Rmu_sc0001694.1_g000026

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001694.1
OG0013779
Physical Location & Seq
Forward (+)
162164 .. 162556
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001694.1_g000026.1.cds

Sequence Viewer

Length: 393 bp
atgcttgcaaaacaagcttggaggatagtatgtaatccggattcacttattgctagagtttacaaggcaaaatactttccagatggttctttttgggatgctccgagccatagtgccccatcttattcttggagaagtatttttgggacacgagacttactgagattggggtcgtattggcagattggtaatgggagctctgttcgtatttggcatgatgcttgggtgccaaatttaccaaacttttctcctacttcgggtctatcattgcataatgaaagcatgagggtcatggaactgatcagtgtaccaggattctgggatgagaaaaaggtacattcaatatttaatgtggtggaggcagaagctattttagctatacctttgtcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

130

Amino Acids

14.74

Weight (kDa)

7.93

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 37
AcsI RAATTY 1 cut(s) 232
AfaI GTAC 2 cut(s) 309, 336
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 342
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 4 cut(s) 17, 198, 368, 377
AluI AGCT 4 cut(s) 17, 198, 368, 377
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 37
ApoI RAATTY 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 200
BauI CACGAG 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 200
BccI CCATC 2 cut(s) 77, 127
BciT130I CCWGG 1 cut(s) 312
BclI TGATCA 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 88, 208
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 266
BseAI TCCGGA 1 cut(s) 37
BseBI CCWGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 103, 328
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 118, 200
Bsp13I TCCGGA 1 cut(s) 37
Bsp143I GATC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 266
BssMI GATC 1 cut(s) 300
BssSI CACGAG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 103, 328
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 2 cut(s) 14, 374
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 103, 328
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 2 cut(s) 308, 335
CviAII CATG 3 cut(s) 215, 283, 292
CviJI RGCY 5 cut(s) 17, 108, 198, 368, 377
CviKI_1 RGCY 5 cut(s) 17, 108, 198, 368, 377
CviQI GTAC 2 cut(s) 308, 335
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 3 cut(s) 218, 286, 295
FaiI YATR 7 cut(s) 31, 111, 216, 273, 284, 293, 380
FaqI GGGAC 1 cut(s) 160
FatI CATG 3 cut(s) 214, 282, 291
FbaI TGATCA 1 cut(s) 300
FokI GGATG 2 cut(s) 110, 335
FriOI GRGCYC 1 cut(s) 200
FspBI CTAG 1 cut(s) 54
HapII CCGG 1 cut(s) 38
Hin1II CATG 3 cut(s) 218, 286, 295
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 41, 315
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 61, 308
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 3 cut(s) 38, 80, 390
Hpy8I GTNNAC 2 cut(s) 61, 308
HpyCH4V TGCA 2 cut(s) 8, 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 374
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 3 cut(s) 218, 286, 295
Kpn2I TCCGGA 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 1 cut(s) 300
LmnI GCTCC 2 cut(s) 106, 195
LpnPI CCDG 5 cut(s) 51, 93, 297, 304, 324
LweI GCATC 2 cut(s) 88, 208
MaeI CTAG 1 cut(s) 54
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MhlI GDGCHC 2 cut(s) 118, 200
MluCI AATT 1 cut(s) 232
MnlI CCTC 3 cut(s) 15, 279, 352
MroI TCCGGA 1 cut(s) 37
MseI TTAA 1 cut(s) 348
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 14, 374
NdeII GATC 1 cut(s) 300
NlaIII CATG 3 cut(s) 218, 286, 295
NlaIV GGNNCC 1 cut(s) 228
PfeI GAWTC 2 cut(s) 41, 315
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 228
RsaI GTAC 2 cut(s) 309, 336
RsaNI GTAC 2 cut(s) 308, 335
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 348
Sau3AI GATC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 2 cut(s) 118, 200
SetI ASST 6 cut(s) 19, 200, 336, 370, 379, 385
SfaNI GCATC 2 cut(s) 88, 208
Sse9I AATT 1 cut(s) 232
SspI AATATT 1 cut(s) 345
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 310
TasI AATT 1 cut(s) 232
TfiI GAWTC 2 cut(s) 41, 315
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 1 cut(s) 310
XapI RAATTY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.