut(s) 92, 173, 375, 476, 571, 604, 664
TspDTI ATGAA 3 cut(s) 473, 513, 618
TspRI CASTG 2 cut(s) 91, 265
VpaK11BI GGWCC 1 cut(s) 263
XbaI TCTAGA 1 cut(s) 391
XspI CTAG 7 cut(s) 135, 180, 246, 303, 309, 330, 392
ZrmI AGTACT 3 cut(s) 139, 184, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.