FvH4_1g11270
BZIP Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000739
Physical Location & Seq
Reverse (-)
6144063 .. 6145610
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11270.t2

Sequence Viewer

Length: 795 bp
ATGATGTCCTCAACTGGTAGTGAAGAAACCTACTACAACTCATCCTCCTGGTCTTCCTCCACCACAACACCCCCTTCTCCATTCTCTCAGGCAACCCCAAGAAGCAGAACCATGGAGGAGGTCTGGAAAGACATCAACCTCGCCTCGCTTTCCAACGCCAACAACAGTCCCAACTTCAGAAACATGACCCTCCAGGACTTTCTCGCTAGGCCCTTTGCCAATGTGGTCTCTCCCACACCTGATCACCACCATCACAACAACAACAACCACATCACTCTTAACTCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCAGCCACTGTTCTGAGCTTGAACCATTTGGACTCTGATCAGTTTCAGCTCTTCTGTATTGAGAATCTCAATACTACTAGGCCTTTTGTCAACCTCAACCACCCCAATACTAGTACTGTTTCCGAGAAATCTTTCAATGGTGCTTACCCTTTCGAGGGTCTTGGAAGCCAATCTTCTCCTTCTCCTGGGTTGGTTATGCCGTCGGGTTTTGGCTACGGGAATGAGAGGTTACCGGAACCTGATGATCGTAGCAACTTCGGAGGAGGAGATAGGAGGCACAAGCGGATGATCAAGAATAGAGAATCTGCTGCAAGATCCAGAGCAAGGAAGCAGGCTTACACGAACGACCTGGAGATTAGGATTCAGCTTTTGATGGAAGAGAATGAGAGGCTGAGAAGAGAGAATGAACAGTTAAGTGATGCAGCAGCTTCTCAACTGCCCAAAAAGCACAGTCTGAATCGATCATCAACAGCACCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

265

Amino Acids

29.47

Weight (kDa)

7.15

Isoelectric Point (pI)

77.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 195 - 245 6.5e-14 bZIP transcription factor
bZIP_2 PF07716 195 - 244 3.3e-11 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 595
AclWI GGATC 1 cut(s) 621
AcuI CTGAAG 1 cut(s) 160
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 4 cut(s) 466, 467, 497, 636
AgsI TTSAA 2 cut(s) 334, 448
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 4 cut(s) 47, 192, 496, 660
AluBI AGCT 4 cut(s) 330, 361, 679, 740
AluI AGCT 4 cut(s) 330, 361, 679, 740
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 621
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 2 cut(s) 209, 392
ApeKI GCWGC 3 cut(s) 620, 734, 737
Asp700I GAANNNNTTC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 607, 746, 749
BccI CCATC 2 cut(s) 258, 679
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 4 cut(s) 49, 194, 498, 662
BclI TGATCA 3 cut(s) 241, 349, 600
BcoDI GTCTC 1 cut(s) 232
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 3 cut(s) 207, 390, 423
BisI GCNGC 3 cut(s) 621, 735, 738
BlsI GCNGC 3 cut(s) 622, 736, 739
BmcAI AGTACT 1 cut(s) 427
Bme1390I CCNGG 4 cut(s) 49, 194, 498, 662
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 4 cut(s) 49, 194, 498, 662
BmsI GCATC 1 cut(s) 721
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 2 cut(s) 176, 683
Bsa29I ATCGAT 1 cut(s) 772
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 2 cut(s) 111, 497
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 4 cut(s) 466, 467, 497, 636
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 4 cut(s) 49, 194, 498, 662
BseCI ATCGAT 1 cut(s) 772
BseDI CCNNGG 2 cut(s) 111, 497
BseGI GGATG 2 cut(s) 41, 603
BseLI CCNNNNNNNGG 4 cut(s) 466, 467, 497, 636
BseMII CTCAG 3 cut(s) 101, 317, 695
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 3 cut(s) 607, 746, 749
BseYI CCCAGC 1 cut(s) 313
BshFI GGCC 2 cut(s) 211, 394
BshVI ATCGAT 1 cut(s) 772
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 4 cut(s) 466, 467, 497, 636
BsmAI GTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 2 cut(s) 211, 394
Bso31I GGTCTC 1 cut(s) 232
Bsp143I GATC 6 cut(s) 241, 349, 556, 600, 626, 773
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 1 cut(s) 595
BspANI GGCC 2 cut(s) 211, 394
BspCNI CTCAG 3 cut(s) 100, 318, 696
BspDI ATCGAT 1 cut(s) 772
BspLI GGNNCC 1 cut(s) 549
BspPI GGATC 1 cut(s) 621
BspQI GCTCTTC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 232
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 111, 497
BssMI GATC 6 cut(s) 241, 349, 556, 600, 626, 773
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 4 cut(s) 49, 194, 498, 662
Bst4CI ACNGT 5 cut(s) 167, 322, 430, 723, 764
Bst6I CTCTTC 3 cut(s) 368, 684, 703
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 3 cut(s) 87, 326, 704
BstDSI CCRYGG 1 cut(s) 111
BstEII GGTNACC 1 cut(s) 540
BstF5I GGATG 2 cut(s) 41, 603
BstKTI GATC 6 cut(s) 244, 352, 559, 603, 629, 776
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 6 cut(s) 241, 349, 556, 600, 626, 773
BstMWI GCNNNNNNNGC 1 cut(s) 757
BstNI CCWGG 4 cut(s) 49, 194, 498, 662
BstPI GGTNACC 1 cut(s) 540
BstSCI CCNGG 4 cut(s) 47, 192, 496, 660
BstV1I GCAGC 3 cut(s) 607, 746, 749
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 626
BstYI RGATCY 1 cut(s) 626
Bsu15I ATCGAT 1 cut(s) 772
BsuRI GGCC 2 cut(s) 211, 394
BsuTUI ATCGAT 1 cut(s) 772
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 41, 603
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 645
CaiI CAGNNNCTG 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 210
ClaI ATCGAT 1 cut(s) 772
Csp6I GTAC 1 cut(s) 426
CviAII CATG 2 cut(s) 112, 184
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 3 cut(s) 87, 326, 704
DpnI GATC 6 cut(s) 243, 351, 558, 602, 628, 775
DpnII GATC 6 cut(s) 241, 349, 556, 600, 626, 773
Eam1104I CTCTTC 3 cut(s) 368, 684, 703
EarI CTCTTC 3 cut(s) 368, 684, 703
Eco130I CCWWGG 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 160
Eco91I GGTNACC 1 cut(s) 540
EcoO109I RGGNCCY 1 cut(s) 210
EcoO65I GGTNACC 1 cut(s) 540
EcoRII CCWGG 4 cut(s) 47, 192, 496, 660
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 115, 187
FaiI YATR 3 cut(s) 113, 185, 509
FalI AAGNNNNNCTT 2 cut(s) 469, 501
FaqI GGGAC 1 cut(s) 153
FatI CATG 2 cut(s) 111, 183
FbaI TGATCA 3 cut(s) 241, 349, 600
Fnu4HI GCNGC 3 cut(s) 621, 735, 738
FokI GGATG 2 cut(s) 28, 610
Fsp4HI GCNGC 3 cut(s) 621, 735, 738
FspBI CTAG 3 cut(s) 207, 390, 423
GluI GCNGC 3 cut(s) 621, 735, 738
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 2 cut(s) 176, 683
HaeIII GGCC 2 cut(s) 211, 394
HapII CCGG 1 cut(s) 545
Hin1II CATG 2 cut(s) 115, 187
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 5 cut(s) 344, 376, 614, 673, 769
HpaII CCGG 1 cut(s) 545
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 6 cut(s) 179, 327, 349, 436, 572, 768
Hpy188III TCNNGA 3 cut(s) 124, 604, 630
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 1 cut(s) 517
HpyAV CCTTC 2 cut(s) 84, 501
HpyCH4III ACNGT 5 cut(s) 167, 322, 430, 723, 764
HpyCH4V TGCA 2 cut(s) 623, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 757
HpyF3I CTNAG 3 cut(s) 87, 326, 704
Hsp92II CATG 2 cut(s) 115, 187
Ksp22I TGATCA 3 cut(s) 241, 349, 600
Kzo9I GATC 6 cut(s) 241, 349, 556, 600, 626, 773
LguI GCTCTTC 1 cut(s) 368
Lsp1109I GCAGC 3 cut(s) 607, 746, 749
LweI GCATC 1 cut(s) 721
MaeI CTAG 3 cut(s) 207, 390, 423
MaeIII GTNAC 1 cut(s) 540
MalI GATC 6 cut(s) 243, 351, 558, 602, 628, 775
MboI GATC 6 cut(s) 241, 349, 556, 600, 626, 773
MboII GAAGA 6 cut(s) 35, 45, 355, 477, 701, 720
MflI RGATCY 1 cut(s) 626
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 177
MroXI GAANNNNTTC 1 cut(s) 443
MseI TTAA 2 cut(s) 279, 725
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 4 cut(s) 49, 194, 498, 662
MvaI CCWGG 4 cut(s) 49, 194, 498, 662
MwoI GCNNNNNNNGC 1 cut(s) 757
NcoI CCATGG 1 cut(s) 111
NdeII GATC 6 cut(s) 241, 349, 556, 600, 626, 773
NlaIII CATG 2 cut(s) 115, 187
NlaIV GGNNCC 1 cut(s) 549
PceI AGGCCT 1 cut(s) 394
PciSI GCTCTTC 1 cut(s) 368
PdmI GAANNNNTTC 1 cut(s) 443
PfeI GAWTC 4 cut(s) 376, 614, 673, 769
PfoI TCCNGGA 1 cut(s) 192
PkrI GCNGC 3 cut(s) 622, 736, 739
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 4 cut(s) 47, 192, 496, 660
PspEI GGTNACC 1 cut(s) 540
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 4 cut(s) 47, 192, 496, 660
PspN4I GGNNCC 1 cut(s) 549
PspPI GGNCC 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 320
PsuI RGATCY 1 cut(s) 626
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 279, 725
SatI GCNGC 3 cut(s) 621, 735, 738
Sau3AI GATC 6 cut(s) 241, 349, 556, 600, 626, 773
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 427
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 4 cut(s) 49, 194, 498, 662
SfaNI GCATC 1 cut(s) 721
SpeI ACTAGT 1 cut(s) 422
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 1 cut(s) 595
SspMI CTAG 3 cut(s) 207, 390, 423
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 4 cut(s) 47, 192, 496, 660
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 5 cut(s) 167, 322, 430, 723, 764
TaqI TCGA 2 cut(s) 465, 772
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 4 cut(s) 376, 614, 673, 769
Tru1I TTAA 2 cut(s) 279, 725
Tru9I TTAA 2 cut(s) 279, 725
TscAI CASTG 1 cut(s) 325
TseI GCWGC 3 cut(s) 620, 734, 737
TspDTI ATGAA 1 cut(s) 732
TspRI CASTG 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 3 cut(s) 207, 390, 423
ZrmI AGTACT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.