Rmu_sc0012535.1_g000007

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012535.1
OG0013779
Physical Location & Seq
Forward (+)
20543 .. 20962
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012535.1_g000007.1.cds

Sequence Viewer

Length: 420 bp
atgcttgccaagcaagcttggagggtgatttcaaaccctgagtctttggtggcacagttgtataaagcacgttattatccatatggcaatttttggaatgctgatgtgtatgctacaccttcttactcttggcgtagtatatttgctacaagggagtttattcaaactggtgctttttggcaggtggggactggacataatgtttcggtatggaacgatactaggatacccaagctaccttctcataaacctcaggttgctttagtgagtcaaccatatgtacagacggtgaatgaactgattatacctcccaataattgggatgagcacaaggtacgctccatctttgttcttgatgaggctgcagctattctttctattcccttgagtactaggcaactcgaagatagactgacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

139

Amino Acids

16.01

Weight (kDa)

8.96

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 172
Acc36I ACCTGC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 318
AfaI GTAC 3 cut(s) 282, 336, 391
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 2 cut(s) 33, 164
AluBI AGCT 3 cut(s) 17, 235, 368
AluI AGCT 3 cut(s) 17, 235, 368
Alw21I GWGCWC 1 cut(s) 330
ApeKI GCWGC 2 cut(s) 362, 365
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AsuHPI GGTGA 2 cut(s) 37, 301
AxyI CCTNAGG 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 349, 377
BccI CCATC 1 cut(s) 350
BciVI GTATCC 1 cut(s) 219
BfaI CTAG 2 cut(s) 222, 393
BfmI CTRYAG 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 172
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 2 cut(s) 363, 366
BlsI GCNGC 2 cut(s) 364, 367
BmcAI AGTACT 1 cut(s) 391
BpuEI CTTGAG 1 cut(s) 406
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse1I ACTGG 2 cut(s) 172, 196
Bse21I CCTNAGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 30, 266
BseNI ACTGG 2 cut(s) 172, 196
BseXI GCAGC 2 cut(s) 349, 377
BsiHKAI GWGCWC 1 cut(s) 330
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 330
Bsp1407I TGTACA 1 cut(s) 280
BspCNI CTCAG 2 cut(s) 31, 265
BspMAI CTGCAG 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 280
BsrI ACTGG 2 cut(s) 172, 196
Bst4CI ACNGT 2 cut(s) 57, 289
BstAUI TGTACA 1 cut(s) 280
BstC8I GCNNGC 2 cut(s) 6, 15
BstDEI CTNAG 2 cut(s) 39, 252
BstF5I GGATG 1 cut(s) 328
BstMWI GCNNNNNNNGC 2 cut(s) 10, 14
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 2 cut(s) 349, 377
Bsu36I CCTNAGG 1 cut(s) 252
BsuI GTATCC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 6, 15
Csp6I GTAC 3 cut(s) 281, 335, 390
CviJI RGCY 4 cut(s) 17, 235, 362, 368
CviKI_1 RGCY 4 cut(s) 17, 235, 362, 368
CviQI GTAC 3 cut(s) 281, 335, 390
DdeI CTNAG 2 cut(s) 39, 252
Eco81I CCTNAGG 1 cut(s) 252
FaqI GGGAC 1 cut(s) 202
FauNDI CATATG 2 cut(s) 82, 277
Fnu4HI GCNGC 2 cut(s) 363, 366
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 363, 366
FspBI CTAG 2 cut(s) 222, 393
GluI GCNGC 2 cut(s) 363, 366
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 41, 268
HphI GGTGA 2 cut(s) 37, 301
Hpy166II GTNNAC 1 cut(s) 272
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 129, 249
HpyCH4III ACNGT 2 cut(s) 57, 289
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 14
HpyF3I CTNAG 2 cut(s) 39, 252
HpySE526I ACGT 1 cut(s) 70
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 5 cut(s) 51, 153, 167, 177, 239
Lsp1109I GCAGC 2 cut(s) 349, 377
MaeI CTAG 2 cut(s) 222, 393
MaeII ACGT 1 cut(s) 70
MboII GAAGA 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 2 cut(s) 88, 316
MlyI GAGTC 2 cut(s) 50, 277
MnlI CCTC 4 cut(s) 15, 261, 318, 352
Mva1269I GAATGC 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 10, 14
NdeI CATATG 2 cut(s) 82, 277
PaqCI CACCTGC 1 cut(s) 172
PctI GAATGC 1 cut(s) 103
PflMI CCANNNNNTGG 1 cut(s) 318
PkrI GCNGC 2 cut(s) 364, 367
PleI GAGTC 2 cut(s) 49, 276
PpsI GAGTC 2 cut(s) 49, 276
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
PstI CTGCAG 1 cut(s) 367
RsaI GTAC 3 cut(s) 282, 336, 391
RsaNI GTAC 3 cut(s) 281, 335, 390
SatI GCNGC 2 cut(s) 363, 366
ScaI AGTACT 1 cut(s) 391
SchI GAGTC 2 cut(s) 50, 277
SduI GDGCHC 1 cut(s) 330
SfcI CTRYAG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
Sse9I AATT 2 cut(s) 88, 316
SspMI CTAG 2 cut(s) 222, 393
TaaI ACNGT 2 cut(s) 57, 289
TaiI ACGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 402
TasI AATT 2 cut(s) 88, 316
TatI WGTACW 2 cut(s) 280, 389
TseI GCWGC 2 cut(s) 362, 365
TspDTI ATGAA 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 318
XspI CTAG 2 cut(s) 222, 393
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.