Rh6CG198000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000739
Physical Location & Seq
Reverse (-)
33010870 .. 33011172
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG198000.1

Sequence Viewer

Length: 303 bp
ATGATCGGAAAGGCTGGATCTTCTCTCTTCTCTATTCGTTCTTCTGGTGACGGTGGTGGGCTTCGTCTTTTTCATGGTTTCTTCTTTGTTGCTTCTAGCATTTCTCTGTTTATTGGGAGCATCTTTGCTTTACGGTCGGGGATTTATCTGGGTGGTGGTACTCCTCTGGTAGTTGAAGCGATGGCGGCGAATCATGGTGTTGGTGGACTTGAGTTTGGCAGCGAGGTGGACTTGGTGGAGTCGGTCGTCTTCTTGTGGCCAAATGCTGAATATGATGGTGGCTTGATGCGCAGTGGGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.28

Weight (kDa)

5.08

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 290
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 257
AfaI GTAC 1 cut(s) 160
AgsI TTSAA 1 cut(s) 176
AlwI GGATC 1 cut(s) 25
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 219
AspLEI GCGC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 59
BalI TGGCCA 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 231
BccI CCATC 2 cut(s) 175, 269
BfaI CTAG 1 cut(s) 96
BisI GCNGC 2 cut(s) 186, 220
BlsI GCNGC 2 cut(s) 187, 221
BmsI GCATC 2 cut(s) 129, 276
BpiI GAAGAC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 231
Bsh1285I CGRYCG 2 cut(s) 137, 246
BshFI GGCC 1 cut(s) 259
BsiEI CGRYCG 2 cut(s) 137, 246
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 3, 17
BspACI CCGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 259
BspPI GGATC 1 cut(s) 25
BssMI GATC 2 cut(s) 3, 17
Bst4CI ACNGT 2 cut(s) 53, 135
Bst6I CTCTTC 1 cut(s) 32
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 2 cut(s) 6, 20
BstMBI GATC 2 cut(s) 3, 17
BstMCI CGRYCG 2 cut(s) 137, 246
BstMWI GCNNNNNNNGC 2 cut(s) 185, 288
BstV1I GCAGC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuRI GGCC 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
CfoI GCGC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 159
CviAII CATG 2 cut(s) 74, 194
CviJI RGCY 4 cut(s) 14, 61, 259, 282
CviKI_1 RGCY 4 cut(s) 14, 61, 259, 282
CviQI GTAC 1 cut(s) 159
DpnI GATC 2 cut(s) 5, 19
DpnII GATC 2 cut(s) 3, 17
EaeI YGGCCR 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
FaeI CATG 2 cut(s) 77, 197
FaiI YATR 3 cut(s) 75, 195, 273
FatI CATG 2 cut(s) 73, 193
Fnu4HI GCNGC 2 cut(s) 186, 220
Fsp4HI GCNGC 2 cut(s) 186, 220
FspBI CTAG 1 cut(s) 96
FspI TGCGCA 1 cut(s) 290
GlaI GCGC 1 cut(s) 290
GluI GCNGC 2 cut(s) 186, 220
HaeIII GGCC 1 cut(s) 259
HhaI GCGC 1 cut(s) 291
Hin1II CATG 2 cut(s) 77, 197
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HinfI GANTC 2 cut(s) 190, 239
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 206, 229
Hpy188I TCNGA 1 cut(s) 8
Hpy8I GTNNAC 2 cut(s) 206, 229
HpyCH4III ACNGT 2 cut(s) 53, 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 288
Hsp92II CATG 2 cut(s) 77, 197
HspAI GCGC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 3, 17
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 3 cut(s) 30, 134, 152
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 2 cut(s) 129, 276
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 5, 19
MboI GATC 2 cut(s) 3, 17
MboII GAAGA 5 cut(s) 12, 19, 33, 73, 241
MflI RGATCY 1 cut(s) 17
MlsI TGGCCA 1 cut(s) 259
MluNI TGGCCA 1 cut(s) 259
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 2 cut(s) 174, 217
Mox20I TGGCCA 1 cut(s) 259
MscI TGGCCA 1 cut(s) 259
Msp20I TGGCCA 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 185, 288
NdeII GATC 2 cut(s) 3, 17
NlaIII CATG 2 cut(s) 77, 197
NmuCI GTSAC 1 cut(s) 47
NsbI TGCGCA 1 cut(s) 290
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 187, 221
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SatI GCNGC 2 cut(s) 186, 220
Sau3AI GATC 2 cut(s) 3, 17
SchI GAGTC 1 cut(s) 248
SetI ASST 1 cut(s) 228
SfaNI GCATC 2 cut(s) 129, 276
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SsiI CCGC 1 cut(s) 185
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 53, 135
TaqII GACCGA 1 cut(s) 232
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 1 cut(s) 190
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 62
TspRI CASTG 1 cut(s) 298
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.