Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000739

Physical Location & Seq

Genomic Coordinates Forward (+)

6768749 .. 6770262

Gene Structure 1514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTTGTCATCAAATGGTAGTGACCAAACCAACTACAACACAACCGGTACTTCATCCAGGTCGTCCTCCTCATCCCCATCACCAGTTTCACAACCCTCCTCCTTCCAAACCCCACAAAGAACCATGGAAGAGGTTTGGAAAGACATCAATCTCGCCTCTCTCACTGAATCCACCACCCAAATCAGATCCTCCTCCTCCTCCTCACCGCTCCTTCACGTTAACCTCCCAAATGGGACCCACCGCCACCACCCAAACTGCAGAAATATGACCCTTCAAGAATTCCTTGCCAAACCCTTTGCCCATGACTCACCAGCTGCGGCCACCGCCTTGGTATCCTCCGCTGTCAGCCCTCCCTCTCCTCTTCCTTCATCCTCCCTCAGGCCTCCGAGGTCCGGCTTCATTGATCATCATCAGCTAAACCCTAATAACCTTTCTAGCAGTGTTTCTAACTCTTTCAGTGGTTGCCCATTTGAGAGCTTGGCTGCTTCCTCCTCCGGCTTGCCTTCTTTTGGGAATAGATCGTTCACTGAATCTGATCACAGCAATTCCGGTGGAGATGGAAGACATAAGCGGATGATCAAGAACCGAGAGTCTGCTGCTCGATCTAGGGCAAGAAAGCAGGCTTACACAAATGAGTTGGAGCTGAAAGTTGCACTCTTGATGGAAGAGAATGCAAGGCTCAAAAGACAGCAAGAACATGTGAGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

237

Amino Acids

25.62

Weight (kDa)

9.74

Isoelectric Point (pI)

76.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	188 - 232	4.2e-12	bZIP transcription factor
bZIP_2	PF07716	188 - 234	1.2e-10	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35900 AT4G35900
fragaria_vesca	FvH4_1g11270 FvH4_1g11270 FvH4_2g38080 FvH4_2g38080
malus_domestica	MD02G1125100.v1.1 MD15G1008300.v1.1 MD15G1240800.v1.1
prunus_persica	Prupe.1G361100_v2.0.a1 Prupe.7G173300_v2.0.a1
pyrus_communis	pycom02g09770 pycom08g00780 pycom15g00670 pycom15g21240
rosa_chinensis	RchiOBHm_Chr2g0098731 RchiOBHm_Chr5g0020811 RchiOBHm_Chr5g0069801 RchiOBHm_Chr6g0303481
rosa_laevigata	RLG00000001084 RLG00000001969 RLG00000004672 RLG00000011081 RLG00000015050 RLG00000015656 RLG00000016824 RLG00000024869 RLG00000030190 RLG00000033969 RLG00000035356
rosa_multiflora	Rmu_sc0002776.1_g000024 Rmu_ssc0000114.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107580 Rroxscaffold_2G00143780 Rroxscaffold_7G00164710 Rroxscaffold_7G00172730
rosa_rugosa	Rorug02G0074200 Rorug06G0321600 Rorug06G0321700
rosa_samantha	Rh1AG062500 Rh1BG080000 Rh1DG103800 Rh2AG122100 Rh2BG125600 Rh2CG116700 Rh2CG126700 Rh2CG345200 Rh2DG127700 Rh3DG072100 Rh5CG499500 Rh6AG436100 Rh6BG117000 Rh6BG117100 Rh6BG117200 Rh6BG467400 Rh6CG115500 Rh6CG115600 Rh6CG198000 Rh6CG448100 Rh6DG104000 Rh6DG434700 Rh7AG017700 Rh7AG193200 Rh7AG263200 Rh7BG017300 Rh7BG449800 Rh7DG018000 Rh7DG269900
rosa_wichuraiana	Rw0G004200 Rw5G015480 Rw6G037740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	208
AciI	CCGC	6 cut(s)	206, 241, 317, 324, 339, 571
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	3 cut(s)	378, 392, 509
AflIII	ACRYGT	1 cut(s)	697
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	4 cut(s)	314, 415, 477, 643
AluI	AGCT	4 cut(s)	314, 415, 477, 643
AlwI	GGATC	1 cut(s)	180
AoxI	GGCC	2 cut(s)	318, 380
ApeKI	GCWGC	3 cut(s)	314, 482, 596
ApoI	RAATTY	1 cut(s)	278
AsiGI	ACCGGT	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	234, 390
AsuHPI	GGTGA	3 cut(s)	72, 195, 300
AvaII	GGWCC	2 cut(s)	234, 390
AxyI	CCTNAGG	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	568
BbvI	GCAGC	3 cut(s)	301, 469, 583
BccI	CCATC	3 cut(s)	85, 551, 655
BciT130I	CCWGG	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	343
BclI	TGATCA	3 cut(s)	403, 535, 576
BfaI	CTAG	2 cut(s)	435, 606
BfmI	CTRYAG	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	4 cut(s)	315, 318, 483, 597
BlsI	GCNGC	4 cut(s)	316, 319, 484, 598
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	234, 390
BmgT120I	GGNCC	2 cut(s)	234, 390
BmiI	GGNNCC	2 cut(s)	235, 236
BmrFI	CCNGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	568
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	123, 327, 386
BsaWI	WCCGGW	2 cut(s)	44, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 392, 509
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	3 cut(s)	123, 327, 386
BseGI	GGATG	4 cut(s)	53, 71, 368, 579
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	3 cut(s)	378, 392, 509
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	8 cut(s)	58, 88, 181, 184, 187, 190, 348, 481
BseXI	GCAGC	3 cut(s)	301, 469, 583
BshFI	GGCC	2 cut(s)	320, 382
BshTI	ACCGGT	1 cut(s)	44
BsiSI	CCGG	4 cut(s)	45, 393, 495, 549
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	378, 392, 509
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	2 cut(s)	320, 382
Bsp143I	GATC	6 cut(s)	185, 403, 518, 535, 576, 602
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	6 cut(s)	206, 241, 317, 324, 339, 571
BspANI	GGCC	2 cut(s)	320, 382
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	235, 236
BspMAI	CTGCAG	1 cut(s)	260
BspPI	GGATC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	123, 327, 386
BssMI	GATC	6 cut(s)	185, 403, 518, 535, 576, 602
BssT1I	CCWWGG	2 cut(s)	123, 327
Bst2UI	CCWGG	1 cut(s)	58
Bst6I	CTCTTC	3 cut(s)	123, 366, 660
BstC8I	GCNNGC	2 cut(s)	500, 621
BstDEI	CTNAG	1 cut(s)	377
BstDSI	CCRYGG	1 cut(s)	123
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	4 cut(s)	53, 71, 368, 579
BstKTI	GATC	6 cut(s)	188, 406, 521, 538, 579, 605
BstMBI	GATC	6 cut(s)	185, 403, 518, 535, 576, 602
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	301, 469, 583
BstV2I	GAAGAC	1 cut(s)	568
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	377
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	320, 382
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	4 cut(s)	53, 71, 368, 579
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	4 cut(s)	162, 445, 463, 525
Cac8I	GCNNGC	2 cut(s)	500, 621
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	234, 390
Csp6I	GTAC	1 cut(s)	48
CspAI	ACCGGT	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviAII	CATG	3 cut(s)	124, 302, 698
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	6 cut(s)	187, 405, 520, 537, 578, 604
DpnII	GATC	6 cut(s)	185, 403, 518, 535, 576, 602
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	3 cut(s)	123, 366, 660
EarI	CTCTTC	3 cut(s)	123, 366, 660
Eco130I	CCWWGG	2 cut(s)	123, 327
Eco147I	AGGCCT	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	234, 390
Eco81I	CCTNAGG	1 cut(s)	377
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	2 cut(s)	123, 327
ErhI	CCWWGG	2 cut(s)	123, 327
FaeI	CATG	3 cut(s)	127, 305, 701
FaiI	YATR	6 cut(s)	125, 266, 303, 567, 699, 709
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	3 cut(s)	123, 301, 697
FbaI	TGATCA	3 cut(s)	403, 535, 576
Fnu4HI	GCNGC	4 cut(s)	315, 318, 483, 597
FokI	GGATG	4 cut(s)	40, 58, 355, 586
Fsp4HI	GCNGC	4 cut(s)	315, 318, 483, 597
FspBI	CTAG	2 cut(s)	435, 606
GluI	GCNGC	4 cut(s)	315, 318, 483, 597
HaeIII	GGCC	2 cut(s)	320, 382
HapII	CCGG	4 cut(s)	45, 393, 495, 549
Hin1II	CATG	3 cut(s)	127, 305, 701
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	4 cut(s)	167, 305, 530, 590
HpaI	GTTAAC	1 cut(s)	220
HpaII	CCGG	4 cut(s)	45, 393, 495, 549
HphI	GGTGA	3 cut(s)	72, 195, 300
Hpy166II	GTNNAC	2 cut(s)	220, 525
Hpy188I	TCNGA	3 cut(s)	185, 387, 535
Hpy188III	TCNNGA	3 cut(s)	275, 580, 658
Hpy8I	GTNNAC	2 cut(s)	220, 525
HpyAV	CCTTC	5 cut(s)	112, 221, 281, 375, 513
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	258, 653, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	127, 305, 701
KflI	GGGWCCC	1 cut(s)	234
Ksp22I	TGATCA	3 cut(s)	403, 535, 576
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	6 cut(s)	185, 403, 518, 535, 576, 602
LmnI	GCTCC	2 cut(s)	213, 640
Lsp1109I	GCAGC	3 cut(s)	301, 469, 583
MaeI	CTAG	2 cut(s)	435, 606
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	6 cut(s)	187, 405, 520, 537, 578, 604
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	6 cut(s)	185, 403, 518, 535, 576, 602
MboII	GAAGA	4 cut(s)	140, 353, 573, 677
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	2 cut(s)	278, 544
MlyI	GAGTC	2 cut(s)	299, 599
MmeI	TCCRAC	1 cut(s)	618
MseI	TTAA	1 cut(s)	219
MspA1I	CMGCKG	2 cut(s)	314, 341
MspI	CCGG	4 cut(s)	45, 393, 495, 549
MspR9I	CCNGG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	323
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	6 cut(s)	185, 403, 518, 535, 576, 602
NlaIII	CATG	3 cut(s)	127, 305, 701
NlaIV	GGNNCC	2 cut(s)	235, 236
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	701
PceI	AGGCCT	1 cut(s)	382
PciI	ACATGT	1 cut(s)	697
PctI	GAATGC	1 cut(s)	676
PfeI	GAWTC	2 cut(s)	167, 530
PinAI	ACCGGT	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	316, 319, 484, 598
PleI	GAGTC	2 cut(s)	299, 598
PpsI	GAGTC	2 cut(s)	299, 598
PpuMI	RGGWCCY	1 cut(s)	234
PscI	ACATGT	1 cut(s)	697
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	235, 236
PspPI	GGNCC	2 cut(s)	234, 390
PspPPI	RGGWCCY	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	4 cut(s)	315, 318, 483, 597
Sau3AI	GATC	6 cut(s)	185, 403, 518, 535, 576, 602
Sau96I	GGNCC	2 cut(s)	234, 390
SchI	GAGTC	2 cut(s)	299, 599
ScrFI	CCNGG	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	2 cut(s)	234, 390
Sse9I	AATT	2 cut(s)	278, 544
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	6 cut(s)	206, 241, 317, 324, 339, 571
SspMI	CTAG	2 cut(s)	435, 606
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	2 cut(s)	123, 327
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	601
TasI	AATT	2 cut(s)	278, 544
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	167, 530
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	4 cut(s)	169, 445, 463, 532
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	314, 482, 596
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	42, 357, 388
TspRI	CASTG	4 cut(s)	169, 445, 463, 532
VpaK11BI	GGWCC	2 cut(s)	234, 390
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	1 cut(s)	701
XspI	CTAG	2 cut(s)	435, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.