Rh2CG345200
BZIP Family

ABSCISIC ACID-INSENSITIVE 5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000739
Physical Location & Seq
Reverse (-)
46488067 .. 46504060
15994 bp
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UTR
Exon/CDS
Intron
Rh2CG345200.1

Sequence Viewer

Length: 726 bp
ATGTCACAATCTGTCCTGGTCTTAATGATGTCATCAGACAGATGGCAGAAGAGAATGATAAAGAACGGGGAATCTGCTGCTCGTTCACGTGTAAGGAAGCAGGCTTATACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAGGAGGAAAATGAAAGGCTAAGGAAGCAAAAGCATTGTGTGTTGAATTGTGTAGCTCAACAGAAGTTGGATCAAGAAATTAAAGAGCGTGAAGAGAAGTACTCTGATCTTGACTCGAAATTCACCAGGCTTCACAAACGAGCAAAGCAGGCTATTCAAGATGTTCAAAAGGAAAAAGATGACATTGAGGCTCGATTTCGTGAAGTAAATGAAAGAGCTGAGCGAGCATTATCCCAACAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAACAAGCAAACGATGCACTGAAAGCAATTGATGCTGAGAGACAACAATTAAGAAGTGCAAATAATAAACTACGAGTCAACCTGGAGGAATTGCGAAATGCATTGCAACCAAAAGAGAGTGCTATCGAGGCACTGCAACATACAATTTCGGAGAAGGATCAGGTAGCTGTTGCTTGGGAGAAAGCTGCACAATCTGATGAGTATTTTGTTAAGAGAAAGCTGTATCCAAATGTTGATTTCTACACTGGGGTAATACCACACAAGGTGGTACTTCACCGAGAAATATCGAGTAAGTGCTACTACATCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

241

Amino Acids

28.37

Weight (kDa)

9.08

Isoelectric Point (pI)

66.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 12 - 57 2.8e-11 Basic region leucine zipper
bZIP_1 PF00170 14 - 57 3e-11 bZIP transcription factor
Citrate_synt PF00285 190 - 231 4.1e-07 Citrate synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 219, 579
AcsI RAATTY 1 cut(s) 260
AcvI CACGTG 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 679
AfaI GTAC 2 cut(s) 242, 684
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 3 cut(s) 187, 299, 308
AjiI CACGTC 1 cut(s) 137
AjnI CCWGG 4 cut(s) 15, 266, 410, 495
AluBI AGCT 6 cut(s) 197, 359, 400, 581, 599, 634
AluI AGCT 6 cut(s) 197, 359, 400, 581, 599, 634
Alw26I GTCTC 1 cut(s) 448
AlwI GGATC 2 cut(s) 219, 579
ApeKI GCWGC 3 cut(s) 77, 391, 599
ApoI RAATTY 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 256, 680
BbrPI CACGTG 1 cut(s) 89
BbvI GCAGC 3 cut(s) 64, 403, 586
BccI CCATC 1 cut(s) 36
BciT130I CCWGG 4 cut(s) 17, 268, 412, 497
BciVI GTATCC 1 cut(s) 648
BcoDI GTCTC 1 cut(s) 448
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 3 cut(s) 78, 392, 600
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 3 cut(s) 79, 393, 601
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 4 cut(s) 17, 268, 412, 497
BmgBI CACGTC 1 cut(s) 137
BmrFI CCNGG 4 cut(s) 17, 268, 412, 497
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 2 cut(s) 418, 436
BmuI ACTGGG 1 cut(s) 669
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 3 cut(s) 140, 161, 518
Bpu10I CCTNAGC 1 cut(s) 161
Bpu1102I GCTNAGC 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 123, 664
Bse3DI GCAATG 2 cut(s) 386, 515
BseBI CCWGG 4 cut(s) 17, 268, 412, 497
BseMI GCAATG 2 cut(s) 386, 515
BseMII CTCAG 2 cut(s) 351, 441
BseNI ACTGG 2 cut(s) 123, 664
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 3 cut(s) 64, 403, 586
BsgI GTGCAG 1 cut(s) 585
BsmAI GTCTC 1 cut(s) 448
Bsp143I GATC 3 cut(s) 211, 247, 571
Bsp1720I GCTNAGC 1 cut(s) 360
BspCNI CTCAG 2 cut(s) 352, 442
BspPI GGATC 2 cut(s) 219, 579
BsrDI GCAATG 2 cut(s) 386, 515
BsrI ACTGG 2 cut(s) 123, 664
BssMI GATC 3 cut(s) 211, 247, 571
Bst2UI CCWGG 4 cut(s) 17, 268, 412, 497
Bst4CI ACNGT 1 cut(s) 381
Bst6I CTCTTC 2 cut(s) 44, 228
BstAPI GCANNNNNTGC 2 cut(s) 428, 446
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 102, 291, 366
BstDEI CTNAG 3 cut(s) 161, 360, 450
BstKTI GATC 3 cut(s) 214, 250, 574
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 3 cut(s) 211, 247, 571
BstMWI GCNNNNNNNGC 8 cut(s) 166, 290, 365, 397, 428, 437, 446, 542
BstNI CCWGG 4 cut(s) 17, 268, 412, 497
BstSCI CCNGG 4 cut(s) 15, 266, 410, 495
BstV1I GCAGC 3 cut(s) 64, 403, 586
BsuI GTATCC 1 cut(s) 648
BtrI CACGTC 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 545
BtsIMutI CAGTG 3 cut(s) 431, 545, 657
Cac8I GCNNGC 3 cut(s) 102, 291, 366
Csp6I GTAC 2 cut(s) 241, 683
CviQI GTAC 2 cut(s) 241, 683
DdeI CTNAG 3 cut(s) 161, 360, 450
DpnI GATC 3 cut(s) 213, 249, 573
DpnII GATC 3 cut(s) 211, 247, 571
DraIII CACNNNGTG 1 cut(s) 679
Eam1104I CTCTTC 2 cut(s) 44, 228
EarI CTCTTC 2 cut(s) 44, 228
Eco72I CACGTG 1 cut(s) 89
EcoRII CCWGG 4 cut(s) 15, 266, 410, 495
EcoT22I ATGCAT 1 cut(s) 517
FaiI YATR 2 cut(s) 108, 555
Fnu4HI GCNGC 3 cut(s) 78, 392, 600
Fsp4HI GCNGC 3 cut(s) 78, 392, 600
GluI GCNGC 3 cut(s) 78, 392, 600
GsuI CTGGAG 3 cut(s) 140, 161, 518
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 3 cut(s) 71, 254, 489
HphI GGTGA 2 cut(s) 256, 680
Hpy166II GTNNAC 2 cut(s) 86, 493
Hpy188I TCNGA 4 cut(s) 37, 247, 565, 610
Hpy188III TCNNGA 5 cut(s) 140, 215, 251, 299, 341
Hpy8I GTNNAC 2 cut(s) 86, 493
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4IV ACGT 2 cut(s) 88, 136
HpyCH4V TGCA 7 cut(s) 391, 431, 473, 515, 520, 550, 602
HpyF10VI GCNNNNNNNGC 8 cut(s) 166, 290, 365, 397, 428, 437, 446, 542
HpyF3I CTNAG 3 cut(s) 161, 360, 450
HpySE526I ACGT 2 cut(s) 88, 136
Kzo9I GATC 3 cut(s) 211, 247, 571
Lsp1109I GCAGC 3 cut(s) 64, 403, 586
LweI GCATC 2 cut(s) 418, 436
MaeII ACGT 2 cut(s) 88, 136
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 213, 249, 573
MboI GATC 3 cut(s) 211, 247, 571
MboII GAAGA 2 cut(s) 61, 245
MfeI CAATTG 1 cut(s) 441
MluCI AATT 7 cut(s) 187, 219, 260, 441, 461, 503, 558
MlyI GAGTC 2 cut(s) 248, 498
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 5 cut(s) 136, 139, 322, 493, 535
Mph1103I ATGCAT 1 cut(s) 517
MseI TTAA 4 cut(s) 23, 222, 464, 624
MspR9I CCNGG 4 cut(s) 17, 268, 412, 497
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 4 cut(s) 17, 268, 412, 497
MwoI GCNNNNNNNGC 8 cut(s) 166, 290, 365, 397, 428, 437, 446, 542
NdeII GATC 3 cut(s) 211, 247, 571
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 517
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 79, 393, 601
PleI GAGTC 2 cut(s) 248, 497
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
PpsI GAGTC 2 cut(s) 248, 497
Ppu21I YACGTR 1 cut(s) 89
Psp6I CCWGG 4 cut(s) 15, 266, 410, 495
PspCI CACGTG 1 cut(s) 89
PspGI CCWGG 4 cut(s) 15, 266, 410, 495
RsaI GTAC 2 cut(s) 242, 684
RsaNI GTAC 2 cut(s) 241, 683
SaqAI TTAA 4 cut(s) 23, 222, 464, 624
SatI GCNGC 3 cut(s) 78, 392, 600
Sau3AI GATC 3 cut(s) 211, 247, 571
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 2 cut(s) 248, 498
ScrFI CCNGG 4 cut(s) 17, 268, 412, 497
SfaNI GCATC 2 cut(s) 418, 436
Sse9I AATT 7 cut(s) 187, 219, 260, 441, 461, 503, 558
StyD4I CCNGG 4 cut(s) 15, 266, 410, 495
TaaI ACNGT 1 cut(s) 381
TaiI ACGT 2 cut(s) 91, 139
TaqI TCGA 5 cut(s) 257, 334, 540, 701, 720
TasI AATT 7 cut(s) 187, 219, 260, 441, 461, 503, 558
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 4 cut(s) 23, 222, 464, 624
Tru9I TTAA 4 cut(s) 23, 222, 464, 624
TscAI CASTG 3 cut(s) 438, 552, 664
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 77, 391, 599
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 129, 168, 366
TspRI CASTG 3 cut(s) 438, 552, 664
XapI RAATTY 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.