RLG00000016824
BZIP Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000739
Physical Location & Seq
Reverse (-)
10344284 .. 10347180
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016824

Sequence Viewer

Length: 969 bp
ATGTTGTCATCAACTGGTAGTGAAGAAAGCAACTACAACTCATCTTCCTGGTCTTCCCCTACCACAACACCCGCTTCTCCATTCTCGCAGGCAACCCCAAGAAGAACCATGGAGGAGGTCTGGAAGGACATCAACCTCGCCTCGCTTTCGGACTCCAACAACTCACTCAACAACAATCCCAACTTCAGAAACATGACCCTCCAGGACTTTCTGGCAAGGCCCTTTGGCAATGTGGTCTCTCCCAGACCCGATCACCACCACCATCATCACACCACTCGCAACTCTCCTCCTCCTCAAGCTGTGATGCCGAGCCCAGCCACTGTTCTGAGCTTGAATCATTTGAGCTCGGACCAGTTTCAGCTCTTCTGTATTGAGAATCTCAACACTAGGCCTATTGTTAACATCAACCACCCCAATAGTAGTACTGTTTCTGATAACTCTTTCAGTGGTGCTTACCCATTTGAGGGTCTCGGAAACCAATCTTCTCCTTCTTCTGGGTTGGTTATGCCGTCGGGTTTTGGGGTCGGGAAGAAGAGGTTACCGGAATCTGATCGTAGCAACTTCGGAGGAGGAGATCGGAGACACAAGCGGATGATCAAGAATAGAGAATCTGCTGCAAGATCCAGAGCAAGGAAGCAGGAATATTGCTGTCCCTATAATTCTCCAAAGGACGATGGTGGGTTTCGACTTCATCGAGTTGCTGAGTTTGCCGCATCTGGTAATATTCTGGTGACCAGAGGCGTCTTTGCCTTCTGGCCGGGGGGATATCTCGGTGGTGGTGCTCTGATGGCGGCTGTGAAGGCGGTGCGGCATGGTCTCAAGTCTGGCAGCGAGGTGGCTTTATCTGGGTGGCCCATTGACGGTGGAAGGGATGAGAGCGAGCCTTTTGGCTGTTTCATGTTTCTACCCATGTTGTTCGACCCGGGTGGATTGGATCTGGAATTGGCAGTGTTCGGCAGTGCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

323

Amino Acids

34.97

Weight (kDa)

8.37

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 193 - 216 3.6e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 72, 589, 711, 791, 803, 808
AclWI GGATC 2 cut(s) 615, 942
AcoI YGGCCR 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 169
AcyI GRCGYC 1 cut(s) 741
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 5 cut(s) 463, 464, 494, 630, 860
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 2 cut(s) 47, 201
AluBI AGCT 4 cut(s) 299, 330, 345, 361
AluI AGCT 4 cut(s) 299, 330, 345, 361
Alw21I GWGCWC 2 cut(s) 347, 784
Alw26I GTCTC 4 cut(s) 241, 473, 574, 821
AlwI GGATC 2 cut(s) 615, 942
AlwNI CAGNNNCTG 1 cut(s) 320
Ama87I CYCGRG 1 cut(s) 922
AoxI GGCC 4 cut(s) 218, 389, 755, 851
ApeKI GCWGC 2 cut(s) 614, 828
AspS9I GGNCC 3 cut(s) 219, 349, 852
AsuC2I CCSGG 3 cut(s) 759, 923, 924
AsuHPI GGTGA 2 cut(s) 245, 742
AvaI CYCGRG 1 cut(s) 922
AvaII GGWCC 1 cut(s) 349
BanII GRGCYC 2 cut(s) 314, 347
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 347, 784
BbvI GCAGC 2 cut(s) 601, 840
BccI CCATC 3 cut(s) 270, 668, 781
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 2 cut(s) 49, 203
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 3 cut(s) 759, 923, 924
BcoDI GTCTC 4 cut(s) 241, 473, 574, 821
BfaI CTAG 1 cut(s) 387
BisI GCNGC 5 cut(s) 615, 711, 792, 809, 829
BlsI GCNGC 5 cut(s) 616, 712, 793, 810, 830
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 5 cut(s) 49, 203, 759, 923, 924
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 922
BmgT120I GGNCC 3 cut(s) 219, 349, 852
BmrFI CCNGG 5 cut(s) 49, 203, 759, 923, 924
BmsI GCATC 2 cut(s) 294, 722
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 185
BpuEI CTTGAG 2 cut(s) 279, 803
BpuMI CCSGG 3 cut(s) 759, 923, 924
BsaHI GRCGYC 1 cut(s) 741
BsaI GGTCTC 3 cut(s) 241, 473, 821
BsaJI CCNNGG 3 cut(s) 108, 758, 922
BsaWI WCCGGW 1 cut(s) 541
Bsc4I CCNNNNNNNGG 5 cut(s) 463, 464, 494, 630, 860
Bse1I ACTGG 2 cut(s) 19, 352
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 49, 203
BseDI CCNNGG 3 cut(s) 108, 758, 922
BseGI GGATG 2 cut(s) 597, 877
BseLI CCNNNNNNNGG 5 cut(s) 463, 464, 494, 630, 860
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 317, 693
BseNI ACTGG 2 cut(s) 19, 352
BseRI GAGGAG 6 cut(s) 128, 276, 279, 282, 582, 585
BseXI GCAGC 2 cut(s) 601, 840
BseYI CCCAGC 1 cut(s) 313
BshFI GGCC 4 cut(s) 220, 391, 757, 853
BsiHKAI GWGCWC 2 cut(s) 347, 784
BsiHKCI CYCGRG 1 cut(s) 922
BsiSI CCGG 3 cut(s) 542, 758, 923
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 5 cut(s) 463, 464, 494, 630, 860
BsmAI GTCTC 4 cut(s) 241, 473, 574, 821
BsmFI GGGAC 1 cut(s) 636
BsnI GGCC 4 cut(s) 220, 391, 757, 853
Bso31I GGTCTC 3 cut(s) 241, 473, 821
BsoBI CYCGRG 1 cut(s) 922
Bsp1286I GDGCHC 3 cut(s) 314, 347, 784
Bsp143I GATC 6 cut(s) 250, 550, 574, 594, 620, 934
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 6 cut(s) 72, 589, 711, 791, 803, 808
BspANI GGCC 4 cut(s) 220, 391, 757, 853
BspCNI CTCAG 2 cut(s) 318, 694
BspPI GGATC 2 cut(s) 615, 942
BspQI GCTCTTC 1 cut(s) 368
BspTNI GGTCTC 3 cut(s) 241, 473, 821
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 2 cut(s) 19, 352
BssECI CCNNGG 3 cut(s) 108, 758, 922
BssMI GATC 6 cut(s) 250, 550, 574, 594, 620, 934
BssNI GRCGYC 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 49, 203
Bst4CI ACNGT 3 cut(s) 322, 427, 863
Bst6I CTCTTC 2 cut(s) 368, 527
BstACI GRCGYC 1 cut(s) 741
BstC8I GCNNGC 2 cut(s) 90, 881
BstDEI CTNAG 2 cut(s) 326, 702
BstDSI CCRYGG 1 cut(s) 108
BstEII GGTNACC 2 cut(s) 537, 730
BstF5I GGATG 2 cut(s) 597, 877
BstKTI GATC 6 cut(s) 253, 553, 577, 597, 623, 937
BstMAI GTCTC 4 cut(s) 241, 473, 574, 821
BstMBI GATC 6 cut(s) 250, 550, 574, 594, 620, 934
BstMWI GCNNNNNNNGC 3 cut(s) 707, 788, 800
BstNI CCWGG 2 cut(s) 49, 203
BstPI GGTNACC 2 cut(s) 537, 730
BstSCI CCNGG 5 cut(s) 47, 201, 757, 921, 922
BstV1I GCAGC 2 cut(s) 601, 840
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 620, 934
BstYI RGATCY 2 cut(s) 620, 934
BsuRI GGCC 4 cut(s) 220, 391, 757, 853
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 2 cut(s) 597, 877
BtsI GCAGTG 2 cut(s) 954, 964
BtsIMutI CAGTG 4 cut(s) 318, 451, 954, 964
Cac8I GCNNGC 2 cut(s) 90, 881
CaiI CAGNNNCTG 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 219, 349, 852
Cfr9I CCCGGG 1 cut(s) 922
CseI GACGC 1 cut(s) 730
Csp6I GTAC 1 cut(s) 423
CviAII CATG 5 cut(s) 109, 193, 812, 898, 910
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 2 cut(s) 326, 702
DpnI GATC 6 cut(s) 252, 552, 576, 596, 622, 936
DpnII GATC 6 cut(s) 250, 550, 574, 594, 620, 934
EaeI YGGCCR 1 cut(s) 755
Eam1104I CTCTTC 2 cut(s) 368, 527
EarI CTCTTC 2 cut(s) 368, 527
Ecl136II GAGCTC 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 391
Eco24I GRGCYC 2 cut(s) 314, 347
Eco31I GGTCTC 3 cut(s) 241, 473, 821
Eco32I GATATC 1 cut(s) 767
Eco47I GGWCC 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 922
Eco91I GGTNACC 2 cut(s) 537, 730
EcoICRI GAGCTC 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 219
EcoO65I GGTNACC 2 cut(s) 537, 730
EcoRII CCWGG 2 cut(s) 47, 201
EcoRV GATATC 1 cut(s) 767
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 314, 347
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 5 cut(s) 112, 196, 815, 901, 913
FaiI YATR 7 cut(s) 110, 194, 506, 657, 813, 899, 911
FaqI GGGAC 1 cut(s) 636
FatI CATG 5 cut(s) 108, 192, 811, 897, 909
FauI CCCGC 1 cut(s) 79
FbaI TGATCA 1 cut(s) 594
Fnu4HI GCNGC 5 cut(s) 615, 711, 792, 809, 829
FokI GGATG 2 cut(s) 604, 884
FriOI GRGCYC 2 cut(s) 314, 347
Fsp4HI GCNGC 5 cut(s) 615, 711, 792, 809, 829
FspBI CTAG 1 cut(s) 387
GluI GCNGC 5 cut(s) 615, 711, 792, 809, 829
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 4 cut(s) 220, 391, 757, 853
HapII CCGG 3 cut(s) 542, 758, 923
HgaI GACGC 1 cut(s) 730
Hin1I GRCGYC 1 cut(s) 741
Hin1II CATG 5 cut(s) 112, 196, 815, 901, 913
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 5 cut(s) 152, 334, 376, 545, 608
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 3 cut(s) 542, 758, 923
HphI GGTGA 2 cut(s) 245, 742
Hpy166II GTNNAC 1 cut(s) 400
Hpy188III TCNNGA 5 cut(s) 121, 526, 598, 624, 938
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 1 cut(s) 514
HpyAV CCTTC 5 cut(s) 118, 498, 760, 793, 861
HpyCH4III ACNGT 3 cut(s) 322, 427, 863
HpyCH4V TGCA 1 cut(s) 617
HpyF10VI GCNNNNNNNGC 3 cut(s) 707, 788, 800
HpyF3I CTNAG 2 cut(s) 326, 702
Hsp92I GRCGYC 1 cut(s) 741
Hsp92II CATG 5 cut(s) 112, 196, 815, 901, 913
Ksp22I TGATCA 1 cut(s) 594
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 6 cut(s) 250, 550, 574, 594, 620, 934
LguI GCTCTTC 1 cut(s) 368
Lsp1109I GCAGC 2 cut(s) 601, 840
LweI GCATC 2 cut(s) 294, 722
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 2 cut(s) 537, 730
MalI GATC 6 cut(s) 252, 552, 576, 596, 622, 936
MboI GATC 6 cut(s) 250, 550, 574, 594, 620, 934
MboII GAAGA 9 cut(s) 35, 36, 45, 114, 355, 474, 483, 541, 544
MflI RGATCY 2 cut(s) 620, 934
MhlI GDGCHC 3 cut(s) 314, 347, 784
MluCI AATT 2 cut(s) 658, 941
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 180
MseI TTAA 1 cut(s) 399
MspI CCGG 3 cut(s) 542, 758, 923
MspR9I CCNGG 5 cut(s) 49, 203, 759, 923, 924
MvaI CCWGG 2 cut(s) 49, 203
MwoI GCNNNNNNNGC 3 cut(s) 707, 788, 800
NciI CCSGG 3 cut(s) 759, 923, 924
NcoI CCATGG 1 cut(s) 108
NdeII GATC 6 cut(s) 250, 550, 574, 594, 620, 934
NlaIII CATG 5 cut(s) 112, 196, 815, 901, 913
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 730
PceI AGGCCT 1 cut(s) 391
PciSI GCTCTTC 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 691
PfeI GAWTC 4 cut(s) 334, 376, 545, 608
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 5 cut(s) 616, 712, 793, 810, 830
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 47, 201
PspEI GGTNACC 2 cut(s) 537, 730
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 2 cut(s) 47, 201
PspPI GGNCC 3 cut(s) 219, 349, 852
PstNI CAGNNNCTG 1 cut(s) 320
PsuI RGATCY 2 cut(s) 620, 934
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
SacI GAGCTC 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 368
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 5 cut(s) 615, 711, 792, 809, 829
Sau3AI GATC 6 cut(s) 250, 550, 574, 594, 620, 934
Sau96I GGNCC 3 cut(s) 219, 349, 852
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 5 cut(s) 49, 203, 759, 923, 924
SduI GDGCHC 3 cut(s) 314, 347, 784
SetI ASST 8 cut(s) 120, 138, 301, 332, 347, 363, 539, 837
SfaNI GCATC 2 cut(s) 294, 722
SinI GGWCC 1 cut(s) 349
SmaI CCCGGG 1 cut(s) 924
SmlI CTYRAG 2 cut(s) 294, 818
SmoI CTYRAG 2 cut(s) 294, 818
Sse9I AATT 2 cut(s) 658, 941
SseBI AGGCCT 1 cut(s) 391
SsiI CCGC 6 cut(s) 72, 589, 711, 791, 803, 808
SspI AATATT 2 cut(s) 644, 724
SspMI CTAG 1 cut(s) 387
SstI GAGCTC 1 cut(s) 347
StuI AGGCCT 1 cut(s) 391
StyD4I CCNGG 5 cut(s) 47, 201, 757, 921, 922
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 322, 427, 863
TaqI TCGA 3 cut(s) 685, 694, 918
TasI AATT 2 cut(s) 658, 941
TatI WGTACW 1 cut(s) 422
TauI GCSGC 3 cut(s) 713, 794, 811
TfiI GAWTC 4 cut(s) 334, 376, 545, 608
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 4 cut(s) 325, 451, 954, 964
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 2 cut(s) 614, 828
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 2 cut(s) 680, 886
TspMI CCCGGG 1 cut(s) 922
TspRI CASTG 4 cut(s) 325, 451, 954, 964
VpaK11BI GGWCC 1 cut(s) 349
XmaI CCCGGG 1 cut(s) 922
XspI CTAG 1 cut(s) 387
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.