Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8041726.1

Orthogroup ID

OG0003412

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 305

Gene Structure 304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8041726.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 304 bp

atgcctggcccagatggcaaatcattttctctttgcccttactgctacaatagtcctccatttgaaggtattgacacactctttggagccgcaaaatctggttcatctggcaagctgggaaagggggctggcatgccatgcttcctttgcccacatcccacatgtcgacattcattgatatcccaaggagtttgtgcttgccctgaatgtagtggaactcttgttctagaccccgtaagtgctcccaagtggcgactatgttgcaacatgtgcaatttccttgtgctcctcccccaaggggctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003916 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016853 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim

Protein Analysis

101

Amino Acids

10.54

Weight (kDa)

8.02

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32000 AT2G32000
fragaria_vesca	FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750
malus_domestica	MD04G1023600.v1.1
prunus_persica	Prupe.1G173400_v2.0.a1 Prupe.1G173400_v2.0.a1 Prupe.1G173400_v2.0.a1
pyrus_communis	pycom04g02020
rosa_chinensis	RchiOBHm_Chr4g0412031
rosa_laevigata	RLG00000008327
rosa_multiflora	Rmu_co8041726.1_g000001 Rmu_sc0000711.1_g000051
rosa_roxburghii	Rroxscaffold_1G00042480 Rroxscaffold_5G00346360 Rroxscaffold_5G00356250 Rroxscaffold_5G00356340
rosa_rugosa	Rorug04G0106700 Rorug04G0106800 Rorug04G0106900
rosa_samantha	Rh4AG171100 Rh4BG168800 Rh4BG169700 Rh4CG181900 Rh4DG164200 Rh4DG165300
rosa_wichuraiana	Rw0G007770 Rw0G008800 Rw4G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	65, 298
AflIII	ACRYGT	2 cut(s)	161, 267
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	4
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw21I	GWGCWC	2 cut(s)	244, 288
AoxI	GGCC	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspS9I	GGNCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	304
Bbv12I	GWGCWC	2 cut(s)	244, 288
BccI	CCATC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BciT130I	CCWGG	1 cut(s)	6
BfaI	CTAG	1 cut(s)	227
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	184, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 298
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	184, 295
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	65, 298
BseRI	GAGGAG	1 cut(s)	278
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	244, 288
BslI	CCNNNNNNNGG	2 cut(s)	65, 298
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	244, 288, 304
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	184, 295
BssT1I	CCWWGG	2 cut(s)	184, 295
Bst2UI	CCWGG	1 cut(s)	6
BstAPI	GCANNNNNTGC	2 cut(s)	138, 270
BstC8I	GCNNGC	4 cut(s)	113, 130, 134, 199
BstF5I	GGATG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 42, 138, 147, 270
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	3 cut(s)	136, 165, 271
BstSCI	CCNGG	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	4 cut(s)	113, 130, 134, 199
Cfr13I	GGNCC	1 cut(s)	8
CviAII	CATG	4 cut(s)	133, 138, 162, 268
CviJI	RGCY	5 cut(s)	9, 89, 115, 128, 302
CviKI_1	RGCY	5 cut(s)	9, 89, 115, 128, 302
Eco130I	CCWWGG	2 cut(s)	184, 295
Eco24I	GRGCYC	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	2 cut(s)	184, 295
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	2 cut(s)	184, 295
FaeI	CATG	4 cut(s)	136, 141, 165, 271
FaiI	YATR	5 cut(s)	134, 139, 163, 259, 269
FatI	CATG	4 cut(s)	132, 137, 161, 267
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	136, 141, 165, 271
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	264, 273
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 42, 138, 147, 270
Hsp92II	CATG	4 cut(s)	136, 141, 165, 271
LmnI	GCTCC	3 cut(s)	86, 247, 291
LpnPI	CCDG	7 cut(s)	18, 24, 84, 93, 101, 114, 216
MaeI	CTAG	1 cut(s)	227
MhlI	GDGCHC	3 cut(s)	244, 288, 304
MluCI	AATT	1 cut(s)	274
MnlI	CCTC	2 cut(s)	66, 299
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	5 cut(s)	15, 42, 138, 147, 270
NlaIII	CATG	4 cut(s)	136, 141, 165, 271
NlaIV	GGNNCC	1 cut(s)	88
NspI	RCATGY	3 cut(s)	136, 165, 271
PaeI	GCATGC	1 cut(s)	136
PciI	ACATGT	2 cut(s)	161, 267
PkrI	GCNGC	1 cut(s)	91
PscI	ACATGT	2 cut(s)	161, 267
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	165
SatI	GCNGC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	3 cut(s)	244, 288, 304
SetI	ASST	2 cut(s)	70, 117
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	2 cut(s)	184, 295
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	274
TauI	GCSGC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	93, 162
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	3 cut(s)	136, 165, 271
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.