Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006059.1

Orthogroup ID

OG0013779

Physical Location & Seq

Genomic Coordinates Forward (+)

144458 .. 150814

Gene Structure 6357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006059.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atgcacaactcgtcgttcgagtggtcgctgggtgggtggtgctgtgaggcacgcgtggttatagggttggcggcgatagagttactcaatcatggagtagtgaactctgctttgcttgcaaaacaagcttggagggtgctttgcaatcctaattttcttattgctcgtatttataaagcgaggtactttccaactgagtccttttggacagtagacctacatccttctccgtcatactcttggagaagtatattctctacaagggagctacttcaacaaagtgcctattggcagattgggaatggcatcaatgacaacatctggtcggattcttggatacctaatttacaaaatggtaagccagatatcaatgaagcggctttggaagaggtctctagggtctgtgatctttttttgagtatgggaatttggaatgtacctctcattaaccgactctttttggttgaagaagttgcagcggctttgagtattccactaagctcaagagatttggcagacagattagtttggaagttggaaaagaatggtaaggtagctcaatcgactacgctggagctcagattgactaagccgaagctcagttcgactttcctctatgcctccaaaatccccaatccactctgcagattccaacacctttgttttttctccgagctcccgtcttgggatggaagtctgggaagcctaccgccggcgacagtatgctcagatcacacctctcaatttcgtgtattctcatcttccggctcatgtcgatatgttgataggatacccagaggcccctctagtaagaacccccttgcatacaaatggtataatgcagaggaggagattctggggaagaaaatgaacgttggagctgacccattcggtgcgcctaaaaaaaattggcattgggaggatggaacttataactatgttgctatggccaagagaagaaaagttgcagcggctttgagtattccactaagctcaagagatttggcagacagattagtttggaagttggaaaagaatgggccctctagtaagaacccccttgcatacaaatggtataatgcagaggaggagattctggggaagaaaatgaacgttggagctgacccattcggtgcgcctaaaaaaaatgggcgtggggaagatggaacttataactctgttgctatggccaagagaagaagtgagaacatcctctgttatttttctctttatgtgacagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

414

Amino Acids

46.7

Weight (kDa)

8.98

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013779)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000036421
rosa_multiflora	Rmu_co8321223.1_g000001 Rmu_sc0000441.1_g000003 Rmu_sc0000470.1_g000009 Rmu_sc0001694.1_g000026 Rmu_sc0006059.1_g000038 Rmu_sc0010720.1_g000005 Rmu_sc0011178.1_g000002 Rmu_sc0012409.1_g000004 Rmu_sc0012535.1_g000007 Rmu_ssc0000467.1_g000043
rosa_rugosa	Rorug02G0074200 Rorug05G0089300 Rorug05G0370300
rosa_samantha	Rh1DG240000 Rh4DG427300 Rh6CG287000 Rh6DG280000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	174, 933, 1173
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	54
AciI	CCGC	5 cut(s)	71, 377, 479, 710, 971
AclI	AACGTT	2 cut(s)	873, 1113
AcoI	YGGCCR	2 cut(s)	948, 1188
AcsI	RAATTY	1 cut(s)	426
AfaI	GTAC	2 cut(s)	185, 438
AfiI	CCNNNNNNNGG	2 cut(s)	685, 712
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	275, 467
Alw21I	GWGCWC	2 cut(s)	579, 678
Alw26I	GTCTC	1 cut(s)	397
AoxI	GGCC	4 cut(s)	799, 948, 1040, 1188
ApaI	GGGCCC	1 cut(s)	1044
ApeKI	GCWGC	2 cut(s)	476, 968
ApoI	RAATTY	1 cut(s)	426
AspLEI	GCGC	2 cut(s)	898, 1138
AspS9I	GGNCC	3 cut(s)	800, 1040, 1041
BaeGI	GKGCMC	1 cut(s)	1044
BalI	TGGCCA	2 cut(s)	950, 1190
BanII	GRGCYC	3 cut(s)	579, 678, 1044
Bbv12I	GWGCWC	2 cut(s)	579, 678
BbvI	GCAGC	2 cut(s)	488, 980
BccI	CCATC	3 cut(s)	683, 917, 1157
BciVI	GTATCC	2 cut(s)	330, 783
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	3 cut(s)	396, 807, 1047
BfmI	CTRYAG	1 cut(s)	643
BfuI	GTATCC	2 cut(s)	330, 783
BisI	GCNGC	6 cut(s)	72, 378, 477, 480, 969, 972
BlsI	GCNGC	6 cut(s)	73, 379, 478, 481, 970, 973
BmgT120I	GGNCC	3 cut(s)	800, 1040, 1041
BmiI	GGNNCC	2 cut(s)	802, 1042
BmsI	GCATC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	593
BpuEI	CTTGAG	2 cut(s)	487, 979
BsaI	GGTCTC	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	2 cut(s)	685, 712
Bse118I	RCCGGY	1 cut(s)	712
BseGI	GGATG	4 cut(s)	220, 694, 928, 1209
BseLI	CCNNNNNNNGG	2 cut(s)	685, 712
BseMII	CTCAG	4 cut(s)	186, 592, 613, 741
BseRI	GAGGAG	4 cut(s)	860, 863, 1100, 1103
BseSI	GKGCMC	1 cut(s)	1044
BseXI	GCAGC	2 cut(s)	488, 980
BseYI	CCCAGC	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	4 cut(s)	801, 950, 1042, 1190
BsiHKAI	GWGCWC	2 cut(s)	579, 678
BsiSI	CCGG	2 cut(s)	713, 765
BslI	CCNNNNNNNGG	2 cut(s)	685, 712
BsmAI	GTCTC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	801, 950, 1042, 1190
Bso31I	GGTCTC	1 cut(s)	397
Bsp120I	GGGCCC	1 cut(s)	1040
Bsp1286I	GDGCHC	3 cut(s)	579, 678, 1044
Bsp143I	GATC	2 cut(s)	406, 730
BspACI	CCGC	5 cut(s)	71, 377, 479, 710, 971
BspANI	GGCC	4 cut(s)	801, 950, 1042, 1190
BspCNI	CTCAG	4 cut(s)	187, 591, 612, 740
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	802, 1042
BspMAI	CTGCAG	1 cut(s)	647
BspTNI	GGTCTC	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	712
BssAI	RCCGGY	1 cut(s)	712
BssMI	GATC	2 cut(s)	406, 730
Bst4CI	ACNGT	2 cut(s)	211, 721
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	3 cut(s)	52, 117, 714
BstDEI	CTNAG	7 cut(s)	195, 497, 578, 588, 599, 727, 989
BstF5I	GGATG	4 cut(s)	220, 694, 928, 1209
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	898, 1138
BstKTI	GATC	2 cut(s)	409, 733
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	2 cut(s)	406, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 125
BstSFI	CTRYAG	1 cut(s)	643
BstSLI	GKGCMC	1 cut(s)	1044
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	488, 980
BsuI	GTATCC	2 cut(s)	330, 783
BsuRI	GGCC	4 cut(s)	801, 950, 1042, 1190
BtsCI	GGATG	4 cut(s)	220, 694, 928, 1209
Cac8I	GCNNGC	3 cut(s)	52, 117, 714
CfoI	GCGC	2 cut(s)	898, 1138
Cfr10I	RCCGGY	1 cut(s)	712
Cfr13I	GGNCC	3 cut(s)	800, 1040, 1041
Csp6I	GTAC	2 cut(s)	184, 437
CviAII	CATG	2 cut(s)	92, 771
CviQI	GTAC	2 cut(s)	184, 437
DdeI	CTNAG	7 cut(s)	195, 497, 578, 588, 599, 727, 989
DpnI	GATC	2 cut(s)	408, 732
DpnII	GATC	2 cut(s)	406, 730
EaeI	YGGCCR	2 cut(s)	948, 1188
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Ecl136II	GAGCTC	2 cut(s)	577, 676
Eco24I	GRGCYC	3 cut(s)	579, 678, 1044
Eco31I	GGTCTC	1 cut(s)	397
Eco32I	GATATC	1 cut(s)	367
Eco53kI	GAGCTC	2 cut(s)	577, 676
EcoICRI	GAGCTC	2 cut(s)	577, 676
EcoO109I	RGGNCCY	2 cut(s)	800, 1041
EcoRV	GATATC	1 cut(s)	367
EcoT38I	GRGCYC	3 cut(s)	579, 678, 1044
FaeI	CATG	2 cut(s)	95, 774
FatI	CATG	2 cut(s)	91, 770
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	6 cut(s)	72, 378, 477, 480, 969, 972
FokI	GGATG	4 cut(s)	207, 701, 935, 1196
FriOI	GRGCYC	3 cut(s)	579, 678, 1044
Fsp4HI	GCNGC	6 cut(s)	72, 378, 477, 480, 969, 972
FspBI	CTAG	3 cut(s)	396, 807, 1047
GlaI	GCGC	2 cut(s)	897, 1137
GluI	GCNGC	6 cut(s)	72, 378, 477, 480, 969, 972
GsaI	CCCAGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	4 cut(s)	801, 950, 1042, 1190
HapII	CCGG	2 cut(s)	713, 765
HhaI	GCGC	2 cut(s)	898, 1138
Hin1II	CATG	2 cut(s)	95, 774
Hin6I	GCGC	2 cut(s)	896, 1136
HinP1I	GCGC	2 cut(s)	896, 1136
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	6 cut(s)	197, 329, 453, 648, 853, 1093
HpaII	CCGG	2 cut(s)	713, 765
Hpy166II	GTNNAC	2 cut(s)	103, 214
Hpy188I	TCNGA	4 cut(s)	328, 581, 673, 730
Hpy188III	TCNNGA	2 cut(s)	504, 996
Hpy8I	GTNNAC	2 cut(s)	103, 214
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	2 cut(s)	211, 721
HpyCH4IV	ACGT	2 cut(s)	873, 1113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 125
HpyF3I	CTNAG	7 cut(s)	195, 497, 578, 588, 599, 727, 989
HpySE526I	ACGT	2 cut(s)	873, 1113
Hsp92II	CATG	2 cut(s)	95, 774
HspAI	GCGC	2 cut(s)	896, 1136
KroI	GCCGGC	1 cut(s)	712
KroNI	GCCGGC	1 cut(s)	714
Kzo9I	GATC	2 cut(s)	406, 730
LmnI	GCTCC	5 cut(s)	265, 574, 681, 878, 1118
Lsp1109I	GCAGC	2 cut(s)	488, 980
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	3 cut(s)	396, 807, 1047
MaeII	ACGT	2 cut(s)	873, 1113
MaeIII	GTNAC	2 cut(s)	81, 1234
MalI	GATC	2 cut(s)	408, 732
MboI	GATC	2 cut(s)	406, 730
MboII	GAAGA	8 cut(s)	398, 479, 753, 874, 969, 1114, 1172, 1209
MhlI	GDGCHC	3 cut(s)	579, 678, 1044
MlsI	TGGCCA	2 cut(s)	950, 1190
MluCI	AATT	5 cut(s)	151, 343, 426, 743, 907
MluI	ACGCGT	1 cut(s)	52
MluNI	TGGCCA	2 cut(s)	950, 1190
MlyI	GAGTC	2 cut(s)	206, 447
MmeI	TCCRAC	7 cut(s)	215, 306, 516, 676, 856, 1008, 1096
Mox20I	TGGCCA	2 cut(s)	950, 1190
MreI	CGCCGGCG	1 cut(s)	712
MroNI	GCCGGC	1 cut(s)	712
MscI	TGGCCA	2 cut(s)	950, 1190
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	2 cut(s)	829, 1069
Msp20I	TGGCCA	2 cut(s)	950, 1190
MspA1I	CMGCKG	2 cut(s)	479, 971
MspI	CCGG	2 cut(s)	713, 765
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	116, 125
NaeI	GCCGGC	1 cut(s)	714
NdeII	GATC	2 cut(s)	406, 730
NgoMIV	GCCGGC	1 cut(s)	712
NlaIII	CATG	2 cut(s)	95, 774
NlaIV	GGNNCC	2 cut(s)	802, 1042
NmuCI	GTSAC	1 cut(s)	1234
PdiI	GCCGGC	1 cut(s)	714
PfeI	GAWTC	4 cut(s)	329, 648, 853, 1093
PkrI	GCNGC	6 cut(s)	73, 379, 478, 481, 970, 973
PleI	GAGTC	2 cut(s)	205, 447
PpsI	GAGTC	2 cut(s)	205, 447
PsiI	TTATAA	3 cut(s)	174, 933, 1173
Psp124BI	GAGCTC	2 cut(s)	579, 678
Psp1406I	AACGTT	2 cut(s)	873, 1113
PspFI	CCCAGC	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	802, 1042
PspOMI	GGGCCC	1 cut(s)	1040
PspPI	GGNCC	3 cut(s)	800, 1040, 1041
PstI	CTGCAG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	185, 438
RsaNI	GTAC	2 cut(s)	184, 437
RseI	CAYNNNNRTG	2 cut(s)	829, 1069
SacI	GAGCTC	2 cut(s)	579, 678
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	6 cut(s)	72, 378, 477, 480, 969, 972
Sau3AI	GATC	2 cut(s)	406, 730
Sau96I	GGNCC	3 cut(s)	800, 1040, 1041
SchI	GAGTC	2 cut(s)	206, 447
SduI	GDGCHC	3 cut(s)	579, 678, 1044
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	643
SgrAI	CRCCGGYG	1 cut(s)	712
SmiMI	CAYNNNNRTG	2 cut(s)	829, 1069
SmlI	CTYRAG	2 cut(s)	502, 994
SmoI	CTYRAG	2 cut(s)	502, 994
Sse9I	AATT	5 cut(s)	151, 343, 426, 743, 907
SsiI	CCGC	5 cut(s)	71, 377, 479, 710, 971
SspMI	CTAG	3 cut(s)	396, 807, 1047
SstI	GAGCTC	2 cut(s)	579, 678
TaaI	ACNGT	2 cut(s)	211, 721
TaiI	ACGT	2 cut(s)	876, 1116
TaqI	TCGA	4 cut(s)	18, 563, 605, 775
TasI	AATT	5 cut(s)	151, 343, 426, 743, 907
TauI	GCSGC	4 cut(s)	74, 380, 482, 974
TfiI	GAWTC	4 cut(s)	329, 648, 853, 1093
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	1234
TseI	GCWGC	2 cut(s)	476, 968
Tsp45I	GTSAC	1 cut(s)	1234
TspDTI	ATGAA	3 cut(s)	387, 884, 1124
TspGWI	ACGGA	1 cut(s)	219
XapI	RAATTY	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	3 cut(s)	396, 807, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.