RLG00000033969

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000739
Physical Location & Seq
Forward (+)
34820134 .. 34821212
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033969

Sequence Viewer

Length: 522 bp
ATGTCTCTCTCTCTGACTCTCTCACGAGAGAATGTCCACTTGAGGCTATCTAACCCGAGTGCCGGCGATAAACCTACGATCGGAAAGGTGGGATTTTCTCTTCTCTCTGATAGCTCTTCCGGGGACGGCGGTGGGCTTCGGCTTCTTCGAGTCGTTGAGTTTGCTGCATCTGGTCATCTTCTAGTGACCAGAGGCGCCTTTCCCTTATGGCCAGGGGGATTTCTCGGTGGTGGTGCTATGACAGCGGCTGCGAAGGCGGTGTGGCATGGTTACAAGTCTGGCAGTGAGGTGGCTTTTTCTGGGTGGCTCGTTGATGGTGGAAGGATTGAGAGCAAGCCGTTTGGCTATTTCATGTTTCTACCCACGACAATCGATCCGGGCGGATTGGATCTGGATTTGGTAGTGTTCGTCGATGTTGTCCGAGTTGCGGAGGATGGCGGCGATGTGGTGGCTGGTCTGGACGATTGGCTGGGAGTGATGGTCGCATTTGTATCAAATGCATATATTATTACAATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.05

Weight (kDa)

5.01

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AciI CCGC 6 cut(s) 129, 245, 257, 381, 428, 438
AclWI GGATC 2 cut(s) 368, 396
AcoI YGGCCR 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 195
AfiI CCNNNNNNNGG 3 cut(s) 62, 80, 427
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 368, 396
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 164, 248
AspLEI GCGC 1 cut(s) 197
AsuC2I CCSGG 2 cut(s) 121, 378
AvaI CYCGRG 1 cut(s) 55
BalI TGGCCA 1 cut(s) 211
BanI GGYRCC 1 cut(s) 194
BauI CACGAG 1 cut(s) 24
BbvI GCAGC 2 cut(s) 151, 235
BccI CCATC 3 cut(s) 308, 428, 472
BceAI ACGGC 2 cut(s) 142, 322
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 2 cut(s) 121, 378
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 198
BisI GCNGC 4 cut(s) 165, 246, 249, 439
BlsI GCNGC 4 cut(s) 166, 247, 250, 440
Bme1390I CCNGG 3 cut(s) 121, 213, 378
BmeT110I CYCGRG 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 3 cut(s) 121, 213, 378
BmsI GCATC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 61
BpuMI CCSGG 2 cut(s) 121, 378
Bsa29I ATCGAT 1 cut(s) 372
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 120, 212
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 80, 427
Bse118I RCCGGY 1 cut(s) 62
BseBI CCWGG 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 120, 212
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 3 cut(s) 62, 80, 427
BseXI GCAGC 2 cut(s) 151, 235
BseYI CCCAGC 1 cut(s) 469
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 211
BshNI GGYRCC 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 3 cut(s) 63, 120, 377
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 62, 80, 427
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 55
Bsp143I GATC 3 cut(s) 78, 373, 388
BspACI CCGC 6 cut(s) 129, 245, 257, 381, 428, 438
BspANI GGCC 1 cut(s) 211
BspDI ATCGAT 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 2 cut(s) 368, 396
BspQI GCTCTTC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 120, 212
BssMI GATC 3 cut(s) 78, 373, 388
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 213
Bst6I CTCTTC 2 cut(s) 105, 121
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 64, 335
BstF5I GGATG 1 cut(s) 439
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 3 cut(s) 81, 376, 391
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 78, 373, 388
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 242, 254
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 3 cut(s) 119, 211, 376
BstV1I GCAGC 2 cut(s) 151, 235
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 372
BsuRI GGCC 1 cut(s) 211
BsuTUI ATCGAT 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 1 cut(s) 439
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 64, 335
CaiI CAGNNNCTG 1 cut(s) 248
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 62
ClaI ATCGAT 1 cut(s) 372
CviAII CATG 2 cut(s) 266, 352
DinI GGCGCC 1 cut(s) 196
DpnI GATC 3 cut(s) 80, 375, 390
DpnII GATC 3 cut(s) 78, 373, 388
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 2 cut(s) 105, 121
EarI CTCTTC 2 cut(s) 105, 121
EciI GGCGGA 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 502
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
FaeI CATG 2 cut(s) 269, 355
FaiI YATR 6 cut(s) 208, 239, 267, 353, 502, 504
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 265, 351
Fnu4HI GCNGC 4 cut(s) 165, 246, 249, 439
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 4 cut(s) 165, 246, 249, 439
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 196
GluI GCNGC 4 cut(s) 165, 246, 249, 439
GsaI CCCAGC 1 cut(s) 473
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 1 cut(s) 211
HapII CCGG 3 cut(s) 63, 120, 377
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 269, 355
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HinfI GANTC 2 cut(s) 16, 150
HpaII CCGG 3 cut(s) 63, 120, 377
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 4 cut(s) 15, 83, 109, 422
Hpy188III TCNNGA 4 cut(s) 24, 392, 458, 519
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 2 cut(s) 247, 315
HpyCH4V TGCA 2 cut(s) 167, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 254
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 269, 355
HspAI GCGC 1 cut(s) 195
KasI GGCGCC 1 cut(s) 194
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Kzo9I GATC 3 cut(s) 78, 373, 388
LguI GCTCTTC 1 cut(s) 121
Lsp1109I GCAGC 2 cut(s) 151, 235
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 184, 269
MalI GATC 3 cut(s) 80, 375, 390
MboI GATC 3 cut(s) 78, 373, 388
MboII GAAGA 4 cut(s) 92, 108, 137, 170
MflI RGATCY 1 cut(s) 388
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 1 cut(s) 513
MluNI TGGCCA 1 cut(s) 211
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 2 cut(s) 10, 159
MnlI CCTC 4 cut(s) 36, 185, 280, 424
Mox20I TGGCCA 1 cut(s) 211
Mph1103I ATGCAT 1 cut(s) 502
MroNI GCCGGC 1 cut(s) 62
MscI TGGCCA 1 cut(s) 211
Msp20I TGGCCA 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 3 cut(s) 63, 120, 377
MspR9I CCNGG 3 cut(s) 121, 213, 378
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 242, 254
NaeI GCCGGC 1 cut(s) 64
NarI GGCGCC 1 cut(s) 195
NciI CCSGG 2 cut(s) 121, 378
NdeII GATC 3 cut(s) 78, 373, 388
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 2 cut(s) 269, 355
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 64
PkrI GCNGC 4 cut(s) 166, 247, 250, 440
Ple19I CGATCG 1 cut(s) 81
PleI GAGTC 2 cut(s) 10, 158
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 2 cut(s) 10, 158
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 248
PsuI RGATCY 1 cut(s) 388
PvuI CGATCG 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 121
SatI GCNGC 4 cut(s) 165, 246, 249, 439
Sau3AI GATC 3 cut(s) 78, 373, 388
SchI GAGTC 2 cut(s) 10, 159
ScrFI CCNGG 3 cut(s) 121, 213, 378
SetI ASST 4 cut(s) 76, 90, 116, 291
SfaNI GCATC 1 cut(s) 176
SfoI GGCGCC 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 1 cut(s) 513
SsiI CCGC 6 cut(s) 129, 245, 257, 381, 428, 438
SspDI GGCGCC 1 cut(s) 194
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 119, 211, 376
TaqI TCGA 3 cut(s) 148, 372, 411
TasI AATT 1 cut(s) 513
TauI GCSGC 2 cut(s) 248, 441
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 164, 248
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 340
TspRI CASTG 1 cut(s) 289
XspI CTAG 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.