Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Reverse (-)

61032266 .. 61033712

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCTCTCTCTCTGACTCTCTCACGAGAGAATGTCCGCTTGAGGCTATCTAACCCAAGTGCCGGCGGTAAACCTACGATCGGAAAGGTGGGATTTTCTCTTCTCTCTGATCGCTCTTCCGAGGACTGCTGTGGGCTTCGACTTCTTCGAGTCGTTGAGTTTGCTGCATCTGGTCATCTTCTGGTGATCGGAGGCGCCTTTCCCTTATGGCCGGGGGGATCTCTCGGTGGTGGTGCTATGATGGCGGCTGTGAAGGCGGTGCGGCATAGTTACAAGTCTGGCAGTGATGTGGCTTTTTCTGGGTGGCTTGTTGATGGTGGAAGGATTGAGAGCAAGCCGTTTAGCTATTTCATGTTTCTACCCATGTCGGTAGATCCAGGTGGATTGGATCTGATTGGACCTATGGCCGATCCCTTTGTAAACTGGTGGTTTTGCTCTGCATTCTGTGTGGAGCAAGTTACTGGTTCGATTGGATTGGCATCACCACCATCACCAAACCATCCATATTGGCTATTGCTTCCTACTATCCTCTGTACTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.12

Weight (kDa)

7.65

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AciI	CCGC	5 cut(s)	37, 66, 245, 257, 262
AclWI	GGATC	4 cut(s)	226, 368, 396, 404
AcoI	YGGCCR	2 cut(s)	209, 405
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	2 cut(s)	62, 80
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	4 cut(s)	226, 368, 396, 404
AoxI	GGCC	2 cut(s)	209, 405
ApeKI	GCWGC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	3 cut(s)	196, 474, 483
AvaII	GGWCC	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	4 cut(s)	235, 308, 496, 507
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	3 cut(s)	165, 246, 263
BlsI	GCNGC	3 cut(s)	166, 247, 264
Bme1390I	CCNGG	2 cut(s)	213, 378
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	2 cut(s)	213, 378
BmsI	GCATC	2 cut(s)	176, 488
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	478
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	120, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 80
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	428, 466
Bse8I	GATNNNNATC	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	120, 212
BseGI	GGATG	1 cut(s)	499
BseJI	GATNNNNATC	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	62, 80
BseNI	ACTGG	2 cut(s)	428, 466
BseXI	GCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	211, 407
BshNI	GGYRCC	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	63, 212
BslI	CCNNNNNNNGG	2 cut(s)	62, 80
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	211, 407
Bsp143I	GATC	7 cut(s)	78, 109, 186, 218, 373, 388, 409
BspACI	CCGC	5 cut(s)	37, 66, 245, 257, 262
BspANI	GGCC	2 cut(s)	211, 407
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	4 cut(s)	226, 368, 396, 404
BspQI	GCTCTTC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	428, 466
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	120, 212
BssMI	GATC	7 cut(s)	78, 109, 186, 218, 373, 388, 409
BssNI	GRCGYC	1 cut(s)	195
BssSI	CACGAG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	378
Bst6I	CTCTTC	2 cut(s)	105, 121
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	64, 335
BstF5I	GGATG	1 cut(s)	499
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	7 cut(s)	81, 112, 189, 221, 376, 391, 412
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	7 cut(s)	78, 109, 186, 218, 373, 388, 409
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 254
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	211, 376
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	3 cut(s)	218, 373, 388
BstYI	RGATCY	3 cut(s)	218, 373, 388
BsuRI	GGCC	2 cut(s)	211, 407
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	64, 335
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	2 cut(s)	352, 364
CviQI	GTAC	1 cut(s)	534
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	7 cut(s)	80, 111, 188, 220, 375, 390, 411
DpnII	GATC	7 cut(s)	78, 109, 186, 218, 373, 388, 409
EaeI	YGGCCR	2 cut(s)	209, 405
Eam1104I	CTCTTC	2 cut(s)	105, 121
EarI	CTCTTC	2 cut(s)	105, 121
Eco47I	GGWCC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	376
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
FaeI	CATG	2 cut(s)	355, 367
FaiI	YATR	7 cut(s)	208, 239, 267, 353, 365, 404, 505
FatI	CATG	2 cut(s)	351, 363
Fnu4HI	GCNGC	3 cut(s)	165, 246, 263
FokI	GGATG	1 cut(s)	486
Fsp4HI	GCNGC	3 cut(s)	165, 246, 263
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	3 cut(s)	165, 246, 263
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	211, 407
HapII	CCGG	2 cut(s)	63, 212
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	355, 367
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	16, 150
HpaII	CCGG	2 cut(s)	63, 212
HphI	GGTGA	3 cut(s)	196, 474, 483
Hpy166II	GTNNAC	2 cut(s)	71, 421
Hpy188I	TCNGA	6 cut(s)	15, 83, 109, 121, 191, 393
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	2 cut(s)	71, 421
HpyAV	CCTTC	2 cut(s)	247, 315
HpyCH4V	TGCA	2 cut(s)	167, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 254
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	355, 367
HspAI	GCGC	1 cut(s)	195
KasI	GGCGCC	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Kzo9I	GATC	7 cut(s)	78, 109, 186, 218, 373, 388, 409
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	2 cut(s)	176, 488
MaeIII	GTNAC	2 cut(s)	269, 457
MalI	GATC	7 cut(s)	80, 111, 188, 220, 375, 390, 411
MboI	GATC	7 cut(s)	78, 109, 186, 218, 373, 388, 409
MboII	GAAGA	4 cut(s)	92, 108, 137, 170
MflI	RGATCY	3 cut(s)	218, 373, 388
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	10, 159
MnlI	CCTC	4 cut(s)	36, 115, 185, 539
MroNI	GCCGGC	1 cut(s)	62
MseI	TTAA	1 cut(s)	541
MspI	CCGG	2 cut(s)	63, 212
MspR9I	CCNGG	2 cut(s)	213, 378
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	242, 254
NaeI	GCCGGC	1 cut(s)	64
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	7 cut(s)	78, 109, 186, 218, 373, 388, 409
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	2 cut(s)	355, 367
NlaIV	GGNNCC	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PctI	GAATGC	1 cut(s)	440
PdiI	GCCGGC	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	166, 247, 264
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	2 cut(s)	10, 158
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	2 cut(s)	10, 158
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	398
PsuI	RGATCY	3 cut(s)	218, 373, 388
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	541
SatI	GCNGC	3 cut(s)	165, 246, 263
Sau3AI	GATC	7 cut(s)	78, 109, 186, 218, 373, 388, 409
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	10, 159
ScrFI	CCNGG	2 cut(s)	213, 378
SetI	ASST	5 cut(s)	76, 90, 347, 382, 403
SfaNI	GCATC	2 cut(s)	176, 488
SfoI	GGCGCC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SsiI	CCGC	5 cut(s)	37, 66, 245, 257, 262
SspDI	GGCGCC	1 cut(s)	194
StyD4I	CCNGG	2 cut(s)	211, 376
TaqI	TCGA	3 cut(s)	139, 148, 467
TatI	WGTACW	1 cut(s)	533
TauI	GCSGC	2 cut(s)	248, 265
Tru1I	TTAA	1 cut(s)	541
Tru9I	TTAA	1 cut(s)	541
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	340
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.