Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

453040 .. 454227

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015656

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCGGCTGTGAAGGCGGTGCGGCATGGTCTCAAGTCCGGCAGCGAGGTGGCTTTATCTGGGTGGCTCGTTGACGGTGGAAGGGATGAGAGCGAGCCTTTTGGCTGTTTCATGTTTCTACCCATGTCGTTCGACTCGGGTGGATTGGATCTGGTATTGGCTATGTTCGGCGGTGCTGTCCTGGTCACAGAGGATAGCGGCGATGTGGTGGCTGGTTTGGACGATTGGTTGGGTGTGATGGGATCTGTGTTGGTCGTAGCAGCGCCGGCGGTCTTGTTGCTGTCGGTGGAGATTCTGTGCAGGCTAGGACTCACTTTCCGGCAATTCGAACTCCAACCCAGACAAGTTGTTATCGGGGTCGAGTTTGCTAGTGTGAGTGGCACGACGGCGAGGGTGGTGTTCCAGCGAAGACTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

14.7

Weight (kDa)

4.7

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	5, 17, 22, 171, 198, 269
AclWI	GGATC	2 cut(s)	156, 250
AjnI	CCWGG	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	156, 250
Ama87I	CYCGRG	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	42, 260
AspLEI	GCGC	1 cut(s)	265
AsuII	TTCGAA	1 cut(s)	327
AvaI	CYCGRG	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	54, 272
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	305, 369
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	5 cut(s)	6, 23, 43, 199, 261
BlsI	GCNGC	5 cut(s)	7, 24, 44, 200, 262
Bme1390I	CCNGG	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bse118I	RCCGGY	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	54, 272
BsgI	GTGCAG	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	3 cut(s)	39, 266, 319
BsmAI	GTCTC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	136
Bsp119I	TTCGAA	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	148, 242
BspACI	CCGC	6 cut(s)	5, 17, 22, 171, 198, 269
BspPI	GGATC	2 cut(s)	156, 250
BspT104I	TTCGAA	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssMI	GATC	2 cut(s)	148, 242
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	95, 267, 302
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	151, 245
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	2 cut(s)	148, 242
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 266
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	54, 272
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	2 cut(s)	148, 242
BstYI	RGATCY	2 cut(s)	148, 242
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	91
Cac8I	GCNNGC	3 cut(s)	95, 267, 302
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	265
CviAII	CATG	3 cut(s)	26, 112, 124
CviJI	RGCY	8 cut(s)	8, 53, 67, 97, 105, 161, 212, 304
CviKI_1	RGCY	8 cut(s)	8, 53, 67, 97, 105, 161, 212, 304
DpnI	GATC	2 cut(s)	150, 244
DpnII	GATC	2 cut(s)	148, 242
Eco31I	GGTCTC	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	29, 115, 127
FaiI	YATR	4 cut(s)	27, 113, 125, 164
FatI	CATG	3 cut(s)	25, 111, 123
Fnu4HI	GCNGC	5 cut(s)	6, 23, 43, 199, 261
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	5 cut(s)	6, 23, 43, 199, 261
FspBI	CTAG	2 cut(s)	305, 369
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	5 cut(s)	6, 23, 43, 199, 261
HaeII	RGCGCY	1 cut(s)	266
HapII	CCGG	3 cut(s)	39, 266, 319
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	29, 115, 127
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	3 cut(s)	134, 292, 309
HpaII	CCGG	3 cut(s)	39, 266, 319
Hpy166II	GTNNAC	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	7, 75
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 266
Hsp92II	CATG	3 cut(s)	29, 115, 127
HspAI	GCGC	1 cut(s)	263
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	148, 242
Lsp1109I	GCAGC	2 cut(s)	54, 272
MaeI	CTAG	2 cut(s)	305, 369
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	2 cut(s)	150, 244
MboI	GATC	2 cut(s)	148, 242
MboII	GAAGA	1 cut(s)	420
MflI	RGATCY	2 cut(s)	148, 242
MluCI	AATT	2 cut(s)	323, 415
MlyI	GAGTC	2 cut(s)	128, 303
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	3 cut(s)	40, 184, 384
MreI	CGCCGGCG	1 cut(s)	265
MroNI	GCCGGC	1 cut(s)	265
MseI	TTAA	1 cut(s)	418
MspI	CCGG	3 cut(s)	39, 266, 319
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	14, 266
NaeI	GCCGGC	1 cut(s)	267
NdeII	GATC	2 cut(s)	148, 242
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	29, 115, 127
NmuCI	GTSAC	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	327
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	5 cut(s)	7, 24, 44, 200, 262
PleI	GAGTC	2 cut(s)	128, 303
PpsI	GAGTC	2 cut(s)	128, 303
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	148, 242
SaqAI	TTAA	1 cut(s)	418
SatI	GCNGC	5 cut(s)	6, 23, 43, 199, 261
Sau3AI	GATC	2 cut(s)	148, 242
SchI	GAGTC	2 cut(s)	128, 303
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	327
SgrAI	CRCCGGYG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	323, 415
SsiI	CCGC	6 cut(s)	5, 17, 22, 171, 198, 269
SspMI	CTAG	2 cut(s)	305, 369
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	3 cut(s)	132, 327, 360
TasI	AATT	2 cut(s)	323, 415
TauI	GCSGC	3 cut(s)	8, 25, 201
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	42, 260
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	100
XspI	CTAG	2 cut(s)	305, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.