RchiOBHm_Chr2g0098731
BZIP Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000739
Physical Location & Seq
Reverse (-)
11076524 .. 11077334
811 bp
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UTR
Exon/CDS
Intron
PRQ47351

Sequence Viewer

Length: 678 bp
ATGTTGTCATCAACTGGTAGTGAAGAAAGCAACTACAACTCATCTTCCTGGTCTTCCCCCACCACAACACCCGCTTCTCCTTTCTCGCAGGCAACCCCAAGAAGAACCATGGAGGAGGTCTGGAAGGACATCAACCTCGCCTCGCTTTCGGACTCCAACAACTCACTCAACAACAATCCCAACTTCAGAAACATGACCCTCCAGGACTTTCTGGCAAGGCCCTTTGGCAATGTGGTCTCTCCCAGACCCGAACACCACCACCATCACCACACCACTCGCAACTCTCCTCCTCCTCCTCAAGCTGTGATGCCGAGCCCAGCCACTGTTCTGAGCTTGAATCATTTGAGCTCGGACCAGTTTCAGCTCTTCTGTTTAGAGAATCTCAACACTAGTCCTATTGTTAACATCAACCACCCCAATAGTAGTACTGTTTCTGATAACTCTTTCAGTGGTGCTTACCCATTTGAGGGTCTCGGAAACCAATCTTCTCCTTCTTCTGGGTTGGTTATGCCGTCGGGTTTTGGGGTCGGGAAGAAGAGGTTACCGGAATCTGATCGCAGCAACTTCGGAGGAGGAGATCGGAGACACAAGCGGATGATCAAGAATAGAGAATCTGCTGCAAGATCCAGAGCAAGGAAGCAGGAATATTGCTGTCCCTATAATTCTCAAAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

225

Amino Acids

24.91

Weight (kDa)

9.3

Isoelectric Point (pI)

76.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 194 - 217 2.2e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 592
AclWI GGATC 1 cut(s) 618
AcuI CTGAAG 1 cut(s) 169
AfaI GTAC 2 cut(s) 427, 674
AfiI CCNNNNNNNGG 4 cut(s) 466, 467, 497, 633
AgsI TTSAA 1 cut(s) 337
AhlI ACTAGT 1 cut(s) 389
AjnI CCWGG 2 cut(s) 47, 201
AluBI AGCT 4 cut(s) 302, 333, 348, 364
AluI AGCT 4 cut(s) 302, 333, 348, 364
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 3 cut(s) 241, 476, 577
AlwI GGATC 1 cut(s) 618
AlwNI CAGNNNCTG 1 cut(s) 323
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 2 cut(s) 558, 617
AspS9I GGNCC 2 cut(s) 219, 352
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 1 cut(s) 352
BanII GRGCYC 2 cut(s) 317, 350
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 570, 604
BccI CCATC 1 cut(s) 270
BceAI ACGGC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 547, 581
BciT130I CCWGG 2 cut(s) 49, 203
BclI TGATCA 1 cut(s) 597
BcoDI GTCTC 3 cut(s) 241, 476, 577
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 1 cut(s) 390
BisI GCNGC 2 cut(s) 559, 618
BlsI GCNGC 2 cut(s) 560, 619
BmcAI AGTACT 2 cut(s) 427, 674
Bme1390I CCNGG 2 cut(s) 49, 203
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 219, 352
BmrFI CCNGG 2 cut(s) 49, 203
BmsI GCATC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 282
BsaI GGTCTC 2 cut(s) 241, 476
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 4 cut(s) 466, 467, 497, 633
Bse1I ACTGG 2 cut(s) 19, 355
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 49, 203
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 600
BseLI CCNNNNNNNGG 4 cut(s) 466, 467, 497, 633
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 19, 355
BseRI GAGGAG 7 cut(s) 128, 276, 279, 282, 285, 585, 588
BseXI GCAGC 2 cut(s) 570, 604
BseYI CCCAGC 1 cut(s) 316
BshFI GGCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 4 cut(s) 466, 467, 497, 633
BsmAI GTCTC 3 cut(s) 241, 476, 577
BsmFI GGGAC 1 cut(s) 639
BsnI GGCC 1 cut(s) 220
Bso31I GGTCTC 2 cut(s) 241, 476
Bsp1286I GDGCHC 2 cut(s) 317, 350
Bsp143I GATC 4 cut(s) 553, 577, 597, 623
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 72, 592
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 321
BspPI GGATC 1 cut(s) 618
BspQI GCTCTTC 1 cut(s) 371
BspTNI GGTCTC 2 cut(s) 241, 476
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 2 cut(s) 19, 355
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 4 cut(s) 553, 577, 597, 623
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 49, 203
Bst4CI ACNGT 2 cut(s) 325, 430
Bst6I CTCTTC 2 cut(s) 371, 530
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 540
BstF5I GGATG 1 cut(s) 600
BstKTI GATC 4 cut(s) 556, 580, 600, 626
BstMAI GTCTC 3 cut(s) 241, 476, 577
BstMBI GATC 4 cut(s) 553, 577, 597, 623
BstNI CCWGG 2 cut(s) 49, 203
BstPI GGTNACC 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 47, 201
BstV1I GCAGC 2 cut(s) 570, 604
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 321, 454
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 219, 352
Csp6I GTAC 2 cut(s) 426, 673
CviAII CATG 2 cut(s) 109, 193
CviJI RGCY 7 cut(s) 220, 302, 315, 320, 333, 348, 364
CviKI_1 RGCY 7 cut(s) 220, 302, 315, 320, 333, 348, 364
CviQI GTAC 2 cut(s) 426, 673
DdeI CTNAG 1 cut(s) 329
DpnI GATC 4 cut(s) 555, 579, 599, 625
DpnII GATC 4 cut(s) 553, 577, 597, 623
Eam1104I CTCTTC 2 cut(s) 371, 530
EarI CTCTTC 2 cut(s) 371, 530
Ecl136II GAGCTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 2 cut(s) 317, 350
Eco31I GGTCTC 2 cut(s) 241, 476
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 169
Eco91I GGTNACC 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 219
EcoO65I GGTNACC 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 47, 201
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 317, 350
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 112, 196
FaiI YATR 4 cut(s) 110, 194, 509, 660
FaqI GGGAC 1 cut(s) 639
FatI CATG 2 cut(s) 108, 192
FauI CCCGC 1 cut(s) 79
FbaI TGATCA 1 cut(s) 597
Fnu4HI GCNGC 2 cut(s) 559, 618
FokI GGATG 1 cut(s) 607
FriOI GRGCYC 2 cut(s) 317, 350
Fsp4HI GCNGC 2 cut(s) 559, 618
FspBI CTAG 1 cut(s) 390
GluI GCNGC 2 cut(s) 559, 618
GsaI CCCAGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 1 cut(s) 220
HapII CCGG 1 cut(s) 545
Hin1II CATG 2 cut(s) 112, 196
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 5 cut(s) 152, 337, 379, 548, 611
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 1 cut(s) 545
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 9 cut(s) 151, 188, 330, 352, 436, 476, 553, 569, 582
Hpy188III TCNNGA 4 cut(s) 121, 529, 601, 627
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 1 cut(s) 517
HpyAV CCTTC 2 cut(s) 118, 501
HpyCH4III ACNGT 2 cut(s) 325, 430
HpyCH4V TGCA 1 cut(s) 620
HpyF3I CTNAG 1 cut(s) 329
Hsp92II CATG 2 cut(s) 112, 196
Ksp22I TGATCA 1 cut(s) 597
KspAI GTTAAC 1 cut(s) 403
Kzo9I GATC 4 cut(s) 553, 577, 597, 623
LguI GCTCTTC 1 cut(s) 371
Lsp1109I GCAGC 2 cut(s) 570, 604
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 540
MalI GATC 4 cut(s) 555, 579, 599, 625
MboI GATC 4 cut(s) 553, 577, 597, 623
MboII GAAGA 9 cut(s) 35, 36, 45, 114, 358, 477, 486, 544, 547
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 2 cut(s) 317, 350
MluCI AATT 1 cut(s) 661
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 180
MseI TTAA 1 cut(s) 402
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 2 cut(s) 49, 203
MvaI CCWGG 2 cut(s) 49, 203
NcoI CCATGG 1 cut(s) 108
NdeII GATC 4 cut(s) 553, 577, 597, 623
NlaIII CATG 2 cut(s) 112, 196
NmeAIII GCCGAG 1 cut(s) 336
PciSI GCTCTTC 1 cut(s) 371
PfeI GAWTC 4 cut(s) 337, 379, 548, 611
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 2 cut(s) 560, 619
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 47, 201
PspEI GGTNACC 1 cut(s) 540
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 2 cut(s) 47, 201
PspPI GGNCC 2 cut(s) 219, 352
PstNI CAGNNNCTG 1 cut(s) 323
PsuI RGATCY 1 cut(s) 623
RsaI GTAC 2 cut(s) 427, 674
RsaNI GTAC 2 cut(s) 426, 673
SacI GAGCTC 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 2 cut(s) 559, 618
Sau3AI GATC 4 cut(s) 553, 577, 597, 623
Sau96I GGNCC 2 cut(s) 219, 352
ScaI AGTACT 2 cut(s) 427, 674
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 49, 203
SduI GDGCHC 2 cut(s) 317, 350
SetI ASST 7 cut(s) 120, 138, 304, 335, 350, 366, 542
SfaNI GCATC 1 cut(s) 297
SinI GGWCC 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
SpeI ACTAGT 1 cut(s) 389
Sse9I AATT 1 cut(s) 661
SsiI CCGC 2 cut(s) 72, 592
SspI AATATT 1 cut(s) 647
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 350
StyD4I CCNGG 2 cut(s) 47, 201
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 325, 430
TasI AATT 1 cut(s) 661
TatI WGTACW 2 cut(s) 425, 672
TfiI GAWTC 4 cut(s) 337, 379, 548, 611
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 2 cut(s) 328, 454
TseI GCWGC 2 cut(s) 558, 617
TspRI CASTG 2 cut(s) 328, 454
VpaK11BI GGWCC 1 cut(s) 352
XspI CTAG 1 cut(s) 390
ZrmI AGTACT 2 cut(s) 427, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.