Rh7DG269900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000739
Physical Location & Seq
Forward (+)
28912495 .. 28913369
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG269900.1

Sequence Viewer

Length: 408 bp
ATGGCGGCTGCAACGGTGGTGCGGCATGGTTTCGAGTCTGGCAGCGATGTGGCTTTTTCTGGGCTGCTCGTTGATGGTGGAAGGAATGAGAGCGAGCCTTTTGGCTGTTTCCTATTTCTTCCCACGTCGTTCGAACCGGGTGAATTGGATATGGTTTTGGTACTGTTCGTCGATGTTGTCCGGGTTGCGGAGGATGGTGGCGATGTGGTGGCTGGTCTGGATGATTGGCTGGGAGCGATGGGATCGGTGATGGTCGTAGCAGCGTCGGCGGTCTTGGTGCTGTTGGTCATTTGCAGCGGCGACAATGACTGTGGCGGCAGCGGCAGTGCTAATGGTGTTCCCGATGAGTGGGACGGCTGCTTTGATGCTAGGGTTTCATGGGAGAAGAGTGAAACCAAATTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.09

Weight (kDa)

4.05

Isoelectric Point (pI)

27.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 5, 22, 188, 269, 297, 315, 321
AclWI GGATC 1 cut(s) 250
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 187, 348
AjiI CACGTC 1 cut(s) 126
AlwI GGATC 1 cut(s) 250
ApeKI GCWGC 7 cut(s) 8, 42, 64, 260, 294, 318, 357
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AsuC2I CCSGG 2 cut(s) 138, 182
AsuHPI GGTGA 2 cut(s) 152, 259
AsuII TTCGAA 1 cut(s) 132
BbvI GCAGC 6 cut(s) 51, 54, 272, 306, 330, 344
BccI CCATC 4 cut(s) 68, 188, 232, 244
BceAI ACGGC 1 cut(s) 370
BcnI CCSGG 2 cut(s) 138, 182
BfaI CTAG 1 cut(s) 369
Bme1390I CCNGG 2 cut(s) 138, 182
BmgBI CACGTC 1 cut(s) 126
BmrFI CCNGG 2 cut(s) 138, 182
BmsI GCATC 1 cut(s) 355
Bpu14I TTCGAA 1 cut(s) 132
BpuMI CCSGG 2 cut(s) 138, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 348
BseGI GGATG 2 cut(s) 199, 226
BseLI CCNNNNNNNGG 2 cut(s) 187, 348
BseXI GCAGC 6 cut(s) 51, 54, 272, 306, 330, 344
BseYI CCCAGC 1 cut(s) 229
BsiSI CCGG 2 cut(s) 137, 181
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 187, 348
BsmFI GGGAC 1 cut(s) 365
Bsp119I TTCGAA 1 cut(s) 132
Bsp143I GATC 1 cut(s) 242
BspACI CCGC 7 cut(s) 5, 22, 188, 269, 297, 315, 321
BspPI GGATC 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 132
BssMI GATC 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 16, 165, 311
Bst6I CTCTTC 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 2 cut(s) 199, 226
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 266, 321
BstSCI CCNGG 2 cut(s) 136, 180
BstV1I GCAGC 6 cut(s) 51, 54, 272, 306, 330, 344
BtgZI GCGATG 3 cut(s) 60, 216, 251
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 2 cut(s) 199, 226
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 95
CseI GACGC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 161
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 2 cut(s) 26, 378
CviJI RGCY 8 cut(s) 8, 53, 64, 97, 105, 212, 229, 357
CviKI_1 RGCY 8 cut(s) 8, 53, 64, 97, 105, 212, 229, 357
CviQI GTAC 1 cut(s) 161
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
FaeI CATG 2 cut(s) 29, 381
FaiI YATR 3 cut(s) 27, 152, 379
FaqI GGGAC 1 cut(s) 365
FatI CATG 2 cut(s) 25, 377
FokI GGATG 2 cut(s) 206, 233
FspBI CTAG 1 cut(s) 369
GsaI CCCAGC 1 cut(s) 233
HapII CCGG 2 cut(s) 137, 181
HgaI GACGC 1 cut(s) 252
Hin1II CATG 2 cut(s) 29, 381
HinfI GANTC 1 cut(s) 35
HpaII CCGG 2 cut(s) 137, 181
HphI GGTGA 2 cut(s) 152, 259
Hpy188III TCNNGA 2 cut(s) 218, 341
Hpy99I CGWCG 3 cut(s) 130, 173, 268
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 3 cut(s) 16, 165, 311
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 11, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 321
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 2 cut(s) 29, 381
Kzo9I GATC 1 cut(s) 242
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 7 cut(s) 24, 45, 150, 194, 198, 203, 215
Lsp1109I GCAGC 6 cut(s) 51, 54, 272, 306, 330, 344
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 125
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 2 cut(s) 110, 397
MluCI AATT 2 cut(s) 143, 398
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 1 cut(s) 184
MseI TTAA 1 cut(s) 406
MspA1I CMGCKG 2 cut(s) 297, 321
MspI CCGG 2 cut(s) 137, 181
MspR9I CCNGG 2 cut(s) 138, 182
MwoI GCNNNNNNNGC 2 cut(s) 266, 321
NciI CCSGG 2 cut(s) 138, 182
NdeII GATC 1 cut(s) 242
NlaIII CATG 2 cut(s) 29, 381
NspV TTCGAA 1 cut(s) 132
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 229
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 406
Sau3AI GATC 1 cut(s) 242
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 138, 182
SetI ASST 1 cut(s) 128
SfaNI GCATC 1 cut(s) 355
SfuI TTCGAA 1 cut(s) 132
Sse9I AATT 2 cut(s) 143, 398
SsiI CCGC 7 cut(s) 5, 22, 188, 269, 297, 315, 321
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 136, 180
TaaI ACNGT 3 cut(s) 16, 165, 311
TaiI ACGT 1 cut(s) 128
TaqI TCGA 3 cut(s) 33, 132, 171
TasI AATT 2 cut(s) 143, 398
TauI GCSGC 5 cut(s) 8, 25, 300, 318, 324
Tru1I TTAA 1 cut(s) 406
Tru9I TTAA 1 cut(s) 406
TscAI CASTG 1 cut(s) 331
TseI GCWGC 7 cut(s) 8, 42, 64, 260, 294, 318, 357
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 1 cut(s) 331
XapI RAATTY 1 cut(s) 398
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.