Rroxscaffold_2G00143780
BZIP Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000739
Physical Location & Seq
Forward (+)
81751069 .. 81751931
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143780.1

Sequence Viewer

Length: 567 bp
ATGGAGGAGGTGTGGAAGGACATCAACCTCGCCTCGCTTTCGGACTCCAACAACTCACTCAACAACAATCCCAACTTCAGAAACATGACCCTCCAGGACTTTCTGGCAAGGCCCTTTGGCAATGTGGTCTCTCCCAGACCCATTCACCACCACCATCACCACACCACTGGCAACTCTCCTCCTCCTCCTCAAGCTTTGATGCCGAGCCCAGCCACTGTTCTGAGCTTGAATCATTTGAGCTCGGACCAGTTTCAGCACTTCTGTTTTGAGAATCTCAACACTAGGCCTGTTGTTAACATCAACCACCCCAATAGTAGTACTGTTTCTGATAACTCTTTCAGTGGTGCTTACCCATTTGAGGGTTTCGGAAACCAATCTTCTCCTTCTTCTGGGTTGGTTATGCCTTCGGGTTTTGGGGCTTACACGAATGAGCTGGAGCTTGAGGTTCAGCATTTGATGGAAGAGAATGCGAGGCTGAGAAGACAGCAAGAACAGTCAGGTAATGCAGCAGCTTCTCAACTACCCAAAAAGCACTGTCTGAATCGATCATCAACAGCACCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

188

Amino Acids

20.81

Weight (kDa)

6.23

Isoelectric Point (pI)

66.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 3 cut(s) 358, 359, 389
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 6 cut(s) 194, 225, 240, 433, 439, 512
AluI AGCT 6 cut(s) 194, 225, 240, 433, 439, 512
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 133
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 2 cut(s) 110, 284
ApeKI GCWGC 2 cut(s) 506, 509
AspS9I GGNCC 2 cut(s) 111, 244
AsuHPI GGTGA 2 cut(s) 137, 149
AvaII GGWCC 1 cut(s) 244
BanII GRGCYC 2 cut(s) 209, 242
BbsI GAAGAC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 518, 521
BccI CCATC 2 cut(s) 162, 451
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 282
BisI GCNGC 2 cut(s) 507, 510
BlsI GCNGC 2 cut(s) 508, 511
BmcAI AGTACT 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 111, 244
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 487
BpmI CTGGAG 2 cut(s) 77, 455
BpuEI CTTGAG 2 cut(s) 174, 461
Bsa29I ATCGAT 1 cut(s) 544
BsaI GGTCTC 1 cut(s) 133
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 358, 359, 389
Bse1I ACTGG 2 cut(s) 172, 247
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 95
BseCI ATCGAT 1 cut(s) 544
BseLI CCNNNNNNNGG 3 cut(s) 358, 359, 389
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 212, 467
BseNI ACTGG 2 cut(s) 172, 247
BseRI GAGGAG 5 cut(s) 20, 168, 171, 174, 177
BseXI GCAGC 2 cut(s) 518, 521
BseYI CCCAGC 1 cut(s) 208
BshFI GGCC 2 cut(s) 112, 286
BshVI ATCGAT 1 cut(s) 544
BsiHKAI GWGCWC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 358, 359, 389
BsmAI GTCTC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 2 cut(s) 112, 286
Bso31I GGTCTC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 209, 242
Bsp143I GATC 1 cut(s) 545
BspANI GGCC 2 cut(s) 112, 286
BspCNI CTCAG 2 cut(s) 213, 468
BspDI ATCGAT 1 cut(s) 544
BspTNI GGTCTC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 2 cut(s) 172, 247
BssMI GATC 1 cut(s) 545
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 4 cut(s) 217, 322, 495, 536
Bst6I CTCTTC 1 cut(s) 456
BstDEI CTNAG 2 cut(s) 221, 476
BstKTI GATC 1 cut(s) 548
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 545
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 518, 521
BstV2I GAAGAC 1 cut(s) 487
BstXI CCANNNNNNTGG 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 544
BsuRI GGCC 2 cut(s) 112, 286
BsuTUI ATCGAT 1 cut(s) 544
BtsIMutI CAGTG 4 cut(s) 165, 213, 346, 532
CaiI CAGNNNCTG 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 111, 244
ClaI ATCGAT 1 cut(s) 544
Csp6I GTAC 1 cut(s) 318
CviAII CATG 1 cut(s) 85
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 2 cut(s) 221, 476
DpnI GATC 1 cut(s) 547
DpnII GATC 1 cut(s) 545
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 240
Eco147I AGGCCT 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 209, 242
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 93
EcoT38I GRGCYC 2 cut(s) 209, 242
FaeI CATG 1 cut(s) 88
FaiI YATR 2 cut(s) 86, 401
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 507, 510
FriOI GRGCYC 2 cut(s) 209, 242
Fsp4HI GCNGC 2 cut(s) 507, 510
FspBI CTAG 1 cut(s) 282
GluI GCNGC 2 cut(s) 507, 510
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 2 cut(s) 77, 455
HaeIII GGCC 2 cut(s) 112, 286
Hin1II CATG 1 cut(s) 88
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 4 cut(s) 44, 229, 271, 541
HpaI GTTAAC 1 cut(s) 295
HphI GGTGA 2 cut(s) 137, 149
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 7 cut(s) 43, 80, 222, 244, 328, 368, 540
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 10, 393, 414
HpyCH4III ACNGT 4 cut(s) 217, 322, 495, 536
HpyCH4V TGCA 1 cut(s) 506
HpyF3I CTNAG 2 cut(s) 221, 476
Hsp92II CATG 1 cut(s) 88
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 545
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 2 cut(s) 518, 521
LweI GCATC 1 cut(s) 189
MaeI CTAG 1 cut(s) 282
MalI GATC 1 cut(s) 547
MboI GATC 1 cut(s) 545
MboII GAAGA 4 cut(s) 369, 378, 473, 492
MhlI GDGCHC 2 cut(s) 209, 242
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 472
MvaI CCWGG 1 cut(s) 95
NdeII GATC 1 cut(s) 545
NlaIII CATG 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 228
PceI AGGCCT 1 cut(s) 286
PctI GAATGC 1 cut(s) 472
PfeI GAWTC 3 cut(s) 229, 271, 541
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 2 cut(s) 508, 511
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 93
PspPI GGNCC 2 cut(s) 111, 244
PstNI CAGNNNCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SacI GAGCTC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 507, 510
Sau3AI GATC 1 cut(s) 545
Sau96I GGNCC 2 cut(s) 111, 244
ScaI AGTACT 1 cut(s) 319
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 209, 242
SfaNI GCATC 1 cut(s) 189
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 2 cut(s) 189, 440
SmoI CTYRAG 2 cut(s) 189, 440
SseBI AGGCCT 1 cut(s) 286
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 242
StuI AGGCCT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 4 cut(s) 217, 322, 495, 536
TaqI TCGA 1 cut(s) 544
TatI WGTACW 1 cut(s) 317
TfiI GAWTC 3 cut(s) 229, 271, 541
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 4 cut(s) 172, 220, 346, 539
TseI GCWGC 2 cut(s) 506, 509
TspRI CASTG 4 cut(s) 172, 220, 346, 539
VpaK11BI GGWCC 1 cut(s) 244
XspI CTAG 1 cut(s) 282
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.