Rw6G037740
BZIP Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000739
Physical Location & Seq
Reverse (-)
62026124 .. 62027479
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037740.1

Sequence Viewer

Length: 612 bp
ATGACGATGGAGGATGTGTGGAAAGACATAAGTCTAGCTTCTCTTTGTGACCACAACTCACCGGCGGCTGCTGCCGGCAGCTCCGCCTCACGTAACGACTCTGAAGCTATTCGTGGCTTCATTTTTCAAGATTTCATGGCGGCGGCGTCCACCAAACTCACTCCTTCTCTTGCTACTGATCTGGCGCCACTGCCACAGCCACAGCCACCGGCCACTCTCCTCAGCTTGAGTTCTTCCGGTTCCGATCATTTTCAACAGTACCAAGTTCAAAGCGCTACTGCTACTGCTAGTACCAACACTACTGCTCCACCAAGACCAGTGACGCCAAACGCGCAAAGACTGCACCGTATTAGTACTATTCCTTCATCTTCTGTGATCTCTTTCTCCAATAAGCACGCGAATAACTTGTCGGAGGCTTTGGATTCTTCCCCGTCTTGCAAGAAAAGGGCGTTAGAAGAAAATGGAGAGAACTCTAGGCATGTCCGGCATAAGCGGATGATCAAGAACAGAGAATCGGCCTCTCGCTCCCGAGCACGAAAGCAAGTACGTACTTTCTGGCTAAGAGTCTCCAGTTTGGTTCATACTAACCGATTTATTACTTTTTCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

203

Amino Acids

22.15

Weight (kDa)

10.26

Isoelectric Point (pI)

62.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 162 - 185 6.8e-06 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AccII CGCG 2 cut(s) 332, 398
AciI CCGC 5 cut(s) 65, 84, 140, 143, 493
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 3 cut(s) 146, 185, 323
AfaI GTAC 5 cut(s) 260, 292, 355, 546, 550
AfeI AGCGCT 1 cut(s) 274
AgsI TTSAA 3 cut(s) 128, 254, 269
AluBI AGCT 4 cut(s) 38, 81, 107, 225
AluI AGCT 4 cut(s) 38, 81, 107, 225
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 571
Ama87I CYCGRG 1 cut(s) 528
Aor51HI AGCGCT 1 cut(s) 274
AoxI GGCC 2 cut(s) 210, 516
ApeKI GCWGC 3 cut(s) 68, 71, 78
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 3 cut(s) 187, 275, 334
AsuHPI GGTGA 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 528
BanI GGYRCC 1 cut(s) 184
BarI GAAGNNNNNNTAC 2 cut(s) 346, 378
Bbv12I GWGCWC 1 cut(s) 535
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 3 cut(s) 55, 58, 90
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 3 cut(s) 35, 288, 474
BfoI RGCGCY 2 cut(s) 188, 276
BisI GCNGC 6 cut(s) 66, 69, 72, 79, 141, 144
BlsI GCNGC 6 cut(s) 67, 70, 73, 80, 142, 145
BmcAI AGTACT 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 528
BmiI GGNNCC 2 cut(s) 186, 241
BoxI GACNNNNGTC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 553
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 247
BsaAI YACGTR 2 cut(s) 92, 548
BsaHI GRCGYC 3 cut(s) 146, 185, 323
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 3 cut(s) 32, 289, 319
Bse118I RCCGGY 3 cut(s) 61, 74, 208
Bse1I ACTGG 2 cut(s) 317, 570
BseGI GGATG 2 cut(s) 19, 501
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 2 cut(s) 317, 570
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 3 cut(s) 55, 58, 90
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 2 cut(s) 332, 398
BshFI GGCC 2 cut(s) 212, 518
BshNI GGYRCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 5 cut(s) 62, 75, 209, 237, 484
BsmAI GTCTC 1 cut(s) 571
BsnI GGCC 2 cut(s) 212, 518
BsoBI CYCGRG 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 4 cut(s) 178, 244, 375, 498
BspACI CCGC 5 cut(s) 65, 84, 140, 143, 493
BspANI GGCC 2 cut(s) 212, 518
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 2 cut(s) 332, 398
BspLI GGNNCC 2 cut(s) 186, 241
BspT107I GGYRCC 1 cut(s) 184
BsrFI RCCGGY 3 cut(s) 61, 74, 208
BsrI ACTGG 2 cut(s) 317, 570
BssAI RCCGGY 3 cut(s) 61, 74, 208
BssMI GATC 4 cut(s) 178, 244, 375, 498
BssNI GRCGYC 3 cut(s) 146, 185, 323
Bst4CI ACNGT 2 cut(s) 258, 347
BstACI GRCGYC 3 cut(s) 146, 185, 323
BstAPI GCANNNNNTGC 1 cut(s) 340
BstBAI YACGTR 2 cut(s) 92, 548
BstC8I GCNNGC 2 cut(s) 76, 396
BstDEI CTNAG 2 cut(s) 221, 560
BstF5I GGATG 2 cut(s) 19, 501
BstFNI CGCG 2 cut(s) 332, 398
BstH2I RGCGCY 2 cut(s) 188, 276
BstHHI GCGC 3 cut(s) 187, 275, 334
BstKTI GATC 4 cut(s) 181, 247, 378, 501
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 4 cut(s) 178, 244, 375, 498
BstMWI GCNNNNNNNGC 4 cut(s) 71, 331, 340, 484
BstNSI RCATGY 1 cut(s) 482
BstPAI GACNNNNGTC 1 cut(s) 30
BstSNI TACGTA 1 cut(s) 548
BstUI CGCG 2 cut(s) 332, 398
BstV1I GCAGC 3 cut(s) 55, 58, 90
BsuRI GGCC 2 cut(s) 212, 518
BtsCI GGATG 2 cut(s) 19, 501
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 2 cut(s) 188, 324
Cac8I GCNNGC 2 cut(s) 76, 396
CfoI GCGC 3 cut(s) 187, 275, 334
Cfr10I RCCGGY 3 cut(s) 61, 74, 208
CseI GACGC 2 cut(s) 135, 331
Csp6I GTAC 5 cut(s) 259, 291, 354, 545, 549
CviAII CATG 2 cut(s) 136, 479
CviQI GTAC 5 cut(s) 259, 291, 354, 545, 549
DdeI CTNAG 2 cut(s) 221, 560
DinI GGCGCC 1 cut(s) 186
DpnI GATC 4 cut(s) 180, 246, 377, 500
DpnII GATC 4 cut(s) 178, 244, 375, 498
EaeI YGGCCR 1 cut(s) 210
EciI GGCGGA 1 cut(s) 73
Eco105I TACGTA 1 cut(s) 548
Eco47III AGCGCT 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 528
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
FaeI CATG 2 cut(s) 139, 482
FaiI YATR 5 cut(s) 29, 137, 480, 489, 582
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 2 cut(s) 135, 478
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 6 cut(s) 66, 69, 72, 79, 141, 144
FokI GGATG 2 cut(s) 26, 508
Fsp4HI GCNGC 6 cut(s) 66, 69, 72, 79, 141, 144
FspBI CTAG 3 cut(s) 35, 288, 474
GlaI GCGC 3 cut(s) 186, 274, 333
GluI GCNGC 6 cut(s) 66, 69, 72, 79, 141, 144
GsuI CTGGAG 1 cut(s) 553
HaeII RGCGCY 2 cut(s) 188, 276
HaeIII GGCC 2 cut(s) 212, 518
HapII CCGG 5 cut(s) 62, 75, 209, 237, 484
HgaI GACGC 2 cut(s) 135, 331
HhaI GCGC 3 cut(s) 187, 275, 334
Hin1I GRCGYC 3 cut(s) 146, 185, 323
Hin1II CATG 2 cut(s) 139, 482
Hin6I GCGC 3 cut(s) 185, 273, 332
HinP1I GCGC 3 cut(s) 185, 273, 332
HinfI GANTC 4 cut(s) 98, 422, 512, 564
HpaII CCGG 5 cut(s) 62, 75, 209, 237, 484
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 3 cut(s) 103, 244, 412
Hpy188III TCNNGA 3 cut(s) 128, 502, 528
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 2 cut(s) 174, 372
HpyCH4III ACNGT 2 cut(s) 258, 347
HpyCH4IV ACGT 2 cut(s) 91, 547
HpyCH4V TGCA 2 cut(s) 343, 438
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 331, 340, 484
HpyF3I CTNAG 2 cut(s) 221, 560
HpySE526I ACGT 2 cut(s) 91, 547
Hsp92I GRCGYC 3 cut(s) 146, 185, 323
Hsp92II CATG 2 cut(s) 139, 482
HspAI GCGC 3 cut(s) 185, 273, 332
KasI GGCGCC 1 cut(s) 184
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 4 cut(s) 178, 244, 375, 498
LmnI GCTCC 3 cut(s) 86, 310, 530
Lsp1109I GCAGC 3 cut(s) 55, 58, 90
MaeI CTAG 3 cut(s) 35, 288, 474
MaeII ACGT 2 cut(s) 91, 547
MaeIII GTNAC 3 cut(s) 47, 92, 319
MalI GATC 4 cut(s) 180, 246, 377, 500
MboI GATC 4 cut(s) 178, 244, 375, 498
MboII GAAGA 4 cut(s) 225, 360, 417, 467
MhlI GDGCHC 1 cut(s) 535
Mly113I GGCGCC 1 cut(s) 185
MlyI GAGTC 2 cut(s) 92, 573
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 5 cut(s) 4, 97, 230, 406, 529
MroNI GCCGGC 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 108
MspI CCGG 5 cut(s) 62, 75, 209, 237, 484
MvnI CGCG 2 cut(s) 332, 398
MwoI GCNNNNNNNGC 4 cut(s) 71, 331, 340, 484
NaeI GCCGGC 1 cut(s) 76
NarI GGCGCC 1 cut(s) 185
NdeII GATC 4 cut(s) 178, 244, 375, 498
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 139, 482
NlaIV GGNNCC 2 cut(s) 186, 241
NmuCI GTSAC 2 cut(s) 47, 319
NspI RCATGY 1 cut(s) 482
PdiI GCCGGC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 422, 512
PkrI GCNGC 6 cut(s) 67, 70, 73, 80, 142, 145
PleI GAGTC 2 cut(s) 92, 572
PluTI GGCGCC 1 cut(s) 188
PpsI GAGTC 2 cut(s) 92, 572
Ppu21I YACGTR 2 cut(s) 92, 548
PshAI GACNNNNGTC 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 186, 241
RsaI GTAC 5 cut(s) 260, 292, 355, 546, 550
RsaNI GTAC 5 cut(s) 259, 291, 354, 545, 549
SatI GCNGC 6 cut(s) 66, 69, 72, 79, 141, 144
Sau3AI GATC 4 cut(s) 178, 244, 375, 498
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 2 cut(s) 92, 573
SduI GDGCHC 1 cut(s) 535
SetI ASST 6 cut(s) 40, 83, 94, 109, 227, 550
SfoI GGCGCC 1 cut(s) 186
SgrAI CRCCGGYG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
SnaBI TACGTA 1 cut(s) 548
SsiI CCGC 5 cut(s) 65, 84, 140, 143, 493
SspDI GGCGCC 1 cut(s) 184
SspMI CTAG 3 cut(s) 35, 288, 474
TaaI ACNGT 2 cut(s) 258, 347
TaiI ACGT 2 cut(s) 94, 550
TatI WGTACW 1 cut(s) 353
TauI GCSGC 3 cut(s) 68, 143, 146
TfiI GAWTC 2 cut(s) 422, 512
TscAI CASTG 2 cut(s) 195, 324
TseFI GTSAC 2 cut(s) 47, 319
TseI GCWGC 3 cut(s) 68, 71, 78
Tsp45I GTSAC 2 cut(s) 47, 319
TspDTI ATGAA 4 cut(s) 109, 124, 354, 569
TspRI CASTG 2 cut(s) 195, 324
XceI RCATGY 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 3 cut(s) 35, 288, 474
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.