Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003412

Physical Location & Seq

Genomic Coordinates Reverse (-)

32647650 .. 32658593

Gene Structure 10944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG164200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATCCTTATTTACTGGCTATCATTTTCATGGATGCCCATAATGGCAAAGACAAATTTAATCATGCTTTGCTCTACAAGGAACTTACATGCCCTCTGGATAACTTTGAGCTATTAATCTGCTCCATGCCTGGCCCAGGTGGCAAGTCATTTTCTCTTTGCCCTTACTGCTACAATAGTCCTCCATTTGAAGGTATCGACACTCTCTTTGGAGCTGCAAAATCTGGTTCATCTGGCAAGCTGGGAAAGGGGGCTGGCATGCCATGCTTCCTTTGCCCGCATCCCACATGTCGAAATTCATTGATATCCCAAGGAGTCTGTGCTTGCCCTGAATGTAGTGGAACTCTTGTTCTAGACCCCGTAAGTGCTCCCAAGTGGCGACTATGTTGCAACATGTGCAATTTCCTTGTGCTCCTCCCCCAAGGGGCTCATCAAATCTCCACTACTCCAGAGCGGTGTCCTGAGTGTGACTCGACAATCATAGAAGTGGACTTTAATAAAAAGACAACACCCTTGGAAGATGGGGCGACCCAATATACTGGTTGTATTCTTTGTGATGAGTTACTTCATTCACTAGTGGAGATGAAGTACGGAAAGTCCTTTTTCAGAGGTTCAAGAGGAAGGGGTAGAGGATCAAGGAGAGGTAGGGGAAGAGGGCGGGGTACTGGCAAAATGGCGGATCCTAAAATGAGCTTCCGTGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003916 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016853 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim

Protein Analysis

235

Amino Acids

25.63

Weight (kDa)

8.42

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32000 AT2G32000
fragaria_vesca	FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750
malus_domestica	MD04G1023600.v1.1
prunus_persica	Prupe.1G173400_v2.0.a1 Prupe.1G173400_v2.0.a1 Prupe.1G173400_v2.0.a1
pyrus_communis	pycom04g02020
rosa_chinensis	RchiOBHm_Chr4g0412031
rosa_laevigata	RLG00000008327
rosa_multiflora	Rmu_co8041726.1_g000001 Rmu_sc0000711.1_g000051
rosa_roxburghii	Rroxscaffold_1G00042480 Rroxscaffold_5G00346360 Rroxscaffold_5G00356250 Rroxscaffold_5G00356340
rosa_rugosa	Rorug04G0106700 Rorug04G0106800 Rorug04G0106900
rosa_samantha	Rh4AG171100 Rh4BG168800 Rh4BG169700 Rh4CG181900 Rh4DG164200 Rh4DG165300
rosa_wichuraiana	Rw0G007770 Rw0G008800 Rw4G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	454
AciI	CCGC	4 cut(s)	278, 454, 658, 677
AclWI	GGATC	4 cut(s)	12, 640, 674, 687
AcsI	RAATTY	2 cut(s)	56, 295
AfaI	GTAC	2 cut(s)	590, 664
AfiI	CCNNNNNNNGG	3 cut(s)	137, 191, 424
AflIII	ACRYGT	2 cut(s)	287, 393
AgsI	TTSAA	2 cut(s)	191, 615
AhlI	ACTAGT	1 cut(s)	574
AjnI	CCWGG	2 cut(s)	130, 136
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	4 cut(s)	112, 215, 241, 693
AluI	AGCT	4 cut(s)	112, 215, 241, 693
Alw21I	GWGCWC	2 cut(s)	370, 414
AlwI	GGATC	4 cut(s)	12, 640, 674, 687
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	2 cut(s)	56, 295
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AseI	ATTAAT	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	134
BamHI	GGATCC	2 cut(s)	4, 679
BanII	GRGCYC	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	370, 414
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	515
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BciT130I	CCWGG	2 cut(s)	132, 138
BcuI	ACTAGT	1 cut(s)	574
BfaI	CTAG	2 cut(s)	353, 575
BglI	GCCNNNNNGGC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	2 cut(s)	132, 138
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	6, 681
BmrFI	CCNGG	2 cut(s)	132, 138
BmsI	GCATC	2 cut(s)	25, 289
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	136, 310, 421, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 191, 424
Bse1I	ACTGG	3 cut(s)	21, 544, 670
BseBI	CCWGG	2 cut(s)	132, 138
BseDI	CCNNGG	4 cut(s)	136, 310, 421, 513
BseGI	GGATG	2 cut(s)	40, 280
BseLI	CCNNNNNNNGG	3 cut(s)	137, 191, 424
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	3 cut(s)	21, 544, 670
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	370, 414
BslI	CCNNNNNNNGG	3 cut(s)	137, 191, 424
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	3 cut(s)	370, 414, 430
Bsp143I	GATC	3 cut(s)	4, 632, 679
BspACI	CCGC	4 cut(s)	278, 454, 658, 677
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	6, 681
BspPI	GGATC	4 cut(s)	12, 640, 674, 687
BsrBI	CCGCTC	1 cut(s)	454
BsrI	ACTGG	3 cut(s)	21, 544, 670
BssECI	CCNNGG	4 cut(s)	136, 310, 421, 513
BssMI	GATC	3 cut(s)	4, 632, 679
BssT1I	CCWWGG	3 cut(s)	310, 421, 513
Bst2UI	CCWGG	2 cut(s)	132, 138
Bst6I	CTCTTC	1 cut(s)	646
BstAPI	GCANNNNNTGC	2 cut(s)	264, 396
BstC8I	GCNNGC	5 cut(s)	239, 256, 260, 278, 325
BstDEI	CTNAG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	40, 280
BstKTI	GATC	3 cut(s)	7, 635, 682
BstMBI	GATC	3 cut(s)	4, 632, 679
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 168, 264, 273, 396
BstNI	CCWGG	2 cut(s)	132, 138
BstNSI	RCATGY	4 cut(s)	93, 262, 291, 397
BstSCI	CCNGG	2 cut(s)	130, 136
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	4, 679
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	2 cut(s)	4, 679
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	40, 280
Cac8I	GCNNGC	5 cut(s)	239, 256, 260, 278, 325
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	589, 663
CviAII	CATG	8 cut(s)	31, 65, 90, 127, 259, 264, 288, 394
CviJI	RGCY	8 cut(s)	20, 112, 135, 215, 241, 254, 428, 693
CviKI_1	RGCY	8 cut(s)	20, 112, 135, 215, 241, 254, 428, 693
CviQI	GTAC	2 cut(s)	589, 663
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	3 cut(s)	6, 634, 681
DpnII	GATC	3 cut(s)	4, 632, 679
Eam1104I	CTCTTC	1 cut(s)	646
EarI	CTCTTC	1 cut(s)	646
EciI	GGCGGA	1 cut(s)	692
Eco130I	CCWWGG	3 cut(s)	310, 421, 513
Eco24I	GRGCYC	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	130, 136
EcoRV	GATATC	1 cut(s)	306
EcoT14I	CCWWGG	3 cut(s)	310, 421, 513
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	3 cut(s)	310, 421, 513
FaeI	CATG	8 cut(s)	34, 68, 93, 130, 262, 267, 291, 397
FatI	CATG	8 cut(s)	30, 64, 89, 126, 258, 263, 287, 393
FauI	CCCGC	2 cut(s)	285, 651
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	47, 267
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	353, 575
GluI	GCNGC	1 cut(s)	216
GsaI	CCCAGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	135
Hin1II	CATG	8 cut(s)	34, 68, 93, 130, 262, 267, 291, 397
HinfI	GANTC	2 cut(s)	315, 470
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	1 cut(s)	608
Hpy188III	TCNNGA	5 cut(s)	98, 353, 449, 461, 615
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	2 cut(s)	185, 615
HpyCH4V	TGCA	3 cut(s)	218, 390, 399
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 168, 264, 273, 396
HpyF3I	CTNAG	1 cut(s)	462
Hsp92II	CATG	8 cut(s)	34, 68, 93, 130, 262, 267, 291, 397
Kzo9I	GATC	3 cut(s)	4, 632, 679
LmnI	GCTCC	4 cut(s)	128, 212, 373, 417
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	25, 289
MaeI	CTAG	2 cut(s)	353, 575
MaeIII	GTNAC	2 cut(s)	467, 561
MalI	GATC	3 cut(s)	6, 634, 681
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	3 cut(s)	4, 632, 679
MboII	GAAGA	2 cut(s)	530, 663
MflI	RGATCY	2 cut(s)	4, 679
MhlI	GDGCHC	3 cut(s)	370, 414, 430
MluCI	AATT	3 cut(s)	56, 295, 400
MlyI	GAGTC	2 cut(s)	324, 464
MnlI	CCTC	8 cut(s)	105, 192, 425, 602, 611, 623, 635, 647
MseI	TTAA	3 cut(s)	60, 116, 495
MslI	CAYNNNNRTG	2 cut(s)	29, 485
MspR9I	CCNGG	2 cut(s)	132, 138
MvaI	CCWGG	2 cut(s)	132, 138
MwoI	GCNNNNNNNGC	5 cut(s)	141, 168, 264, 273, 396
NdeII	GATC	3 cut(s)	4, 632, 679
NlaIII	CATG	8 cut(s)	34, 68, 93, 130, 262, 267, 291, 397
NlaIV	GGNNCC	2 cut(s)	6, 681
NmuCI	GTSAC	1 cut(s)	467
NspI	RCATGY	4 cut(s)	93, 262, 291, 397
PaeI	GCATGC	1 cut(s)	262
PciI	ACATGT	2 cut(s)	287, 393
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	2 cut(s)	323, 464
PpsI	GAGTC	2 cut(s)	323, 464
PscI	ACATGT	2 cut(s)	287, 393
PshBI	ATTAAT	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	130, 136
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	130, 136
PspN4I	GGNNCC	2 cut(s)	6, 681
PspPI	GGNCC	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	4, 679
RsaI	GTAC	2 cut(s)	590, 664
RsaNI	GTAC	2 cut(s)	589, 663
RseI	CAYNNNNRTG	2 cut(s)	29, 485
SaqAI	TTAA	3 cut(s)	60, 116, 495
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	4, 632, 679
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	2 cut(s)	324, 464
ScrFI	CCNGG	2 cut(s)	132, 138
SduI	GDGCHC	3 cut(s)	370, 414, 430
SetI	ASST	8 cut(s)	114, 142, 196, 217, 243, 613, 646, 695
SfaNI	GCATC	2 cut(s)	25, 289
SmiMI	CAYNNNNRTG	2 cut(s)	29, 485
SpeI	ACTAGT	1 cut(s)	574
SphI	GCATGC	1 cut(s)	262
Sse9I	AATT	3 cut(s)	56, 295, 400
SsiI	CCGC	4 cut(s)	278, 454, 658, 677
SspMI	CTAG	2 cut(s)	353, 575
StyD4I	CCNGG	2 cut(s)	130, 136
StyI	CCWWGG	3 cut(s)	310, 421, 513
TaqI	TCGA	3 cut(s)	198, 292, 473
TasI	AATT	3 cut(s)	56, 295, 400
Tru1I	TTAA	3 cut(s)	60, 116, 495
Tru9I	TTAA	3 cut(s)	60, 116, 495
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	5 cut(s)	19, 219, 288, 557, 599
TspGWI	ACGGA	2 cut(s)	606, 686
VspI	ATTAAT	1 cut(s)	116
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	2 cut(s)	56, 295
XbaI	TCTAGA	1 cut(s)	352
XceI	RCATGY	4 cut(s)	93, 262, 291, 397
XspI	CTAG	2 cut(s)	353, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.