RchiOBHm_Chr5g0069801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000739
Physical Location & Seq
Forward (+)
75641480 .. 75641973
494 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34517

Sequence Viewer

Length: 300 bp
ATGATCGGAAAGGTGGGATTTTCTCTTCTCTCTGATCGCTCTTCCGAGGACGGCGGTGAGCTTCGACTTCATCGAGTTGCTGAGTTTGCTGCATCTGGTCATCTTCTGTTGACTGGAGGCGCCTTTGCCTTATGGTCGGGGGGATATCTCGGTGGTGGTGCTCTGATGGAGACTGCATCAGTGATGCGGCATGGTTTCAAGTCTGGCAGCGATGTGGCTTTTTCTAGGTGGCTCGTTGATGGTGAAAGGAACGAGAGTGAGTCTTTTGGTTATTTCATGTTTCTACCCACGTCGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.63

Weight (kDa)

5.48

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 2 cut(s) 54, 187
AcyI GRCGYC 1 cut(s) 120
AgsI TTSAA 1 cut(s) 199
AjiI CACGTC 1 cut(s) 291
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 89, 207
AspLEI GCGC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 68, 254
BanI GGYRCC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 76, 219
BccI CCATC 2 cut(s) 160, 233
BceAI ACGGC 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 123
BisI GCNGC 3 cut(s) 90, 188, 208
BlsI GCNGC 3 cut(s) 91, 189, 209
BmgBI CACGTC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 121
BmsI GCATC 3 cut(s) 101, 174, 185
BpmI CTGGAG 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 76, 219
BshNI GGYRCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 3, 34
BspACI CCGC 2 cut(s) 54, 187
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 2 cut(s) 3, 34
BssNI GRCGYC 1 cut(s) 120
Bst6I CTCTTC 2 cut(s) 30, 46
BstACI GRCGYC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 6, 37
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 3, 34
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 76, 219
BtgZI GCGATG 1 cut(s) 225
BtrI CACGTC 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 186
CfoI GCGC 1 cut(s) 122
CviAII CATG 2 cut(s) 191, 277
CviJI RGCY 3 cut(s) 61, 218, 232
CviKI_1 RGCY 3 cut(s) 61, 218, 232
DdeI CTNAG 1 cut(s) 81
DinI GGCGCC 1 cut(s) 121
DpnI GATC 2 cut(s) 5, 36
DpnII GATC 2 cut(s) 3, 34
Eam1104I CTCTTC 2 cut(s) 30, 46
EarI CTCTTC 2 cut(s) 30, 46
Eco32I GATATC 1 cut(s) 146
EcoRV GATATC 1 cut(s) 146
EgeI GGCGCC 1 cut(s) 121
EheI GGCGCC 1 cut(s) 121
FaeI CATG 2 cut(s) 194, 280
FaiI YATR 3 cut(s) 133, 192, 278
FatI CATG 2 cut(s) 190, 276
Fnu4HI GCNGC 3 cut(s) 90, 188, 208
Fsp4HI GCNGC 3 cut(s) 90, 188, 208
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 121
GluI GCNGC 3 cut(s) 90, 188, 208
GsuI CTGGAG 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 123
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 2 cut(s) 194, 280
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 1 cut(s) 260
HphI GGTGA 2 cut(s) 68, 254
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 4 cut(s) 8, 34, 46, 165
Hpy8I GTNNAC 1 cut(s) 111
Hpy99I CGWCG 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 2 cut(s) 92, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 290
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 2 cut(s) 194, 280
HspAI GCGC 1 cut(s) 120
KasI GGCGCC 1 cut(s) 119
Kzo9I GATC 2 cut(s) 3, 34
LguI GCTCTTC 1 cut(s) 46
LpnPI CCDG 3 cut(s) 81, 99, 189
Lsp1109I GCAGC 2 cut(s) 76, 219
LweI GCATC 3 cut(s) 101, 174, 185
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 290
MalI GATC 2 cut(s) 5, 36
MboI GATC 2 cut(s) 3, 34
MboII GAAGA 3 cut(s) 17, 33, 95
MhlI GDGCHC 1 cut(s) 163
Mly113I GGCGCC 1 cut(s) 120
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 2 cut(s) 40, 110
MwoI GCNNNNNNNGC 1 cut(s) 86
NarI GGCGCC 1 cut(s) 120
NdeII GATC 2 cut(s) 3, 34
NlaIII CATG 2 cut(s) 194, 280
NlaIV GGNNCC 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PkrI GCNGC 3 cut(s) 91, 189, 209
PleI GAGTC 1 cut(s) 268
PluTI GGCGCC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 46
SatI GCNGC 3 cut(s) 90, 188, 208
Sau3AI GATC 2 cut(s) 3, 34
SchI GAGTC 1 cut(s) 269
SduI GDGCHC 1 cut(s) 163
SetI ASST 4 cut(s) 15, 63, 230, 293
SfaNI GCATC 3 cut(s) 101, 174, 185
SfoI GGCGCC 1 cut(s) 121
SsiI CCGC 2 cut(s) 54, 187
SspDI GGCGCC 1 cut(s) 119
SspMI CTAG 1 cut(s) 225
TaiI ACGT 1 cut(s) 293
TaqI TCGA 2 cut(s) 64, 73
TauI GCSGC 1 cut(s) 190
TscAI CASTG 1 cut(s) 186
TseI GCWGC 2 cut(s) 89, 207
TspDTI ATGAA 2 cut(s) 59, 265
TspRI CASTG 1 cut(s) 186
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.