Rh7BG017300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000739
Physical Location & Seq
Forward (+)
1125195 .. 1125476
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG017300.1

Sequence Viewer

Length: 282 bp
ATGGCGGCTGCGAAGATGGTGCGGCATGGTTTTGAGTCTAGCAGCAATGTGGATTTGTCTGGGCGGCTCGATAGTGGTGGAGGGAGTGAGGTTAGCAAGCCTTCTGGTTGTTTCATGTTTCTACCAACGAAGTTCGAACCAGGGGGATTGGATCTGGTTTTGGTGGTGTTTACCGATGTTGTCCGGGTCGCAGAGGATGGCGGCGATAAGGTGGCTGGTCTGGACGGTGGTAGCAGCTCCGGCGGACTTTGTTGCTGTCGGTGGAGTTTCTGTGCAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.48

Weight (kDa)

4.87

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 5, 22, 64, 201, 243
AclWI GGATC 1 cut(s) 159
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
AlwI GGATC 1 cut(s) 159
ApeKI GCWGC 3 cut(s) 8, 42, 234
AsuC2I CCSGG 1 cut(s) 185
AsuII TTCGAA 1 cut(s) 135
BbvI GCAGC 2 cut(s) 54, 246
BccI CCATC 2 cut(s) 10, 191
BcgI CGANNNNNNTGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 141
BcnI CCSGG 1 cut(s) 185
BfaI CTAG 2 cut(s) 39, 280
BisI GCNGC 7 cut(s) 6, 9, 23, 43, 65, 202, 235
BlsI GCNGC 7 cut(s) 7, 10, 24, 44, 66, 203, 236
Bme1390I CCNGG 2 cut(s) 141, 185
BmrFI CCNGG 2 cut(s) 141, 185
Bpu14I TTCGAA 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 140
BsaXI ACNNNNNCTCC 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 52
BseXI GCAGC 2 cut(s) 54, 246
BsiSI CCGG 2 cut(s) 184, 240
Bsp119I TTCGAA 1 cut(s) 135
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 5 cut(s) 5, 22, 64, 201, 243
BspPI GGATC 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 98, 277
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 139, 183
BstV1I GCAGC 2 cut(s) 54, 246
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BtsCI GGATG 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 98, 277
CviAII CATG 2 cut(s) 26, 115
CviJI RGCY 6 cut(s) 8, 67, 100, 215, 237, 279
CviKI_1 RGCY 6 cut(s) 8, 67, 100, 215, 237, 279
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
EciI GGCGGA 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 29, 118
FaiI YATR 2 cut(s) 27, 116
FatI CATG 2 cut(s) 25, 114
Fnu4HI GCNGC 7 cut(s) 6, 9, 23, 43, 65, 202, 235
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 7 cut(s) 6, 9, 23, 43, 65, 202, 235
FspBI CTAG 2 cut(s) 39, 280
GluI GCNGC 7 cut(s) 6, 9, 23, 43, 65, 202, 235
HapII CCGG 2 cut(s) 184, 240
Hin1II CATG 2 cut(s) 29, 118
HinfI GANTC 1 cut(s) 35
HpaII CCGG 2 cut(s) 184, 240
Hpy166II GTNNAC 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 29, 118
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 2 cut(s) 54, 246
MaeI CTAG 2 cut(s) 39, 280
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 151
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 3 cut(s) 74, 82, 187
MspI CCGG 2 cut(s) 184, 240
MspR9I CCNGG 2 cut(s) 141, 185
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 240
NciI CCSGG 1 cut(s) 185
NdeII GATC 1 cut(s) 151
NlaIII CATG 2 cut(s) 29, 118
NspV TTCGAA 1 cut(s) 135
PkrI GCNGC 7 cut(s) 7, 10, 24, 44, 66, 203, 236
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PsuI RGATCY 1 cut(s) 151
SatI GCNGC 7 cut(s) 6, 9, 23, 43, 65, 202, 235
Sau3AI GATC 1 cut(s) 151
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 141, 185
SetI ASST 3 cut(s) 93, 213, 239
SfuI TTCGAA 1 cut(s) 135
SsiI CCGC 5 cut(s) 5, 22, 64, 201, 243
SspMI CTAG 2 cut(s) 39, 280
StyD4I CCNGG 2 cut(s) 139, 183
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 2 cut(s) 69, 135
TauI GCSGC 4 cut(s) 8, 25, 67, 204
TseI GCWGC 3 cut(s) 8, 42, 234
TspDTI ATGAA 1 cut(s) 103
XspI CTAG 2 cut(s) 39, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.