Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

12503785 .. 12504399

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCCGGGGGATCTCTCGGTGGTGGTGCTTTGATGGCGGCGGTGAAGTCGGTGCGACATGGTTTCAAGTCTGGCAGCGTTGTGGCGTTTCCTGGGTGGCTCGTTGATGGTGGAAGGGATGAGAGCGAGCCTTTGGACTGTTTCATGTTTCTACACACGTCGTTCGAACCGGGTGGATTGGATTTGGTTTTGGTAGTGTTTGTCGTTGCTGTCCGGGTGGCGGAGGATGGCGGAGATGTGGTGGCTGTGATGGTCGTAGCAGCGCCGGCGGTCTTGATGCTGTCGGTGGAGGTTCTGTGCAGGCTAGGGTTTCCCAGGGTTGGTATTTCTGGGCCTCAAGTTGGAGGCTGGGCCTTCTTTGTGTGGGCTTGGGCCTCCTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.28

Weight (kDa)

4.88

Isoelectric Point (pI)

26.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	38, 41, 221, 231, 269
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	3 cut(s)	220, 320, 341
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	159
AjnI	CCWGG	2 cut(s)	91, 314
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	4 cut(s)	3, 332, 351, 372
ApeKI	GCWGC	2 cut(s)	75, 260
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	332, 351, 372
AsuC2I	CCSGG	3 cut(s)	7, 171, 215
AsuHPI	GGTGA	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	87, 272
BccI	CCATC	4 cut(s)	28, 101, 221, 244
BciT130I	CCWGG	2 cut(s)	93, 316
BcnI	CCSGG	3 cut(s)	7, 171, 215
BfaI	CTAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	3 cut(s)	39, 76, 261
BlsI	GCNGC	3 cut(s)	40, 77, 262
Bme1390I	CCNGG	5 cut(s)	7, 93, 171, 215, 316
BmgBI	CACGTC	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	332, 351, 372
BmrFI	CCNGG	5 cut(s)	7, 93, 171, 215, 316
BmsI	GCATC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	321
BpuMI	CCSGG	3 cut(s)	7, 171, 215
BsaJI	CCNNGG	4 cut(s)	6, 92, 314, 315
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 320, 341
Bse118I	RCCGGY	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	93, 316
BseDI	CCNNGG	4 cut(s)	6, 92, 314, 315
BseGI	GGATG	2 cut(s)	124, 232
BseLI	CCNNNNNNNGG	3 cut(s)	220, 320, 341
BseXI	GCAGC	2 cut(s)	87, 272
BseYI	CCCAGC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	319
BshFI	GGCC	4 cut(s)	5, 334, 353, 374
BsiSI	CCGG	4 cut(s)	6, 170, 214, 266
BslI	CCNNNNNNNGG	3 cut(s)	220, 320, 341
BsnI	GGCC	4 cut(s)	5, 334, 353, 374
Bsp119I	TTCGAA	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	5 cut(s)	38, 41, 221, 231, 269
BspANI	GGCC	4 cut(s)	5, 334, 353, 374
BspPI	GGATC	1 cut(s)	19
BspT104I	TTCGAA	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	4 cut(s)	6, 92, 314, 315
BssMI	GATC	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	93, 316
Bst4CI	ACNGT	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	128, 267, 302
BstF5I	GGATG	2 cut(s)	124, 232
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 266
BstNI	CCWGG	2 cut(s)	93, 316
BstSCI	CCNGG	5 cut(s)	5, 91, 169, 213, 314
BstV1I	GCAGC	2 cut(s)	87, 272
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuRI	GGCC	4 cut(s)	5, 334, 353, 374
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	124, 232
Cac8I	GCNNGC	3 cut(s)	128, 267, 302
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	332, 351, 372
CviAII	CATG	2 cut(s)	59, 145
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	236, 246
EcoRII	CCWGG	2 cut(s)	91, 314
FaeI	CATG	2 cut(s)	62, 148
FaiI	YATR	2 cut(s)	60, 146
FatI	CATG	2 cut(s)	58, 144
Fnu4HI	GCNGC	3 cut(s)	39, 76, 261
FokI	GGATG	2 cut(s)	131, 239
Fsp4HI	GCNGC	3 cut(s)	39, 76, 261
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	39, 76, 261
GsaI	CCCAGC	1 cut(s)	352
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	4 cut(s)	5, 334, 353, 374
HapII	CCGG	4 cut(s)	6, 170, 214, 266
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	62, 148
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HpaII	CCGG	4 cut(s)	6, 170, 214, 266
HphI	GGTGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	108, 364
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 266
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	2 cut(s)	62, 148
HspAI	GCGC	1 cut(s)	263
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	11
Lsp1109I	GCAGC	2 cut(s)	87, 272
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	158
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MflI	RGATCY	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	5 cut(s)	217, 283, 338, 345, 385
MreI	CGCCGGCG	1 cut(s)	265
MroNI	GCCGGC	1 cut(s)	265
MspI	CCGG	4 cut(s)	6, 170, 214, 266
MspR9I	CCNGG	5 cut(s)	7, 93, 171, 215, 316
MvaI	CCWGG	2 cut(s)	93, 316
MwoI	GCNNNNNNNGC	2 cut(s)	35, 266
NaeI	GCCGGC	1 cut(s)	267
NciI	CCSGG	3 cut(s)	7, 171, 215
NdeII	GATC	1 cut(s)	11
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	62, 148
NspV	TTCGAA	1 cut(s)	165
PasI	CCCWGGG	1 cut(s)	315
PdiI	GCCGGC	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	40, 77, 262
Psp6I	CCWGG	2 cut(s)	91, 314
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	2 cut(s)	91, 314
PspPI	GGNCC	3 cut(s)	332, 351, 372
PsuI	RGATCY	1 cut(s)	11
SatI	GCNGC	3 cut(s)	39, 76, 261
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	3 cut(s)	332, 351, 372
ScrFI	CCNGG	5 cut(s)	7, 93, 171, 215, 316
SetI	ASST	2 cut(s)	161, 294
SfaNI	GCATC	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	165
SgrAI	CRCCGGYG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
SsiI	CCGC	5 cut(s)	38, 41, 221, 231, 269
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	5 cut(s)	5, 91, 169, 213, 314
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	165
TauI	GCSGC	1 cut(s)	41
TseI	GCWGC	2 cut(s)	75, 260
TspDTI	ATGAA	1 cut(s)	133
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.