Rroxscaffold_7G00172730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000739
Physical Location & Seq
Reverse (-)
12885628 .. 12886536
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172730.1

Sequence Viewer

Length: 162 bp
ATGACGGCAAGCCATGGATTTTGTGGACTTGAGTCTGTCAGCAATGGAGATCCTGTCATGAAATGCGGTGGTTCACTGGTCATGATTTTGGAATCCGGATTGATTCGATCCCATTCCAATGGTTTCAATGTGGGTGGAAGTGATGCATTGTTTGATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.37

Weight (kDa)

4.8

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 95
AciI CCGC 1 cut(s) 66
AclWI GGATC 2 cut(s) 44, 102
AgsI TTSAA 1 cut(s) 127
AlwI GGATC 2 cut(s) 44, 102
Aor13HI TCCGGA 1 cut(s) 95
BceAI ACGGC 1 cut(s) 21
BmsI GCATC 2 cut(s) 133, 145
BoxI GACNNNNGTC 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 13
BseMI GCAATG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 96
Bsp13I TCCGGA 1 cut(s) 95
Bsp143I GATC 2 cut(s) 49, 107
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 1 cut(s) 66
BspEI TCCGGA 1 cut(s) 95
BspHI TCATGA 2 cut(s) 57, 81
BspPI GGATC 2 cut(s) 44, 102
BsrDI GCAATG 1 cut(s) 49
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 49, 107
BssT1I CCWWGG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 10
BstDSI CCRYGG 1 cut(s) 13
BstKTI GATC 2 cut(s) 52, 110
BstMBI GATC 2 cut(s) 49, 107
BstPAI GACNNNNGTC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 49
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 10
CciI TCATGA 2 cut(s) 57, 81
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 4 cut(s) 14, 58, 82, 159
CviJI RGCY 1 cut(s) 12
CviKI_1 RGCY 1 cut(s) 12
DpnI GATC 2 cut(s) 51, 109
DpnII GATC 2 cut(s) 49, 107
Eco130I CCWWGG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 2 cut(s) 148, 160
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 4 cut(s) 17, 61, 85, 162
FaiI YATR 4 cut(s) 15, 59, 83, 160
FatI CATG 4 cut(s) 13, 57, 81, 158
HapII CCGG 1 cut(s) 96
Hin1II CATG 4 cut(s) 17, 61, 85, 162
HinfI GANTC 3 cut(s) 32, 92, 103
HpaII CCGG 1 cut(s) 96
Hpy166II GTNNAC 2 cut(s) 26, 74
Hpy188III TCNNGA 3 cut(s) 58, 82, 96
Hpy8I GTNNAC 2 cut(s) 26, 74
HpyCH4V TGCA 2 cut(s) 146, 158
Hsp92II CATG 4 cut(s) 17, 61, 85, 162
Kpn2I TCCGGA 1 cut(s) 95
Kzo9I GATC 2 cut(s) 49, 107
LpnPI CCDG 3 cut(s) 62, 66, 109
LweI GCATC 2 cut(s) 133, 145
MalI GATC 2 cut(s) 51, 109
MboI GATC 2 cut(s) 49, 107
MflI RGATCY 1 cut(s) 49
MlyI GAGTC 1 cut(s) 41
Mph1103I ATGCAT 2 cut(s) 148, 160
MroI TCCGGA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 1 cut(s) 96
NcoI CCATGG 1 cut(s) 13
NdeII GATC 2 cut(s) 49, 107
NlaIII CATG 4 cut(s) 17, 61, 85, 162
NsiI ATGCAT 2 cut(s) 148, 160
PagI TCATGA 2 cut(s) 57, 81
PfeI GAWTC 2 cut(s) 92, 103
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PshAI GACNNNNGTC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 117
Sau3AI GATC 2 cut(s) 49, 107
SchI GAGTC 1 cut(s) 41
SfaNI GCATC 2 cut(s) 133, 145
SgeI CNNG 8 cut(s) 21, 26, 41, 65, 70, 89, 94, 108
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SsiI CCGC 1 cut(s) 66
StyI CCWWGG 1 cut(s) 13
TaqI TCGA 1 cut(s) 106
TfiI GAWTC 2 cut(s) 92, 103
TscAI CASTG 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 20
Zsp2I ATGCAT 2 cut(s) 148, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.