Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Reverse (-)

61340489 .. 61341812

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG434700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACGATGGAGGATGTGTGGAAAGACATAAGCCTAGCTTCTCTTTGTGACCACAACTCACCGGCGGCTGCTGCCGGCAGCTCCGCCTCACGTAACGACTCTGCAGCTATTCGTGGCTTCATTTTTCAGGATTTCATGGCGGCGGCGTCCACCAAACTCACTCCTTCTTCTCTTGCTACTGATCTAGCGCCACTGCCACAGCCACCGGCCACTCTCCTCAGCTTGAGTTCTTCCGGTTCCGATCATTTTCAACAGTACCAAGTTCAAAGCGCTACTGCTACTGCTAGTACCAACACTACTGCTCCACCAATACCAGTGACGCCAAACGCGCAAAGACTGCACCGTATTAGTACTATTCCTTCATCTTCTGTGATCTCTTTCTCCTATAAGCACGCGAATAACTCGTCGGAGGCTTTGGATTCTTCCCCGTCTTGCAAGAAAAGGGCGTTAGAAGAAAATGGAGAGAACTCTAGGCATATCCGGCATAAGCGGATGATCAAGAACAGAGAATCGGCCTCTCGCTCCCGAGCACGAAAGCAAGCTTATACAAGTGAGCTGGAACTTGAACTAGCACATTTGCGGGAGGAGAATGCCAGACTTAAAAGACAGCAAGAAAAGGTAGTTGGGGGTTACTTGATTATTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

215

Amino Acids

23.48

Weight (kDa)

9.36

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	160 - 206	3.9e-09	Basic region leucine zipper
bZIP_1	PF00170	161 - 205	5e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	329, 395
AciI	CCGC	6 cut(s)	65, 84, 140, 143, 490, 580
AcoI	YGGCCR	1 cut(s)	207
AcyI	GRCGYC	2 cut(s)	146, 320
AfaI	GTAC	3 cut(s)	257, 289, 352
AfeI	AGCGCT	1 cut(s)	271
AgsI	TTSAA	3 cut(s)	251, 266, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AluBI	AGCT	6 cut(s)	38, 81, 107, 222, 542, 556
AluI	AGCT	6 cut(s)	38, 81, 107, 222, 542, 556
Alw21I	GWGCWC	1 cut(s)	532
Ama87I	CYCGRG	1 cut(s)	525
Aor51HI	AGCGCT	1 cut(s)	271
AoxI	GGCC	2 cut(s)	207, 513
ApeKI	GCWGC	4 cut(s)	68, 71, 78, 104
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspLEI	GCGC	3 cut(s)	190, 272, 331
AsuHPI	GGTGA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	525
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
Bbv12I	GWGCWC	1 cut(s)	532
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	4 cut(s)	55, 58, 90, 116
BclI	TGATCA	1 cut(s)	495
BfaI	CTAG	5 cut(s)	35, 185, 285, 471, 569
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	2 cut(s)	191, 273
BisI	GCNGC	7 cut(s)	66, 69, 72, 79, 105, 141, 144
BlsI	GCNGC	7 cut(s)	67, 70, 73, 80, 106, 142, 145
BmcAI	AGTACT	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	525
BmiI	GGNNCC	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	92
BsaHI	GRCGYC	2 cut(s)	146, 320
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 286, 316
Bse118I	RCCGGY	3 cut(s)	61, 74, 205
Bse1I	ACTGG	1 cut(s)	314
BseGI	GGATG	2 cut(s)	19, 498
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	206, 599
BseXI	GCAGC	4 cut(s)	55, 58, 90, 116
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	2 cut(s)	329, 395
BshFI	GGCC	2 cut(s)	209, 515
BsiHKAI	GWGCWC	1 cut(s)	532
BsiHKCI	CYCGRG	1 cut(s)	525
BsiSI	CCGG	5 cut(s)	62, 75, 206, 234, 481
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	209, 515
BsoBI	CYCGRG	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	181, 241, 372, 495
BspACI	CCGC	6 cut(s)	65, 84, 140, 143, 490, 580
BspANI	GGCC	2 cut(s)	209, 515
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	2 cut(s)	329, 395
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	106
BsrFI	RCCGGY	3 cut(s)	61, 74, 205
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	3 cut(s)	61, 74, 205
BssMI	GATC	4 cut(s)	181, 241, 372, 495
BssNI	GRCGYC	2 cut(s)	146, 320
Bst4CI	ACNGT	2 cut(s)	255, 344
BstACI	GRCGYC	2 cut(s)	146, 320
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	76, 393, 540
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	19, 498
BstFNI	CGCG	2 cut(s)	329, 395
BstH2I	RGCGCY	2 cut(s)	191, 273
BstHHI	GCGC	3 cut(s)	190, 272, 331
BstKTI	GATC	4 cut(s)	184, 244, 375, 498
BstMBI	GATC	4 cut(s)	181, 241, 372, 495
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 328, 337, 481
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	2 cut(s)	329, 395
BstV1I	GCAGC	4 cut(s)	55, 58, 90, 116
BsuRI	GGCC	2 cut(s)	209, 515
BtsCI	GGATG	2 cut(s)	19, 498
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	191, 321
Cac8I	GCNNGC	3 cut(s)	76, 393, 540
CfoI	GCGC	3 cut(s)	190, 272, 331
Cfr10I	RCCGGY	3 cut(s)	61, 74, 205
CseI	GACGC	2 cut(s)	135, 328
Csp6I	GTAC	3 cut(s)	256, 288, 351
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	3 cut(s)	256, 288, 351
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	4 cut(s)	183, 243, 374, 497
DpnII	GATC	4 cut(s)	181, 241, 372, 495
EaeI	YGGCCR	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	73
Eco47III	AGCGCT	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	525
FaeI	CATG	1 cut(s)	139
FaiI	YATR	6 cut(s)	29, 137, 387, 477, 486, 546
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FatI	CATG	1 cut(s)	135
FauI	CCCGC	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	7 cut(s)	66, 69, 72, 79, 105, 141, 144
FokI	GGATG	2 cut(s)	26, 505
Fsp4HI	GCNGC	7 cut(s)	66, 69, 72, 79, 105, 141, 144
FspBI	CTAG	5 cut(s)	35, 185, 285, 471, 569
GlaI	GCGC	3 cut(s)	189, 271, 330
GluI	GCNGC	7 cut(s)	66, 69, 72, 79, 105, 141, 144
HaeII	RGCGCY	2 cut(s)	191, 273
HaeIII	GGCC	2 cut(s)	209, 515
HapII	CCGG	5 cut(s)	62, 75, 206, 234, 481
HgaI	GACGC	2 cut(s)	135, 328
HhaI	GCGC	3 cut(s)	190, 272, 331
Hin1I	GRCGYC	2 cut(s)	146, 320
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	3 cut(s)	188, 270, 329
HinP1I	GCGC	3 cut(s)	188, 270, 329
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	3 cut(s)	98, 419, 509
HpaII	CCGG	5 cut(s)	62, 75, 206, 234, 481
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	241, 409
Hpy188III	TCNNGA	3 cut(s)	128, 499, 525
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	2 cut(s)	174, 369
HpyCH4III	ACNGT	2 cut(s)	255, 344
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	104, 340, 435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 328, 337, 481
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	2 cut(s)	146, 320
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	3 cut(s)	188, 270, 329
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	181, 241, 372, 495
LmnI	GCTCC	3 cut(s)	86, 307, 527
LpnPI	CCDG	9 cut(s)	75, 88, 113, 219, 247, 327, 494, 542, 607
Lsp1109I	GCAGC	4 cut(s)	55, 58, 90, 116
MaeI	CTAG	5 cut(s)	35, 185, 285, 471, 569
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	4 cut(s)	47, 92, 316, 629
MalI	GATC	4 cut(s)	183, 243, 374, 497
MboI	GATC	4 cut(s)	181, 241, 372, 495
MboII	GAAGA	5 cut(s)	159, 222, 357, 414, 464
MhlI	GDGCHC	1 cut(s)	532
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	6 cut(s)	4, 97, 227, 403, 526, 577
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	600
MspI	CCGG	5 cut(s)	62, 75, 206, 234, 481
Mva1269I	GAATGC	1 cut(s)	595
MvnI	CGCG	2 cut(s)	329, 395
MwoI	GCNNNNNNNGC	4 cut(s)	71, 328, 337, 481
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	4 cut(s)	181, 241, 372, 495
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	47, 316
PctI	GAATGC	1 cut(s)	595
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	419, 509
PkrI	GCNGC	7 cut(s)	67, 70, 73, 80, 106, 142, 145
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	106
RsaI	GTAC	3 cut(s)	257, 289, 352
RsaNI	GTAC	3 cut(s)	256, 288, 351
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	7 cut(s)	66, 69, 72, 79, 105, 141, 144
Sau3AI	GATC	4 cut(s)	181, 241, 372, 495
ScaI	AGTACT	1 cut(s)	352
SchI	GAGTC	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	8 cut(s)	40, 83, 94, 109, 224, 544, 558, 621
SfcI	CTRYAG	1 cut(s)	102
SgrAI	CRCCGGYG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SsiI	CCGC	6 cut(s)	65, 84, 140, 143, 490, 580
SspMI	CTAG	5 cut(s)	35, 185, 285, 471, 569
TaaI	ACNGT	2 cut(s)	255, 344
TaiI	ACGT	1 cut(s)	94
TatI	WGTACW	1 cut(s)	350
TauI	GCSGC	3 cut(s)	68, 143, 146
TfiI	GAWTC	2 cut(s)	419, 509
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	2 cut(s)	198, 321
TseFI	GTSAC	2 cut(s)	47, 316
TseI	GCWGC	4 cut(s)	68, 71, 78, 104
Tsp45I	GTSAC	2 cut(s)	47, 316
TspDTI	ATGAA	3 cut(s)	109, 124, 351
TspRI	CASTG	2 cut(s)	198, 321
XspI	CTAG	5 cut(s)	35, 185, 285, 471, 569
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.