PPR repeat
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 76 - 122 | 1.6e-06 | PPR repeat family |
| E_motif | PF20431 | 209 - 254 | 1.8e-11 | E motif |
| LRR_4 | PF12799 | 679 - 715 | 1.9e-06 | Leucine Rich repeats (2 copies) |
| LRR_8 | PF13855 | 680 - 739 | 2.7e-11 | Leucine rich repeat |
| LRR_4 | PF12799 | 703 - 739 | 6.1e-07 | Leucine Rich repeats (2 copies) |
| LRR_8 | PF13855 | 814 - 872 | 8.3e-06 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 791 |
| Acc36I | ACCTGC | 1 cut(s) | 1360 |
| Acc65I | GGTACC | 1 cut(s) | 322 |
| AccB1I | GGYRCC | 3 cut(s) | 322, 560, 2693 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2449 |
| AccI | GTMKAC | 1 cut(s) | 391 |
| AciI | CCGC | 4 cut(s) | 547, 861, 1747, 2018 |
| AclWI | GGATC | 6 cut(s) | 917, 1668, 1681, 2133, 2460, 2532 |
| AcoI | YGGCCR | 1 cut(s) | 2425 |
| AcsI | RAATTY | 9 cut(s) | 25, 223, 1213, 1462, 1491, 1642, 1854, 2204, 2225 |
| AcuI | CTGAAG | 1 cut(s) | 1949 |
| AfaI | GTAC | 9 cut(s) | 61, 69, 324, 651, 804, 1926, 2293, 2520, 2606 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 174, 385, 622, 935, 1969, 2449, 2789 |
| AflIII | ACRYGT | 1 cut(s) | 890 |
| AhlI | ACTAGT | 1 cut(s) | 1220 |
| AjnI | CCWGG | 3 cut(s) | 742, 1715, 2740 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2173, 2205, 2421, 2453 |
| Alw21I | GWGCWC | 2 cut(s) | 2246, 2763 |
| Alw26I | GTCTC | 4 cut(s) | 633, 679, 791, 2605 |
| Alw44I | GTGCAC | 1 cut(s) | 2242 |
| AlwI | GGATC | 6 cut(s) | 917, 1668, 1681, 2133, 2460, 2532 |
| AoxI | GGCC | 4 cut(s) | 373, 2425, 2774, 2798 |
| ApaLI | GTGCAC | 1 cut(s) | 2242 |
| ApeKI | GCWGC | 5 cut(s) | 656, 695, 2185, 2276, 2434 |
| ApoI | RAATTY | 9 cut(s) | 25, 223, 1213, 1462, 1491, 1642, 1854, 2204, 2225 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1356, 1388 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 191 |
| Asp718I | GGTACC | 1 cut(s) | 322 |
| AspLEI | GCGC | 1 cut(s) | 2826 |
| AspS9I | GGNCC | 5 cut(s) | 373, 1253, 2621, 2774, 2798 |
| AsuC2I | CCSGG | 1 cut(s) | 2558 |
| AsuHPI | GGTGA | 5 cut(s) | 424, 623, 904, 988, 2000 |
| AsuNHI | GCTAGC | 1 cut(s) | 7 |
| AvaII | GGWCC | 2 cut(s) | 1253, 2621 |
| BaeGI | GKGCMC | 2 cut(s) | 2246, 2698 |
| BalI | TGGCCA | 1 cut(s) | 2427 |
| BamHI | GGATCC | 1 cut(s) | 1673 |
| BanI | GGYRCC | 3 cut(s) | 322, 560, 2693 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1324, 1356 |
| BbsI | GAAGAC | 2 cut(s) | 828, 1366 |
| Bbv12I | GWGCWC | 2 cut(s) | 2246, 2763 |
| BbvI | GCAGC | 5 cut(s) | 668, 682, 2172, 2288, 2446 |
| BccI | CCATC | 9 cut(s) | 403, 1126, 1195, 1270, 1569, 1933, 2638, 2747, 2765 |
| BciT130I | CCWGG | 3 cut(s) | 744, 1717, 2742 |
| BcnI | CCSGG | 1 cut(s) | 2558 |
| BcoDI | GTCTC | 4 cut(s) | 633, 679, 791, 2605 |
| BcuI | ACTAGT | 1 cut(s) | 1220 |
| BfaI | CTAG | 9 cut(s) | 8, 1037, 1082, 1221, 1832, 1977, 2634, 2813, 2827 |
| BfmI | CTRYAG | 4 cut(s) | 361, 565, 1367, 2274 |
| BfoI | RGCGCY | 1 cut(s) | 2827 |
| BfuAI | ACCTGC | 1 cut(s) | 1360 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 372 |
| BisI | GCNGC | 5 cut(s) | 657, 696, 2186, 2277, 2435 |
| BlsI | GCNGC | 5 cut(s) | 658, 697, 2187, 2278, 2436 |
| Bme1390I | CCNGG | 4 cut(s) | 744, 1717, 2558, 2742 |
| Bme18I | GGWCC | 2 cut(s) | 1253, 2621 |
| BmgT120I | GGNCC | 5 cut(s) | 373, 1253, 2621, 2774, 2798 |
| BmiI | GGNNCC | 7 cut(s) | 324, 528, 562, 572, 741, 1675, 2695 |
| BmrFI | CCNGG | 4 cut(s) | 744, 1717, 2558, 2742 |
| BmrI | ACTGGG | 2 cut(s) | 986, 2319 |
| BmsI | GCATC | 8 cut(s) | 271, 443, 682, 894, 1982, 2323, 2570, 2725 |
| BmtI | GCTAGC | 1 cut(s) | 11 |
| BmuI | ACTGGG | 2 cut(s) | 986, 2319 |
| BpiI | GAAGAC | 2 cut(s) | 828, 1366 |
| BpmI | CTGGAG | 3 cut(s) | 801, 1699, 2241 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2778 |
| BpuEI | CTTGAG | 1 cut(s) | 2265 |
| BpuMI | CCSGG | 1 cut(s) | 2558 |
| BsaI | GGTCTC | 1 cut(s) | 791 |
| BsaJI | CCNNGG | 5 cut(s) | 634, 743, 2180, 2232, 2741 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1578, 1608, 2456, 2486 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 174, 385, 622, 935, 1969, 2449, 2789 |
| Bse1I | ACTGG | 6 cut(s) | 981, 1134, 1333, 2152, 2325, 2526 |
| Bse3DI | GCAATG | 1 cut(s) | 97 |
| BseBI | CCWGG | 3 cut(s) | 744, 1717, 2742 |
| BseDI | CCNNGG | 5 cut(s) | 634, 743, 2180, 2232, 2741 |
| BseGI | GGATG | 3 cut(s) | 458, 1262, 2758 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 174, 385, 622, 935, 1969, 2449, 2789 |
| BseMI | GCAATG | 1 cut(s) | 97 |
| BseMII | CTCAG | 4 cut(s) | 857, 2120, 2769, 2799 |
| BseNI | ACTGG | 6 cut(s) | 981, 1134, 1333, 2152, 2325, 2526 |
| BseRI | GAGGAG | 1 cut(s) | 831 |
| BseSI | GKGCMC | 2 cut(s) | 2246, 2698 |
| BseXI | GCAGC | 5 cut(s) | 668, 682, 2172, 2288, 2446 |
| BseYI | CCCAGC | 1 cut(s) | 2167 |
| BsgI | GTGCAG | 2 cut(s) | 769, 1200 |
| BshFI | GGCC | 4 cut(s) | 375, 2427, 2776, 2800 |
| BshNI | GGYRCC | 3 cut(s) | 322, 560, 2693 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2246, 2763 |
| BsiSI | CCGG | 2 cut(s) | 2475, 2558 |
| BsiWI | CGTACG | 1 cut(s) | 802 |
| BslFI | GGGAC | 3 cut(s) | 997, 2185, 2307 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 174, 385, 622, 935, 1969, 2449, 2789 |
| BsmAI | GTCTC | 4 cut(s) | 633, 679, 791, 2605 |
| BsmFI | GGGAC | 3 cut(s) | 997, 2185, 2307 |
| BsmI | GAATGC | 2 cut(s) | 1410, 2188 |
| BsnI | GGCC | 4 cut(s) | 375, 2427, 2776, 2800 |
| Bso31I | GGTCTC | 1 cut(s) | 791 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2246, 2698, 2763 |
| Bsp1407I | TGTACA | 1 cut(s) | 67 |
| Bsp143I | GATC | 9 cut(s) | 262, 700, 909, 1039, 1069, 1673, 2125, 2452, 2524 |
| BspACI | CCGC | 4 cut(s) | 547, 861, 1747, 2018 |
| BspANI | GGCC | 4 cut(s) | 375, 2427, 2776, 2800 |
| BspCNI | CTCAG | 4 cut(s) | 856, 2121, 2770, 2800 |
| BspLI | GGNNCC | 7 cut(s) | 324, 528, 562, 572, 741, 1675, 2695 |
| BspMAI | CTGCAG | 2 cut(s) | 1371, 2278 |
| BspMI | ACCTGC | 1 cut(s) | 1360 |
| BspOI | GCTAGC | 1 cut(s) | 11 |
| BspPI | GGATC | 6 cut(s) | 917, 1668, 1681, 2133, 2460, 2532 |
| BspQI | GCTCTTC | 1 cut(s) | 469 |
| BspT107I | GGYRCC | 3 cut(s) | 322, 560, 2693 |
| BspTNI | GGTCTC | 1 cut(s) | 791 |
| BsrDI | GCAATG | 1 cut(s) | 97 |
| BsrGI | TGTACA | 1 cut(s) | 67 |
| BsrI | ACTGG | 6 cut(s) | 981, 1134, 1333, 2152, 2325, 2526 |
| BssECI | CCNNGG | 5 cut(s) | 634, 743, 2180, 2232, 2741 |
| BssMI | GATC | 9 cut(s) | 262, 700, 909, 1039, 1069, 1673, 2125, 2452, 2524 |
| BssT1I | CCWWGG | 3 cut(s) | 634, 2180, 2232 |
| Bst2UI | CCWGG | 3 cut(s) | 744, 1717, 2742 |
| Bst4CI | ACNGT | 3 cut(s) | 802, 1169, 2321 |
| Bst6I | CTCTTC | 4 cut(s) | 469, 1058, 1437, 2181 |
| BstAUI | TGTACA | 1 cut(s) | 67 |
| BstC8I | GCNNGC | 1 cut(s) | 9 |
| BstDEI | CTNAG | 8 cut(s) | 820, 843, 2072, 2129, 2399, 2456, 2778, 2808 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 383, 933 |
| BstF5I | GGATG | 3 cut(s) | 458, 1262, 2758 |
| BstH2I | RGCGCY | 1 cut(s) | 2827 |
| BstHHI | GCGC | 1 cut(s) | 2826 |
| BstKTI | GATC | 9 cut(s) | 265, 703, 912, 1042, 1072, 1676, 2128, 2455, 2527 |
| BstMAI | GTCTC | 4 cut(s) | 633, 679, 791, 2605 |
| BstMBI | GATC | 9 cut(s) | 262, 700, 909, 1039, 1069, 1673, 2125, 2452, 2524 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 344, 372, 526, 2101 |
| BstNI | CCWGG | 3 cut(s) | 744, 1717, 2742 |
| BstNSI | RCATGY | 3 cut(s) | 182, 894, 1747 |
| BstSCI | CCNGG | 4 cut(s) | 742, 1715, 2556, 2740 |
| BstSFI | CTRYAG | 4 cut(s) | 361, 565, 1367, 2274 |
| BstSLI | GKGCMC | 2 cut(s) | 2246, 2698 |
| BstV1I | GCAGC | 5 cut(s) | 668, 682, 2172, 2288, 2446 |
| BstV2I | GAAGAC | 2 cut(s) | 828, 1366 |
| BstX2I | RGATCY | 4 cut(s) | 1673, 2125, 2452, 2524 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1544, 1684, 2219, 2546 |
| BstYI | RGATCY | 4 cut(s) | 1673, 2125, 2452, 2524 |
| BsuRI | GGCC | 4 cut(s) | 375, 2427, 2776, 2800 |
| BtsCI | GGATG | 3 cut(s) | 458, 1262, 2758 |
| BtsI | GCAGTG | 1 cut(s) | 1485 |
| BtsIMutI | CAGTG | 5 cut(s) | 974, 1326, 1485, 2145, 2332 |
| BveI | ACCTGC | 1 cut(s) | 1360 |
| Cac8I | GCNNGC | 1 cut(s) | 9 |
| CfoI | GCGC | 1 cut(s) | 2826 |
| Cfr13I | GGNCC | 5 cut(s) | 373, 1253, 2621, 2774, 2798 |
| Csp6I | GTAC | 9 cut(s) | 60, 68, 323, 650, 803, 1925, 2292, 2519, 2605 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1636, 1671 |
| CviQI | GTAC | 9 cut(s) | 60, 68, 323, 650, 803, 1925, 2292, 2519, 2605 |
| DdeI | CTNAG | 8 cut(s) | 820, 843, 2072, 2129, 2399, 2456, 2778, 2808 |
| DpnI | GATC | 9 cut(s) | 264, 702, 911, 1041, 1071, 1675, 2127, 2454, 2526 |
| DpnII | GATC | 9 cut(s) | 262, 700, 909, 1039, 1069, 1673, 2125, 2452, 2524 |
| DraI | TTTAAA | 1 cut(s) | 2196 |
| EaeI | YGGCCR | 1 cut(s) | 2425 |
| Eam1104I | CTCTTC | 4 cut(s) | 469, 1058, 1437, 2181 |
| EarI | CTCTTC | 4 cut(s) | 469, 1058, 1437, 2181 |
| EciI | GGCGGA | 1 cut(s) | 2033 |
| Eco130I | CCWWGG | 3 cut(s) | 634, 2180, 2232 |
| Eco31I | GGTCTC | 1 cut(s) | 791 |
| Eco32I | GATATC | 1 cut(s) | 2496 |
| Eco47I | GGWCC | 2 cut(s) | 1253, 2621 |
| Eco57I | CTGAAG | 1 cut(s) | 1949 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 383, 933 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1253 |
| EcoRI | GAATTC | 1 cut(s) | 1642 |
| EcoRII | CCWGG | 3 cut(s) | 742, 1715, 2740 |
| EcoRV | GATATC | 1 cut(s) | 2496 |
| EcoT14I | CCWWGG | 3 cut(s) | 634, 2180, 2232 |
| EcoT22I | ATGCAT | 1 cut(s) | 2338 |
| ErhI | CCWWGG | 3 cut(s) | 634, 2180, 2232 |
| FaqI | GGGAC | 3 cut(s) | 997, 2185, 2307 |
| FblI | GTMKAC | 1 cut(s) | 391 |
| Fnu4HI | GCNGC | 5 cut(s) | 657, 696, 2186, 2277, 2435 |
| FokI | GGATG | 3 cut(s) | 465, 1249, 2765 |
| Fsp4HI | GCNGC | 5 cut(s) | 657, 696, 2186, 2277, 2435 |
| FspBI | CTAG | 9 cut(s) | 8, 1037, 1082, 1221, 1832, 1977, 2634, 2813, 2827 |
| GlaI | GCGC | 1 cut(s) | 2825 |
| GluI | GCNGC | 5 cut(s) | 657, 696, 2186, 2277, 2435 |
| GsaI | CCCAGC | 1 cut(s) | 2171 |
| GsuI | CTGGAG | 3 cut(s) | 801, 1699, 2241 |
| HaeII | RGCGCY | 1 cut(s) | 2827 |
| HaeIII | GGCC | 4 cut(s) | 375, 2427, 2776, 2800 |
| HapII | CCGG | 2 cut(s) | 2475, 2558 |
| HhaI | GCGC | 1 cut(s) | 2826 |
| Hin6I | GCGC | 1 cut(s) | 2824 |
| HinP1I | GCGC | 1 cut(s) | 2824 |
| HincII | GTYRAC | 2 cut(s) | 392, 1727 |
| HindII | GTYRAC | 2 cut(s) | 392, 1727 |
| HindIII | AAGCTT | 4 cut(s) | 43, 495, 1206, 1571 |
| HinfI | GANTC | 5 cut(s) | 626, 2131, 2142, 2173, 2677 |
| HpaII | CCGG | 2 cut(s) | 2475, 2558 |
| HphI | GGTGA | 5 cut(s) | 424, 623, 904, 988, 2000 |
| Hpy166II | GTNNAC | 7 cut(s) | 68, 70, 392, 1172, 1727, 1736, 2244 |
| Hpy188I | TCNGA | 9 cut(s) | 153, 408, 486, 625, 880, 1146, 1908, 2130, 2682 |
| Hpy8I | GTNNAC | 7 cut(s) | 68, 70, 392, 1172, 1727, 1736, 2244 |
| HpyCH4III | ACNGT | 3 cut(s) | 802, 1169, 2321 |
| HpyCH4IV | ACGT | 1 cut(s) | 1951 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 344, 372, 526, 2101 |
| HpyF3I | CTNAG | 8 cut(s) | 820, 843, 2072, 2129, 2399, 2456, 2778, 2808 |
| HpySE526I | ACGT | 1 cut(s) | 1951 |
| HspAI | GCGC | 1 cut(s) | 2824 |
| KpnI | GGTACC | 1 cut(s) | 326 |
| Kzo9I | GATC | 9 cut(s) | 262, 700, 909, 1039, 1069, 1673, 2125, 2452, 2524 |
| LguI | GCTCTTC | 1 cut(s) | 469 |
| LmnI | GCTCC | 3 cut(s) | 526, 638, 1475 |
| Lsp1109I | GCAGC | 5 cut(s) | 668, 682, 2172, 2288, 2446 |
| LweI | GCATC | 8 cut(s) | 271, 443, 682, 894, 1982, 2323, 2570, 2725 |
| MaeI | CTAG | 9 cut(s) | 8, 1037, 1082, 1221, 1832, 1977, 2634, 2813, 2827 |
| MaeII | ACGT | 1 cut(s) | 1951 |
| MaeIII | GTNAC | 9 cut(s) | 31, 924, 1113, 1235, 1293, 1385, 1915, 2112, 2387 |
| MalI | GATC | 9 cut(s) | 264, 702, 911, 1041, 1071, 1675, 2127, 2454, 2526 |
| MboI | GATC | 9 cut(s) | 262, 700, 909, 1039, 1069, 1673, 2125, 2452, 2524 |
| MfeI | CAATTG | 3 cut(s) | 1538, 2392, 2429 |
| MflI | RGATCY | 4 cut(s) | 1673, 2125, 2452, 2524 |
| MhlI | GDGCHC | 3 cut(s) | 2246, 2698, 2763 |
| MlsI | TGGCCA | 1 cut(s) | 2427 |
| MluNI | TGGCCA | 1 cut(s) | 2427 |
| MlyI | GAGTC | 3 cut(s) | 635, 2140, 2167 |
| MmeI | TCCRAC | 6 cut(s) | 665, 887, 1225, 1521, 1701, 1874 |
| Mox20I | TGGCCA | 1 cut(s) | 2427 |
| Mph1103I | ATGCAT | 1 cut(s) | 2338 |
| MroXI | GAANNNNTTC | 1 cut(s) | 191 |
| MscI | TGGCCA | 1 cut(s) | 2427 |
| MslI | CAYNNNNRTG | 1 cut(s) | 270 |
| Msp20I | TGGCCA | 1 cut(s) | 2427 |
| MspA1I | CMGCKG | 2 cut(s) | 863, 2449 |
| MspI | CCGG | 2 cut(s) | 2475, 2558 |
| MspR9I | CCNGG | 4 cut(s) | 744, 1717, 2558, 2742 |
| MunI | CAATTG | 3 cut(s) | 1538, 2392, 2429 |
| Mva1269I | GAATGC | 2 cut(s) | 1410, 2188 |
| MvaI | CCWGG | 3 cut(s) | 744, 1717, 2742 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 344, 372, 526, 2101 |
| NciI | CCSGG | 1 cut(s) | 2558 |
| NdeII | GATC | 9 cut(s) | 262, 700, 909, 1039, 1069, 1673, 2125, 2452, 2524 |
| NheI | GCTAGC | 1 cut(s) | 7 |
| NlaIV | GGNNCC | 7 cut(s) | 324, 528, 562, 572, 741, 1675, 2695 |
| NmuCI | GTSAC | 3 cut(s) | 31, 1915, 2387 |
| NsiI | ATGCAT | 1 cut(s) | 2338 |
| NspI | RCATGY | 3 cut(s) | 182, 894, 1747 |
| PciI | ACATGT | 1 cut(s) | 890 |
| PciSI | GCTCTTC | 1 cut(s) | 469 |
| PctI | GAATGC | 2 cut(s) | 1410, 2188 |
| PdmI | GAANNNNTTC | 1 cut(s) | 191 |
| PfeI | GAWTC | 2 cut(s) | 2142, 2677 |
| Pfl23II | CGTACG | 1 cut(s) | 802 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2449 |
| PkrI | GCNGC | 5 cut(s) | 658, 697, 2187, 2278, 2436 |
| PleI | GAGTC | 3 cut(s) | 634, 2139, 2167 |
| PpsI | GAGTC | 3 cut(s) | 634, 2139, 2167 |
| PpuMI | RGGWCCY | 1 cut(s) | 1253 |
| PscI | ACATGT | 1 cut(s) | 890 |
| PsiI | TTATAA | 1 cut(s) | 791 |
| Psp5II | RGGWCCY | 1 cut(s) | 1253 |
| Psp6I | CCWGG | 3 cut(s) | 742, 1715, 2740 |
| PspFI | CCCAGC | 1 cut(s) | 2167 |
| PspGI | CCWGG | 3 cut(s) | 742, 1715, 2740 |
| PspLI | CGTACG | 1 cut(s) | 802 |
| PspN4I | GGNNCC | 7 cut(s) | 324, 528, 562, 572, 741, 1675, 2695 |
| PspPI | GGNCC | 5 cut(s) | 373, 1253, 2621, 2774, 2798 |
| PspPPI | RGGWCCY | 1 cut(s) | 1253 |
| PstI | CTGCAG | 2 cut(s) | 1371, 2278 |
| PsuI | RGATCY | 4 cut(s) | 1673, 2125, 2452, 2524 |
| PvuII | CAGCTG | 1 cut(s) | 2449 |
| RsaI | GTAC | 9 cut(s) | 61, 69, 324, 651, 804, 1926, 2293, 2520, 2606 |
| RsaNI | GTAC | 9 cut(s) | 60, 68, 323, 650, 803, 1925, 2292, 2519, 2605 |
| RseI | CAYNNNNRTG | 1 cut(s) | 270 |
| SalI | GTCGAC | 1 cut(s) | 390 |
| SapI | GCTCTTC | 1 cut(s) | 469 |
| SatI | GCNGC | 5 cut(s) | 657, 696, 2186, 2277, 2435 |
| Sau3AI | GATC | 9 cut(s) | 262, 700, 909, 1039, 1069, 1673, 2125, 2452, 2524 |
| Sau96I | GGNCC | 5 cut(s) | 373, 1253, 2621, 2774, 2798 |
| SchI | GAGTC | 3 cut(s) | 635, 2140, 2167 |
| ScrFI | CCNGG | 4 cut(s) | 744, 1717, 2558, 2742 |
| SduI | GDGCHC | 3 cut(s) | 2246, 2698, 2763 |
| SfaNI | GCATC | 8 cut(s) | 271, 443, 682, 894, 1982, 2323, 2570, 2725 |
| SfcI | CTRYAG | 4 cut(s) | 361, 565, 1367, 2274 |
| SinI | GGWCC | 2 cut(s) | 1253, 2621 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 270 |
| SmlI | CTYRAG | 1 cut(s) | 2280 |
| SmoI | CTYRAG | 1 cut(s) | 2280 |
| SpeI | ACTAGT | 1 cut(s) | 1220 |
| SsiI | CCGC | 4 cut(s) | 547, 861, 1747, 2018 |
| SspI | AATATT | 2 cut(s) | 76, 427 |
| SspMI | CTAG | 9 cut(s) | 8, 1037, 1082, 1221, 1832, 1977, 2634, 2813, 2827 |
| StyD4I | CCNGG | 4 cut(s) | 742, 1715, 2556, 2740 |
| StyI | CCWWGG | 3 cut(s) | 634, 2180, 2232 |
| TaaI | ACNGT | 3 cut(s) | 802, 1169, 2321 |
| TaiI | ACGT | 1 cut(s) | 1954 |
| TaqI | TCGA | 7 cut(s) | 391, 1074, 1440, 1813, 2044, 2099, 2588 |
| TatI | WGTACW | 2 cut(s) | 67, 649 |
| TfiI | GAWTC | 2 cut(s) | 2142, 2677 |
| TscAI | CASTG | 5 cut(s) | 981, 1333, 1485, 2152, 2332 |
| TseFI | GTSAC | 3 cut(s) | 31, 1915, 2387 |
| TseI | GCWGC | 5 cut(s) | 656, 695, 2185, 2276, 2434 |
| Tsp45I | GTSAC | 3 cut(s) | 31, 1915, 2387 |
| TspGWI | ACGGA | 1 cut(s) | 1367 |
| TspRI | CASTG | 5 cut(s) | 981, 1333, 1485, 2152, 2332 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2449 |
| VneI | GTGCAC | 1 cut(s) | 2242 |
| VpaK11BI | GGWCC | 2 cut(s) | 1253, 2621 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 383, 933 |
| XapI | RAATTY | 9 cut(s) | 25, 223, 1213, 1462, 1491, 1642, 1854, 2204, 2225 |
| XbaI | TCTAGA | 2 cut(s) | 1036, 1831 |
| XceI | RCATGY | 3 cut(s) | 182, 894, 1747 |
| XmiI | GTMKAC | 1 cut(s) | 391 |
| XmnI | GAANNNNTTC | 1 cut(s) | 191 |
| XspI | CTAG | 9 cut(s) | 8, 1037, 1082, 1221, 1832, 1977, 2634, 2813, 2827 |
| Zsp2I | ATGCAT | 1 cut(s) | 2338 |