Rorug06G0321600
BZIP Family

regulation of photoperiodism, flowering

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000739
Physical Location & Seq
Forward (+)
47310429 .. 47310653
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0321600.1

Sequence Viewer

Length: 225 bp
ATGTCGAACCTAGACCGGTTATGCATGTTTCCGATCCAGTACCCGGAGGCGGAAGAAAAGCAGATCGAGGCGGAGGTAGAGGGGGACCGACTGACTGAGATTTTCCAGAAGCTGGCTGAGGCGGCGATTTTGGAGAGAGAGAGAGCCGGTTTTGTGGTAGAAGAAGGTGGACTTGATGTCGTGGAAGGAACGCTGAAAATTTCACCGGCGATGCAGAGTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

74

Amino Acids

8.33

Weight (kDa)

4.39

Isoelectric Point (pI)

62.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 112
AciI CCGC 3 cut(s) 50, 71, 122
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 198
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 43, 49, 112
AgeI ACCGGT 1 cut(s) 15
AhdI GACNNNNNGTC 1 cut(s) 176
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 112
ApoI RAATTY 1 cut(s) 198
AsiGI ACCGGT 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 85
BbvCI CCTCAGC 1 cut(s) 117
BcnI CCSGG 1 cut(s) 44
BfaI CTAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 85
BmeRI GACNNNNNGTC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 49, 112
Bse118I RCCGGY 3 cut(s) 15, 146, 205
Bse1I ACTGG 1 cut(s) 37
BseLI CCNNNNNNNGG 3 cut(s) 43, 49, 112
BseMII CTCAG 2 cut(s) 87, 108
BseNI ACTGG 1 cut(s) 37
BshTI ACCGGT 1 cut(s) 15
BsiSI CCGG 4 cut(s) 16, 44, 147, 206
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 3 cut(s) 43, 49, 112
BsmFI GGGAC 1 cut(s) 98
Bsp143I GATC 2 cut(s) 33, 63
BspACI CCGC 3 cut(s) 50, 71, 122
BspCNI CTCAG 2 cut(s) 88, 109
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 28
BsrFI RCCGGY 3 cut(s) 15, 146, 205
BsrI ACTGG 1 cut(s) 37
BssAI RCCGGY 3 cut(s) 15, 146, 205
BssMI GATC 2 cut(s) 33, 63
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 96, 117
BstKTI GATC 2 cut(s) 36, 66
BstMBI GATC 2 cut(s) 33, 63
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 114
CaiI CAGNNNCTG 1 cut(s) 112
Cfr10I RCCGGY 3 cut(s) 15, 146, 205
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 40
CspAI ACCGGT 1 cut(s) 15
CviAII CATG 1 cut(s) 25
CviJI RGCY 3 cut(s) 112, 116, 146
CviKI_1 RGCY 3 cut(s) 112, 116, 146
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 96, 117
DpnI GATC 2 cut(s) 35, 65
DpnII GATC 2 cut(s) 33, 63
DriI GACNNNNNGTC 1 cut(s) 176
Eam1105I GACNNNNNGTC 1 cut(s) 176
EciI GGCGGA 2 cut(s) 65, 86
Eco47I GGWCC 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 26
FaeI CATG 1 cut(s) 28
FaiI YATR 2 cut(s) 22, 26
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FaqI GGGAC 1 cut(s) 98
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 11
GluI GCNGC 1 cut(s) 123
HapII CCGG 4 cut(s) 16, 44, 147, 206
Hin1II CATG 1 cut(s) 28
HpaII CCGG 4 cut(s) 16, 44, 147, 206
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 158, 179
HpyCH4V TGCA 2 cut(s) 24, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 96, 117
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 2 cut(s) 33, 63
LpnPI CCDG 7 cut(s) 29, 50, 57, 98, 119, 160, 219
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 11
MalI GATC 2 cut(s) 35, 65
MboI GATC 2 cut(s) 33, 63
MboII GAAGA 2 cut(s) 65, 173
MluCI AATT 1 cut(s) 198
MnlI CCTC 5 cut(s) 40, 61, 67, 73, 112
Mph1103I ATGCAT 1 cut(s) 26
MspI CCGG 4 cut(s) 16, 44, 147, 206
MspR9I CCNGG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 44
NdeII GATC 2 cut(s) 33, 63
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 112
PinAI ACCGGT 1 cut(s) 15
PkrI GCNGC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 33, 63
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 44
SetI ASST 5 cut(s) 12, 78, 114, 169, 224
SfaNI GCATC 1 cut(s) 201
SgrAI CRCCGGYG 1 cut(s) 205
SinI GGWCC 1 cut(s) 85
Sse9I AATT 1 cut(s) 198
SsiI CCGC 3 cut(s) 50, 71, 122
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 42
TaqI TCGA 2 cut(s) 5, 66
TaqII GACCGA 1 cut(s) 102
TasI AATT 1 cut(s) 198
TauI GCSGC 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 28
XspI CTAG 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.