Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

23739719 .. 23741741

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGGCTGCGAAGGCGGTGCGGCATGGTTACAAGTCTGGCAGCGATGTGGCTTTTTCTGGGTGGCTCGTTGATGGCAGAAGGATTGAGGGCAAGCCGTTTGGCTATTTCATGTTTCTACCCACGTCGGTCGATCCGGGTAGATTGGATATGTGTTTGGCAGTGTTCGTCGATGTTGTCCGGGTTGCGGAGGATGGTGGCGATGTGGCAATAACCACAAGGACCCCAATGGATGTTGTAGGCCCTCTTGCCCACCGCCTAAGCCATTACGAGCACCACTACGATCATACCCACCCGGGCCGCCTCATATGCCACCACGACCACCCGTCAATCAGGGCGAGGAATGAGTATAAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.35

Weight (kDa)

6.79

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	17, 22, 188, 256, 301
AclWI	GGATC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	187
AhdI	GACNNNNNGTC	1 cut(s)	325
AjiI	CACGTC	1 cut(s)	126
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	128
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	2 cut(s)	241, 298
ApeKI	GCWGC	2 cut(s)	8, 42
AspS9I	GGNCC	3 cut(s)	222, 242, 298
AsuC2I	CCSGG	4 cut(s)	138, 182, 296, 297
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	2 cut(s)	68, 188
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	1 cut(s)	35
BcnI	CCSGG	4 cut(s)	138, 182, 296, 297
BfaI	CTAG	1 cut(s)	358
BisI	GCNGC	4 cut(s)	9, 23, 43, 301
BlsI	GCNGC	4 cut(s)	10, 24, 44, 302
Bme1390I	CCNGG	4 cut(s)	138, 182, 296, 297
Bme18I	GGWCC	1 cut(s)	222
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	295
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	3 cut(s)	222, 242, 298
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	4 cut(s)	138, 182, 296, 297
Bpu10I	CCTNAGC	1 cut(s)	260
BpuMI	CCSGG	4 cut(s)	138, 182, 296, 297
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	2 cut(s)	199, 238
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	243, 300
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	3 cut(s)	137, 181, 296
BslI	CCNNNNNNNGG	1 cut(s)	187
BsnI	GGCC	2 cut(s)	243, 300
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	133, 283
BspACI	CCGC	5 cut(s)	17, 22, 188, 256, 301
BspANI	GGCC	2 cut(s)	243, 300
BspLI	GGNNCC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	133, 283
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	199, 238
BstKTI	GATC	2 cut(s)	136, 286
BstMBI	GATC	2 cut(s)	133, 283
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 309
BstSCI	CCNGG	4 cut(s)	136, 180, 294, 295
BstV1I	GCAGC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	243, 300
BtgZI	GCGATG	2 cut(s)	60, 216
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	199, 238
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	222, 242, 298
Cfr9I	CCCGGG	1 cut(s)	295
CviAII	CATG	2 cut(s)	26, 112
CviJI	RGCY	9 cut(s)	8, 53, 67, 97, 105, 243, 264, 300, 355
CviKI_1	RGCY	9 cut(s)	8, 53, 67, 97, 105, 243, 264, 300, 355
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	2 cut(s)	135, 285
DpnII	GATC	2 cut(s)	133, 283
DriI	GACNNNNNGTC	1 cut(s)	325
Eam1105I	GACNNNNNGTC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	295
EcoO109I	RGGNCCY	2 cut(s)	222, 242
FaeI	CATG	2 cut(s)	29, 115
FaiI	YATR	7 cut(s)	27, 113, 152, 288, 308, 310, 351
FatI	CATG	2 cut(s)	25, 111
FauNDI	CATATG	1 cut(s)	308
Fnu4HI	GCNGC	4 cut(s)	9, 23, 43, 301
FokI	GGATG	2 cut(s)	206, 245
Fsp4HI	GCNGC	4 cut(s)	9, 23, 43, 301
FspBI	CTAG	1 cut(s)	358
GluI	GCNGC	4 cut(s)	9, 23, 43, 301
HaeIII	GGCC	2 cut(s)	243, 300
HapII	CCGG	3 cut(s)	137, 181, 296
Hin1II	CATG	2 cut(s)	29, 115
HpaII	CCGG	3 cut(s)	137, 181, 296
Hpy99I	CGWCG	2 cut(s)	130, 173
HpyAV	CCTTC	2 cut(s)	7, 75
HpyCH4IV	ACGT	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 309
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	29, 115
Kzo9I	GATC	2 cut(s)	133, 283
LpnPI	CCDG	6 cut(s)	24, 45, 150, 194, 309, 319
Lsp1109I	GCAGC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	358
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	2 cut(s)	135, 285
MboI	GATC	2 cut(s)	133, 283
MhlI	GDGCHC	1 cut(s)	276
MnlI	CCTC	5 cut(s)	82, 184, 255, 314, 333
MspI	CCGG	3 cut(s)	137, 181, 296
MspR9I	CCNGG	4 cut(s)	138, 182, 296, 297
MwoI	GCNNNNNNNGC	2 cut(s)	14, 309
NciI	CCSGG	4 cut(s)	138, 182, 296, 297
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	2 cut(s)	133, 283
NlaIII	CATG	2 cut(s)	29, 115
NlaIV	GGNNCC	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	10, 24, 44, 302
PpuMI	RGGWCCY	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	3 cut(s)	222, 242, 298
PspPPI	RGGWCCY	1 cut(s)	222
SatI	GCNGC	4 cut(s)	9, 23, 43, 301
Sau3AI	GATC	2 cut(s)	133, 283
Sau96I	GGNCC	3 cut(s)	222, 242, 298
ScrFI	CCNGG	4 cut(s)	138, 182, 296, 297
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	1 cut(s)	128
SinI	GGWCC	1 cut(s)	222
SmaI	CCCGGG	1 cut(s)	297
SsiI	CCGC	5 cut(s)	17, 22, 188, 256, 301
SspMI	CTAG	1 cut(s)	358
StyD4I	CCNGG	4 cut(s)	136, 180, 294, 295
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	132, 171
TaqII	GACCGA	1 cut(s)	118
TauI	GCSGC	2 cut(s)	25, 303
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	2 cut(s)	8, 42
TspDTI	ATGAA	1 cut(s)	100
TspMI	CCCGGG	1 cut(s)	295
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	222
XmaI	CCCGGG	1 cut(s)	295
XspI	CTAG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.