Rmu_sc0000470.1_g000009

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000470.1
OG0013779
Physical Location & Seq
Reverse (-)
40439 .. 42885
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000470.1_g000009.1.cds

Sequence Viewer

Length: 435 bp
atgttagcaaaacaagcttggcgggtggtcaataaccctcaatctttgattgctcgattgtttaaagctaagtactttccggatgactcattttggactgcttcttctcatgcttctccttcttattcttggaggagtattttctccacaagggacttattaagacaagggatgttctggcagattggtgatggtgcaatagtgaatatatggacatattcatggatttctggggtgccagattttcgcccttgtggaggtaatttggctacaactgatctcaatttggtgacgactcgatctagcgcatttttcattgtttgtgatggggctcctcggggatttgacgtggctgatagtgatgccaagtgggcggaaattggtgctctaaagatggtgtcgttctatactggctgcgagatcaaagtgttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

144

Amino Acids

16.14

Weight (kDa)

8.5

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 2 cut(s) 22, 374
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 257
AjiI CACGTC 1 cut(s) 349
AluBI AGCT 2 cut(s) 17, 68
AluI AGCT 2 cut(s) 17, 68
Alw21I GWGCWC 1 cut(s) 388
Ama87I CYCGRG 1 cut(s) 336
Aor13HI TCCGGA 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 200, 301
AvaI CYCGRG 1 cut(s) 336
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 401
BccI CCATC 3 cut(s) 185, 320, 388
BfaI CTAG 2 cut(s) 303, 433
BglI GCCNNNNNGGC 1 cut(s) 371
BisI GCNGC 1 cut(s) 415
BlsI GCNGC 1 cut(s) 416
BmcAI AGTACT 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 336
BmgBI CACGTC 1 cut(s) 349
BmiI GGNNCC 2 cut(s) 237, 333
BmsI GCATC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 415
BseAI TCCGGA 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 2 cut(s) 88, 177
BseLI CCNNNNNNNGG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 2 cut(s) 148, 324
BseXI GCAGC 1 cut(s) 401
BshNI GGYRCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 2 cut(s) 334, 388
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 3 cut(s) 277, 299, 420
BspACI CCGC 2 cut(s) 22, 374
BspEI TCCGGA 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 237, 333
BspT107I GGYRCC 1 cut(s) 235
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 3 cut(s) 277, 299, 420
BstDEI CTNAG 1 cut(s) 69
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 2 cut(s) 88, 177
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 3 cut(s) 280, 302, 423
BstMBI GATC 3 cut(s) 277, 299, 420
BstMWI GCNNNNNNNGC 2 cut(s) 14, 371
BstV1I GCAGC 1 cut(s) 401
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 2 cut(s) 88, 177
CfoI GCGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 73
CviAII CATG 2 cut(s) 110, 222
CviJI RGCY 6 cut(s) 17, 68, 269, 332, 353, 414
CviKI_1 RGCY 6 cut(s) 17, 68, 269, 332, 353, 414
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 69
DpnI GATC 3 cut(s) 279, 301, 422
DpnII GATC 3 cut(s) 277, 299, 420
DraI TTTAAA 1 cut(s) 64
EciI GGCGGA 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 336
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 334
FaeI CATG 2 cut(s) 113, 225
FaiI YATR 6 cut(s) 111, 209, 211, 217, 223, 408
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 109, 221
FauI CCCGC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 415
FokI GGATG 2 cut(s) 95, 184
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 415
FspBI CTAG 2 cut(s) 303, 433
GlaI GCGC 1 cut(s) 307
GluI GCNGC 1 cut(s) 415
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 113, 225
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 86, 295
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 200, 301
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 371
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 2 cut(s) 113, 225
HspAI GCGC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 79
Kzo9I GATC 3 cut(s) 277, 299, 420
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 5 cut(s) 93, 163, 216, 252, 396
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 1 cut(s) 352
MaeI CTAG 2 cut(s) 303, 433
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 289
MalI GATC 3 cut(s) 279, 301, 422
MboI GATC 3 cut(s) 277, 299, 420
MboII GAAGA 1 cut(s) 96
MhlI GDGCHC 2 cut(s) 334, 388
MluCI AATT 3 cut(s) 262, 283, 378
MlyI GAGTC 2 cut(s) 80, 289
MnlI CCTC 4 cut(s) 48, 126, 251, 345
MroI TCCGGA 1 cut(s) 79
MseI TTAA 2 cut(s) 63, 161
MslI CAYNNNNRTG 1 cut(s) 220
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 14, 371
NdeII GATC 3 cut(s) 277, 299, 420
NlaIII CATG 2 cut(s) 113, 225
NlaIV GGNNCC 2 cut(s) 237, 333
NmuCI GTSAC 1 cut(s) 289
PkrI GCNGC 1 cut(s) 416
PleI GAGTC 2 cut(s) 80, 289
PpsI GAGTC 2 cut(s) 80, 289
PspN4I GGNNCC 2 cut(s) 237, 333
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 2 cut(s) 63, 161
SatI GCNGC 1 cut(s) 415
Sau3AI GATC 3 cut(s) 277, 299, 420
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 2 cut(s) 80, 289
SduI GDGCHC 2 cut(s) 334, 388
SetI ASST 4 cut(s) 19, 70, 262, 351
SfaNI GCATC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 3 cut(s) 262, 283, 378
SsiI CCGC 2 cut(s) 22, 374
SspMI CTAG 2 cut(s) 303, 433
TaiI ACGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 55, 298
TasI AATT 3 cut(s) 262, 283, 378
TatI WGTACW 1 cut(s) 72
Tru1I TTAA 2 cut(s) 63, 161
Tru9I TTAA 2 cut(s) 63, 161
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 414
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 210, 304
XagI CCTNNNNNAGG 1 cut(s) 255
XspI CTAG 2 cut(s) 303, 433
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.