Rorug05G0370300

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013779
Physical Location & Seq
Reverse (-)
49747278 .. 49748723
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0370300.1

Sequence Viewer

Length: 393 bp
ATGTCATCGCTGGGGTGGGAAAGAGAAGAGGGTGGATTCAAGATTGTGGTGGACTTCGGGGGCAGGGAAATAGCCGCCTCTGTTGTAGATAGTGACAATCCAATTGGTCATATAATTTTCGCAACCATAGGAGGCAAAAATGGAGAGCCCAAACAGACCATTAGTTATATAGCAGAACCTGTTCTGGGAACTGGATCATTTGAAATTGTTTTCAGGCCAGAGATTGCAGCCAAAAGCATGGAAAAAGGTGTAGCTAAAGCTGGTCCAGCAAATGAAAACTGTAGTCAAAATACTTTCAGTAGTGTTACCGGGATTTCATGGACTGGTGATAGGTCATCTGGCTTTGGATCTGTTGTTGTGGTATATTTCATACCTTTCCTGTTATCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

130

Amino Acids

13.78

Weight (kDa)

5.11

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AclWI GGATC 2 cut(s) 202, 355
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 2 cut(s) 40, 203
AluBI AGCT 2 cut(s) 254, 260
AluI AGCT 2 cut(s) 254, 260
AlwI GGATC 2 cut(s) 202, 355
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 239
BcnI CCSGG 1 cut(s) 310
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 280
BisI GCNGC 2 cut(s) 75, 228
BlsI GCNGC 2 cut(s) 76, 229
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 2 cut(s) 196, 328
BseLI CCNNNNNNNGG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 196, 328
BseXI GCAGC 1 cut(s) 239
BseYI CCCAGC 1 cut(s) 10
BshFI GGCC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 185
BsnI GGCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 194, 347
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 217
BspPI GGATC 2 cut(s) 202, 355
BsrI ACTGG 2 cut(s) 196, 328
BssMI GATC 2 cut(s) 194, 347
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 21
BstKTI GATC 2 cut(s) 197, 350
BstMBI GATC 2 cut(s) 194, 347
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 347
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 1 cut(s) 217
CaiI CAGNNNCTG 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 263
CviAII CATG 2 cut(s) 238, 318
CviJI RGCY 7 cut(s) 74, 148, 217, 230, 254, 260, 342
CviKI_1 RGCY 7 cut(s) 74, 148, 217, 230, 254, 260, 342
DpnI GATC 2 cut(s) 196, 349
DpnII GATC 2 cut(s) 194, 347
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 2 cut(s) 241, 321
FaiI YATR 9 cut(s) 111, 113, 128, 168, 170, 239, 319, 364, 371
FatI CATG 2 cut(s) 237, 317
Fnu4HI GCNGC 2 cut(s) 75, 228
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 75, 228
FspBI CTAG 1 cut(s) 387
GluI GCNGC 2 cut(s) 75, 228
GsaI CCCAGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 217
HapII CCGG 1 cut(s) 309
Hin1II CATG 2 cut(s) 241, 321
HinfI GANTC 1 cut(s) 36
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 40, 387
Hpy8I GTNNAC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
Hsp92II CATG 2 cut(s) 241, 321
Kzo9I GATC 2 cut(s) 194, 347
Lsp1109I GCAGC 1 cut(s) 239
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 2 cut(s) 92, 304
MalI GATC 2 cut(s) 196, 349
MboI GATC 2 cut(s) 194, 347
MboII GAAGA 1 cut(s) 38
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 3 cut(s) 102, 114, 204
MnlI CCTC 3 cut(s) 22, 88, 125
MroXI GAANNNNTTC 1 cut(s) 180
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 310
NdeII GATC 2 cut(s) 194, 347
NlaIII CATG 2 cut(s) 241, 321
NmuCI GTSAC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 2 cut(s) 76, 229
PspFI CCCAGC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 263
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 347
SatI GCNGC 2 cut(s) 75, 228
Sau3AI GATC 2 cut(s) 194, 347
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 1 cut(s) 150
SetI ASST 6 cut(s) 181, 250, 256, 262, 335, 376
SfcI CTRYAG 1 cut(s) 280
SinI GGWCC 1 cut(s) 263
Sse9I AATT 3 cut(s) 102, 114, 204
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 281
TasI AATT 3 cut(s) 102, 114, 204
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 36
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 288, 306, 358
VpaK11BI GGWCC 1 cut(s) 263
XbaI TCTAGA 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.