RLG00000011081
BZIP Family

regulation of photoperiodism, flowering

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000739
Physical Location & Seq
Forward (+)
6581974 .. 6582845
872 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011081

Sequence Viewer

Length: 678 bp
ATGACGATGGAGGATGTGTGGAAAGACATAAGCCTAGCTTCTCTTTGTGACCACAACTCACCGGCGACTGCTGCCGGCATCTCCGCCTCACGTAACGACTCTGCAGCTATTCGTGGCTTCATTTTTCAAGATTTCATGGCGGCGGCGTCCACCAAACTCACTCCTTCTTCTCTTGCTACTGATCTAGCGCCACTGTCACAGCCACCGGCCACTCTCCTCAGCTTGAGTTCTTCCGGTTCCGATCATTTTCAACAGTACCAAGTTCAAAGCGCTACTGCTACTGCTTGTACCAACACTATTGCTCCACCAATACCAGTGACGCCAAACGCGCAAAGACTGCACTGTATTAGTACTATTCCTTCATCTTCTGTGATCTCTTTCTCCATTAAGCACGCGAATAACTCGTCGGAGGCTTTGGATTCTTCCCCGTCTTGCAAGAAAAGGGCGTTAGAAGAAAATGGAGAGAACTCTAGGCATGTCCGGCATAAGCGGATGATCAAGAACAGAGAATCGGCCTCTCGCTCCCGCGCACGAAAGCAAGCTTATACAAGTGAGCTGGAACTTGAACTAGCACATTTGCGGGAGGAGAATGCCAGACTTAAAAGACAGCAAGAAAAGATCTCCTTAGCAGCCTCTGTAGCAGCAGCAACTCCTCCAAAAAGGGCACACTCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

226

Amino Acids

24.26

Weight (kDa)

9.32

Isoelectric Point (pI)

60.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 161 - 206 5.1e-11 bZIP transcription factor
bZIP_2 PF07716 161 - 206 4e-09 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 329, 395, 528
AciI CCGC 6 cut(s) 84, 140, 143, 490, 526, 580
AcoI YGGCCR 1 cut(s) 207
AcyI GRCGYC 2 cut(s) 146, 320
AdeI CACNNNGTG 1 cut(s) 673
AfaI GTAC 3 cut(s) 257, 289, 352
AfeI AGCGCT 1 cut(s) 271
AgsI TTSAA 4 cut(s) 128, 251, 266, 566
AluBI AGCT 5 cut(s) 38, 107, 222, 542, 556
AluI AGCT 5 cut(s) 38, 107, 222, 542, 556
AlwNI CAGNNNCTG 1 cut(s) 635
Aor51HI AGCGCT 1 cut(s) 271
AoxI GGCC 2 cut(s) 207, 513
ApeKI GCWGC 5 cut(s) 71, 104, 629, 641, 644
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspLEI GCGC 4 cut(s) 190, 272, 331, 530
AsuHPI GGTGA 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 667
BarI GAAGNNNNNNTAC 2 cut(s) 343, 375
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 5 cut(s) 58, 116, 641, 653, 656
BclI TGATCA 1 cut(s) 495
BfaI CTAG 4 cut(s) 35, 185, 471, 569
BfmI CTRYAG 2 cut(s) 102, 636
BfoI RGCGCY 2 cut(s) 191, 273
BglII AGATCT 1 cut(s) 618
BisI GCNGC 7 cut(s) 72, 105, 141, 144, 630, 642, 645
BlsI GCNGC 7 cut(s) 73, 106, 142, 145, 631, 643, 646
BmcAI AGTACT 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 1 cut(s) 87
Bpu10I CCTNAGC 2 cut(s) 218, 625
BpuEI CTTGAG 1 cut(s) 244
BsaAI YACGTR 1 cut(s) 92
BsaHI GRCGYC 2 cut(s) 146, 320
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 3 cut(s) 32, 286, 316
Bse118I RCCGGY 3 cut(s) 61, 74, 205
Bse1I ACTGG 1 cut(s) 314
BseGI GGATG 2 cut(s) 19, 498
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 3 cut(s) 206, 599, 642
BseSI GKGCMC 1 cut(s) 667
BseXI GCAGC 5 cut(s) 58, 116, 641, 653, 656
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 3 cut(s) 329, 395, 528
BshFI GGCC 2 cut(s) 209, 515
BsiSI CCGG 5 cut(s) 62, 75, 206, 234, 481
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 2 cut(s) 209, 515
Bsp1286I GDGCHC 1 cut(s) 667
Bsp143I GATC 5 cut(s) 181, 241, 372, 495, 618
BspACI CCGC 6 cut(s) 84, 140, 143, 490, 526, 580
BspANI GGCC 2 cut(s) 209, 515
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 3 cut(s) 329, 395, 528
BspLI GGNNCC 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 106
BsrFI RCCGGY 3 cut(s) 61, 74, 205
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 3 cut(s) 61, 74, 205
BssMI GATC 5 cut(s) 181, 241, 372, 495, 618
BssNI GRCGYC 2 cut(s) 146, 320
Bst4CI ACNGT 3 cut(s) 195, 255, 344
BstACI GRCGYC 2 cut(s) 146, 320
BstAPI GCANNNNNTGC 1 cut(s) 337
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 76, 393, 540
BstDEI CTNAG 2 cut(s) 218, 625
BstF5I GGATG 2 cut(s) 19, 498
BstFNI CGCG 3 cut(s) 329, 395, 528
BstH2I RGCGCY 2 cut(s) 191, 273
BstHHI GCGC 4 cut(s) 190, 272, 331, 530
BstKTI GATC 5 cut(s) 184, 244, 375, 498, 621
BstMBI GATC 5 cut(s) 181, 241, 372, 495, 618
BstMWI GCNNNNNNNGC 5 cut(s) 71, 328, 337, 481, 638
BstNSI RCATGY 1 cut(s) 479
BstSFI CTRYAG 2 cut(s) 102, 636
BstSLI GKGCMC 1 cut(s) 667
BstUI CGCG 3 cut(s) 329, 395, 528
BstV1I GCAGC 5 cut(s) 58, 116, 641, 653, 656
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
BsuRI GGCC 2 cut(s) 209, 515
BtsCI GGATG 2 cut(s) 19, 498
BtsIMutI CAGTG 3 cut(s) 191, 321, 340
Cac8I GCNNGC 3 cut(s) 76, 393, 540
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 4 cut(s) 190, 272, 331, 530
Cfr10I RCCGGY 3 cut(s) 61, 74, 205
CseI GACGC 2 cut(s) 135, 328
Csp6I GTAC 3 cut(s) 256, 288, 351
CviAII CATG 2 cut(s) 136, 476
CviQI GTAC 3 cut(s) 256, 288, 351
DdeI CTNAG 2 cut(s) 218, 625
DpnI GATC 5 cut(s) 183, 243, 374, 497, 620
DpnII GATC 5 cut(s) 181, 241, 372, 495, 618
DraIII CACNNNGTG 1 cut(s) 673
EaeI YGGCCR 1 cut(s) 207
EciI GGCGGA 1 cut(s) 73
Eco47III AGCGCT 1 cut(s) 271
FaeI CATG 2 cut(s) 139, 479
FaiI YATR 5 cut(s) 29, 137, 477, 486, 546
FalI AAGNNNNNCTT 4 cut(s) 22, 54, 608, 640
FatI CATG 2 cut(s) 135, 475
FauI CCCGC 2 cut(s) 533, 573
FbaI TGATCA 1 cut(s) 495
Fnu4HI GCNGC 7 cut(s) 72, 105, 141, 144, 630, 642, 645
FokI GGATG 2 cut(s) 26, 505
Fsp4HI GCNGC 7 cut(s) 72, 105, 141, 144, 630, 642, 645
FspBI CTAG 4 cut(s) 35, 185, 471, 569
GlaI GCGC 4 cut(s) 189, 271, 330, 529
GluI GCNGC 7 cut(s) 72, 105, 141, 144, 630, 642, 645
HaeII RGCGCY 2 cut(s) 191, 273
HaeIII GGCC 2 cut(s) 209, 515
HapII CCGG 5 cut(s) 62, 75, 206, 234, 481
HgaI GACGC 2 cut(s) 135, 328
HhaI GCGC 4 cut(s) 190, 272, 331, 530
Hin1I GRCGYC 2 cut(s) 146, 320
Hin1II CATG 2 cut(s) 139, 479
Hin6I GCGC 4 cut(s) 188, 270, 329, 528
HinP1I GCGC 4 cut(s) 188, 270, 329, 528
HindIII AAGCTT 1 cut(s) 540
HinfI GANTC 3 cut(s) 98, 419, 509
HpaII CCGG 5 cut(s) 62, 75, 206, 234, 481
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 241, 409
Hpy188III TCNNGA 2 cut(s) 128, 499
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 2 cut(s) 174, 369
HpyCH4III ACNGT 3 cut(s) 195, 255, 344
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 104, 340, 435
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 328, 337, 481, 638
HpyF3I CTNAG 2 cut(s) 218, 625
HpySE526I ACGT 1 cut(s) 91
Hsp92I GRCGYC 2 cut(s) 146, 320
Hsp92II CATG 2 cut(s) 139, 479
HspAI GCGC 4 cut(s) 188, 270, 329, 528
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 5 cut(s) 181, 241, 372, 495, 618
LmnI GCTCC 2 cut(s) 307, 527
LpnPI CCDG 8 cut(s) 75, 88, 219, 247, 327, 494, 542, 607
Lsp1109I GCAGC 5 cut(s) 58, 116, 641, 653, 656
LweI GCATC 1 cut(s) 87
MaeI CTAG 4 cut(s) 35, 185, 471, 569
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 4 cut(s) 47, 92, 195, 316
MalI GATC 5 cut(s) 183, 243, 374, 497, 620
MboI GATC 5 cut(s) 181, 241, 372, 495, 618
MboII GAAGA 5 cut(s) 159, 222, 357, 414, 464
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 1 cut(s) 667
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 8 cut(s) 4, 97, 227, 403, 526, 577, 643, 663
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 2 cut(s) 387, 600
MspI CCGG 5 cut(s) 62, 75, 206, 234, 481
Mva1269I GAATGC 1 cut(s) 595
MvnI CGCG 3 cut(s) 329, 395, 528
MwoI GCNNNNNNNGC 5 cut(s) 71, 328, 337, 481, 638
NaeI GCCGGC 1 cut(s) 76
NdeII GATC 5 cut(s) 181, 241, 372, 495, 618
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 139, 479
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 3 cut(s) 47, 195, 316
NspI RCATGY 1 cut(s) 479
PctI GAATGC 1 cut(s) 595
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 419, 509
PkrI GCNGC 7 cut(s) 73, 106, 142, 145, 631, 643, 646
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 238
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 1 cut(s) 618
RsaI GTAC 3 cut(s) 257, 289, 352
RsaNI GTAC 3 cut(s) 256, 288, 351
SaqAI TTAA 2 cut(s) 387, 600
SatI GCNGC 7 cut(s) 72, 105, 141, 144, 630, 642, 645
Sau3AI GATC 5 cut(s) 181, 241, 372, 495, 618
ScaI AGTACT 1 cut(s) 352
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 667
SetI ASST 6 cut(s) 40, 94, 109, 224, 544, 558
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 2 cut(s) 102, 636
SgrAI CRCCGGYG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SsiI CCGC 6 cut(s) 84, 140, 143, 490, 526, 580
SspMI CTAG 4 cut(s) 35, 185, 471, 569
TaaI ACNGT 3 cut(s) 195, 255, 344
TaiI ACGT 1 cut(s) 94
TatI WGTACW 1 cut(s) 350
TauI GCSGC 2 cut(s) 143, 146
TfiI GAWTC 2 cut(s) 419, 509
Tru1I TTAA 2 cut(s) 387, 600
Tru9I TTAA 2 cut(s) 387, 600
TscAI CASTG 3 cut(s) 198, 321, 347
TseFI GTSAC 3 cut(s) 47, 195, 316
TseI GCWGC 5 cut(s) 71, 104, 629, 641, 644
Tsp45I GTSAC 3 cut(s) 47, 195, 316
TspDTI ATGAA 3 cut(s) 109, 124, 351
TspRI CASTG 3 cut(s) 198, 321, 347
XceI RCATGY 1 cut(s) 479
XspI CTAG 4 cut(s) 35, 185, 471, 569
ZrmI AGTACT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.