Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

19851686 .. 19853266

Gene Structure 1581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1240800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAAGAGGTTTGGAAAGACTTCAATCTTGCCTCTCTCACTGATCCCACCACCCAAATCAGATCCTCATCCTCCACCTCACCACTCCTCCAAATTAACCTCCCCAATGGGCCCCACCAGGGCCACCACCACCACCCAAACTTCAGAAATATGACCCTTCAAGACTTCCTTGCCAGACCCTTTGCCCATGACTCACCAGCAGCAGCAGCCGCCTTGGTCTCCGCCGCTGCAAGCCCTCCCTCTCCTCTTGCTCCAGCCGCCCCAACTCTTCTCGGCCTGAACAATCCTGGCTCAGAGTTTCAGCTCTTTTATGCCTCTGACTCCCTCAGGCCTCCGAGCTCCGGCTTCATTGATCATCATCAGGCAAACCATAATAACATTTCTAGCAGTGTTTCTAACTCTTTCAGTGGTTGCCCATTTGAGAGCTTGGCTGCTTCCTCCTTCGGCTTGCCTTCTTTTGGAAAGAGATCATTCACTGAATCTGATAACAGCAATTCCGGTGGAGATCGAAGACATAAGCGTATGATCAAGAACCGAGATTCTGCTGCTCGATCTAGGGCTAGAAAGCAGGAATGTATCTCTCCAGTATTGGCTTACACAAATGAGTTGGAGTTAAAAGTTGCACATTTGATGGAAGAGAATGCAAGACTCAAGGGACAGCTAGAACAGTTAATTGCAGCAGCGTCTCAACAACCCAAAAGGCACAATCTTCATCGAACATCAACAGCTCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

246

Amino Acids

26.67

Weight (kDa)

9.03

Isoelectric Point (pI)

73.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	170 - 224	4.5e-08	bZIP transcription factor
bZIP_2	PF07716	170 - 224	3.1e-06	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	210, 222, 225, 258
AclWI	GGATC	2 cut(s)	38, 57
AcuI	CTGAAG	1 cut(s)	127
AfiI	CCNNNNNNNGG	3 cut(s)	119, 341, 458
AgsI	TTSAA	2 cut(s)	25, 161
AjnI	CCWGG	2 cut(s)	117, 286
AluBI	AGCT	5 cut(s)	304, 339, 426, 661, 728
AluI	AGCT	5 cut(s)	304, 339, 426, 661, 728
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	2 cut(s)	223, 690
AlwI	GGATC	2 cut(s)	38, 57
AoxI	GGCC	4 cut(s)	110, 121, 274, 329
ApaI	GGGCCC	1 cut(s)	114
ApeKI	GCWGC	8 cut(s)	200, 203, 206, 227, 431, 545, 677, 680
Asp700I	GAANNNNTTC	1 cut(s)	20
AspS9I	GGNCC	3 cut(s)	110, 111, 121
AsuHPI	GGTGA	2 cut(s)	72, 186
AxyI	CCTNAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	114
BanII	GRGCYC	2 cut(s)	114, 341
BbsI	GAAGAC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	8 cut(s)	212, 214, 215, 218, 418, 532, 689, 692
BccI	CCATC	1 cut(s)	625
BciT130I	CCWGG	2 cut(s)	119, 288
BclI	TGATCA	2 cut(s)	352, 525
BcoDI	GTCTC	2 cut(s)	223, 690
BfaI	CTAG	4 cut(s)	384, 555, 561, 662
Bme1390I	CCNGG	2 cut(s)	119, 288
BmgT120I	GGNCC	3 cut(s)	110, 111, 121
BmiI	GGNNCC	2 cut(s)	112, 113
BmrFI	CCNGG	2 cut(s)	119, 288
BpiI	GAAGAC	1 cut(s)	517
BpmI	CTGGAG	2 cut(s)	237, 567
BpuEI	CTTGAG	1 cut(s)	635
BsaBI	GATNNNNATC	2 cut(s)	67, 357
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	118, 213
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 341, 458
Bse1I	ACTGG	1 cut(s)	584
Bse21I	CCTNAGG	1 cut(s)	326
Bse8I	GATNNNNATC	2 cut(s)	67, 357
BseBI	CCWGG	2 cut(s)	119, 288
BseDI	CCNNGG	2 cut(s)	118, 213
BseGI	GGATG	1 cut(s)	68
BseJI	GATNNNNATC	2 cut(s)	67, 357
BseLI	CCNNNNNNNGG	3 cut(s)	119, 341, 458
BseMII	CTCAG	2 cut(s)	306, 340
BseNI	ACTGG	1 cut(s)	584
BseRI	GAGGAG	2 cut(s)	77, 234
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	8 cut(s)	212, 214, 215, 218, 418, 532, 689, 692
BshFI	GGCC	4 cut(s)	112, 123, 276, 331
BsiHKAI	GWGCWC	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	342, 498
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	3 cut(s)	119, 341, 458
BsmAI	GTCTC	2 cut(s)	223, 690
BsmBI	CGTCTC	1 cut(s)	690
BsmFI	GGGAC	1 cut(s)	669
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	4 cut(s)	112, 123, 276, 331
Bso31I	GGTCTC	1 cut(s)	223
Bsp120I	GGGCCC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	114, 341
Bsp143I	GATC	7 cut(s)	43, 62, 352, 467, 505, 525, 551
BspACI	CCGC	4 cut(s)	210, 222, 225, 258
BspANI	GGCC	4 cut(s)	112, 123, 276, 331
BspCNI	CTCAG	2 cut(s)	305, 339
BspLI	GGNNCC	2 cut(s)	112, 113
BspPI	GGATC	2 cut(s)	38, 57
BspTNI	GGTCTC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	2 cut(s)	118, 213
BssMI	GATC	7 cut(s)	43, 62, 352, 467, 505, 525, 551
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	119, 288
Bst4CI	ACNGT	1 cut(s)	669
Bst6I	CTCTTC	2 cut(s)	273, 630
BstC8I	GCNNGC	2 cut(s)	232, 449
BstDEI	CTNAG	2 cut(s)	292, 326
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	7 cut(s)	46, 65, 355, 470, 508, 528, 554
BstMAI	GTCTC	2 cut(s)	223, 690
BstMBI	GATC	7 cut(s)	43, 62, 352, 467, 505, 525, 551
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 209, 257
BstNI	CCWGG	2 cut(s)	119, 288
BstSCI	CCNGG	2 cut(s)	117, 286
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	8 cut(s)	212, 214, 215, 218, 418, 532, 689, 692
BstV2I	GAAGAC	1 cut(s)	517
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
Bsu36I	CCTNAGG	1 cut(s)	326
BsuRI	GGCC	4 cut(s)	112, 123, 276, 331
BtsCI	GGATG	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	4 cut(s)	39, 394, 412, 474
Cac8I	GCNNGC	2 cut(s)	232, 449
Cfr13I	GGNCC	3 cut(s)	110, 111, 121
CseI	GACGC	1 cut(s)	672
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	1 cut(s)	188
DdeI	CTNAG	2 cut(s)	292, 326
DpnI	GATC	7 cut(s)	45, 64, 354, 469, 507, 527, 553
DpnII	GATC	7 cut(s)	43, 62, 352, 467, 505, 525, 551
Eam1104I	CTCTTC	2 cut(s)	273, 630
EarI	CTCTTC	2 cut(s)	273, 630
EciI	GGCGGA	1 cut(s)	211
Ecl136II	GAGCTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	114, 341
Eco31I	GGTCTC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	117, 286
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	2 cut(s)	114, 341
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	690
FaeI	CATG	1 cut(s)	191
FaiI	YATR	6 cut(s)	152, 189, 312, 372, 516, 524
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	1 cut(s)	187
FbaI	TGATCA	2 cut(s)	352, 525
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	2 cut(s)	114, 341
FspBI	CTAG	4 cut(s)	384, 555, 561, 662
GsuI	CTGGAG	2 cut(s)	237, 567
HaeIII	GGCC	4 cut(s)	112, 123, 276, 331
HapII	CCGG	2 cut(s)	342, 498
HgaI	GACGC	1 cut(s)	672
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	5 cut(s)	191, 320, 479, 539, 648
HpaII	CCGG	2 cut(s)	342, 498
HphI	GGTGA	2 cut(s)	72, 186
Hpy188I	TCNGA	6 cut(s)	62, 146, 295, 319, 336, 484
Hpy188III	TCNNGA	2 cut(s)	161, 529
HpyAV	CCTTC	3 cut(s)	167, 451, 462
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4V	TGCA	4 cut(s)	230, 623, 644, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 209, 257
HpyF3I	CTNAG	2 cut(s)	292, 326
Hsp92II	CATG	1 cut(s)	191
Ksp22I	TGATCA	2 cut(s)	352, 525
Kzo9I	GATC	7 cut(s)	43, 62, 352, 467, 505, 525, 551
LmnI	GCTCC	3 cut(s)	256, 344, 733
Lsp1109I	GCAGC	8 cut(s)	212, 214, 215, 218, 418, 532, 689, 692
MaeI	CTAG	4 cut(s)	384, 555, 561, 662
MalI	GATC	7 cut(s)	45, 64, 354, 469, 507, 527, 553
MboI	GATC	7 cut(s)	43, 62, 352, 467, 505, 525, 551
MboII	GAAGA	5 cut(s)	17, 260, 522, 647, 701
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	114, 341
MluCI	AATT	3 cut(s)	93, 493, 672
MlyI	GAGTC	3 cut(s)	185, 314, 642
MmeI	TCCRAC	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	3 cut(s)	96, 614, 671
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	2 cut(s)	342, 498
MspR9I	CCNGG	2 cut(s)	119, 288
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	2 cut(s)	119, 288
MwoI	GCNNNNNNNGC	3 cut(s)	206, 209, 257
NdeII	GATC	7 cut(s)	43, 62, 352, 467, 505, 525, 551
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	2 cut(s)	112, 113
NmeAIII	GCCGAG	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	331
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	479, 539
PleI	GAGTC	3 cut(s)	185, 314, 642
PpsI	GAGTC	3 cut(s)	185, 314, 642
Psp124BI	GAGCTC	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	117, 286
PspGI	CCWGG	2 cut(s)	117, 286
PspN4I	GGNNCC	2 cut(s)	112, 113
PspOMI	GGGCCC	1 cut(s)	110
PspPI	GGNCC	3 cut(s)	110, 111, 121
PsuI	RGATCY	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	341
SaqAI	TTAA	3 cut(s)	96, 614, 671
Sau3AI	GATC	7 cut(s)	43, 62, 352, 467, 505, 525, 551
Sau96I	GGNCC	3 cut(s)	110, 111, 121
SchI	GAGTC	3 cut(s)	185, 314, 642
ScrFI	CCNGG	2 cut(s)	119, 288
SduI	GDGCHC	2 cut(s)	114, 341
SetI	ASST	8 cut(s)	12, 80, 102, 306, 341, 428, 663, 730
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	3 cut(s)	93, 493, 672
SseBI	AGGCCT	1 cut(s)	331
SsiI	CCGC	4 cut(s)	210, 222, 225, 258
SspMI	CTAG	4 cut(s)	384, 555, 561, 662
SstI	GAGCTC	1 cut(s)	341
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	2 cut(s)	117, 286
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	669
TaqI	TCGA	3 cut(s)	508, 550, 715
TasI	AATT	3 cut(s)	93, 493, 672
TauI	GCSGC	3 cut(s)	212, 227, 260
TfiI	GAWTC	2 cut(s)	479, 539
Tru1I	TTAA	3 cut(s)	96, 614, 671
Tru9I	TTAA	3 cut(s)	96, 614, 671
TscAI	CASTG	4 cut(s)	46, 394, 412, 481
TseI	GCWGC	8 cut(s)	200, 203, 206, 227, 431, 545, 677, 680
TspDTI	ATGAA	2 cut(s)	337, 701
TspRI	CASTG	4 cut(s)	46, 394, 412, 481
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	4 cut(s)	384, 555, 561, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.