Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003412

Physical Location & Seq

Genomic Coordinates Reverse (-)

16623915 .. 16625663

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0106900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCCGCCACACTTCGTGAAGTAGCTATAAAGGCATTGTGGGTGTACTTTTCTGTTTTGTTGTTGTTCGTTTCATCGAATATGCATTACTTGGTTGATGGGGCATCACAAGTTCCTTGTTACTTCATATTTGGAGACTCGTTATCCGATAGTGGAAATAACAATGGGCTTTTGACACTGGCCAAAGTCAATTATCGTCCCTATGGCATTGACTTTCCACAAGGTCCAACTGGAAGGTTCTCCAACGGACGTAACTTAGTCGATATTATTGCTGAACTACTAGGTTTTGATGATTATATTCCCACTTTCGCGGCTGCAATAGGAGGAGAAATAACAAAAGGTGTAAATTATGCATCTGGTGCAGCTGGTATCCGTGACGAATCTGGACGTAACCAGGGAATGAGAATAACCTTGCATAAGCAATTGATAAATCACCAAATCATAGTCAATAAGCTTGTTGCCAATGGTTCACTCACTGCAGATTATCTAAGCAAGTGCATATATTCGATTGGGATAGGCGCTAACGATTACATTAACAACTACTTTATGCCAAAACTCTACCCAACTAGCCGCTTATATACTCCAAAGCAATATGCAGATGTTCTTGTCGAAGAATACTCTCAGCAATTACGGACTCTGTACAAATCTGGGGCAAGGAAGATGGCCCTTATTGGACTAGGTACGATAGGTTCCACACCCTTCGAAGTGGCAATGTGTGGCACAAACGGCACCGTATGTGTTGATAACATCAACAATGCTGCCCAACTTTTCAATGCAAGGCTTAAATCACTTGTCACTGATCTTAACACAAATCTAACAAATGCTAAGTTCATTTACATAGATTATTATGGAATTGGACTATCCAGTGCTGCTTCATCTCCTCCTGGTTCTGTTAATTACACTGCACCATGCTGTGAAGTTGAAATGAATAGTACGACGGGGCTATGCACCCCGTTCAAGACCCCATGCCAGAATAGAACTCAATATGCATTTTGGGATGCTATCCATCCTACTGAGATTTCAAATGTGGTTATAGCAGCAAGAGCATATAATGCTACGCTACCTACTGATGCTTTTCCATATGATATTAGTCACTTAGCTCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003916 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016853 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim

Protein Analysis

369

Amino Acids

40.26

Weight (kDa)

6.51

Isoelectric Point (pI)

26.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	41 - 347	7.3e-35	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32000 AT2G32000
fragaria_vesca	FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750
malus_domestica	MD04G1023600.v1.1
prunus_persica	Prupe.1G173400_v2.0.a1 Prupe.1G173400_v2.0.a1 Prupe.1G173400_v2.0.a1
pyrus_communis	pycom04g02020
rosa_chinensis	RchiOBHm_Chr4g0412031
rosa_laevigata	RLG00000008327
rosa_multiflora	Rmu_co8041726.1_g000001 Rmu_sc0000711.1_g000051
rosa_roxburghii	Rroxscaffold_1G00042480 Rroxscaffold_5G00346360 Rroxscaffold_5G00356250 Rroxscaffold_5G00356340
rosa_rugosa	Rorug04G0106700 Rorug04G0106800 Rorug04G0106900
rosa_samantha	Rh4AG171100 Rh4BG168800 Rh4BG169700 Rh4CG181900 Rh4DG164200 Rh4DG165300
rosa_wichuraiana	Rw0G007770 Rw0G008800 Rw4G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	728
AccII	CGCG	1 cut(s)	311
AciI	CCGC	3 cut(s)	6, 311, 571
AcoI	YGGCCR	2 cut(s)	3, 180
AdeI	CACNNNGTG	1 cut(s)	17
AfaI	GTAC	4 cut(s)	47, 641, 682, 934
AgsI	TTSAA	4 cut(s)	772, 923, 958, 1023
AjnI	CCWGG	2 cut(s)	393, 883
AluBI	AGCT	4 cut(s)	26, 365, 454, 1100
AluI	AGCT	4 cut(s)	26, 365, 454, 1100
Alw26I	GTCTC	1 cut(s)	129
AoxI	GGCC	3 cut(s)	3, 180, 663
ApeKI	GCWGC	5 cut(s)	314, 362, 758, 869, 1037
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	2 cut(s)	224, 664
AsuHPI	GGTGA	1 cut(s)	425
AsuII	TTCGAA	1 cut(s)	702
AvaII	GGWCC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	728
BbvI	GCAGC	5 cut(s)	301, 374, 745, 856, 1049
BccI	CCATC	3 cut(s)	92, 655, 1014
BceAI	ACGGC	1 cut(s)	742
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	2 cut(s)	395, 885
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	3 cut(s)	281, 567, 677
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	8 cut(s)	6, 312, 315, 363, 571, 759, 870, 1038
BlsI	GCNGC	8 cut(s)	7, 313, 316, 364, 572, 760, 871, 1039
Bme1390I	CCNGG	2 cut(s)	395, 885
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	224, 664
BmiI	GGNNCC	2 cut(s)	691, 730
BmrFI	CCNGG	2 cut(s)	395, 885
BmsI	GCATC	4 cut(s)	113, 362, 988, 1060
Bpu14I	TTCGAA	1 cut(s)	702
BsaJI	CCNNGG	1 cut(s)	394
Bse1I	ACTGG	3 cut(s)	183, 235, 864
Bse3DI	GCAATG	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	395, 885
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	2 cut(s)	1003, 1006
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	635, 1005
BseNI	ACTGG	3 cut(s)	183, 235, 864
BseRI	GAGGAG	2 cut(s)	339, 870
BseXI	GCAGC	5 cut(s)	301, 374, 745, 856, 1049
BsgI	GTGCAG	2 cut(s)	381, 888
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	3 cut(s)	5, 182, 665
BshNI	GGYRCC	1 cut(s)	728
BslFI	GGGAC	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	3 cut(s)	5, 182, 665
Bsp119I	TTCGAA	1 cut(s)	702
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	1 cut(s)	799
BspACI	CCGC	3 cut(s)	6, 311, 571
BspANI	GGCC	3 cut(s)	5, 182, 665
BspCNI	CTCAG	2 cut(s)	634, 1006
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	2 cut(s)	691, 730
BspMAI	CTGCAG	1 cut(s)	481
BspT104I	TTCGAA	1 cut(s)	702
BspT107I	GGYRCC	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	717
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	3 cut(s)	183, 235, 864
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	1 cut(s)	799
Bst2UI	CCWGG	2 cut(s)	395, 885
Bst4CI	ACNGT	1 cut(s)	733
BstAPI	GCANNNNNTGC	2 cut(s)	359, 1052
BstAUI	TGTACA	1 cut(s)	639
BstBI	TTCGAA	1 cut(s)	702
BstDEI	CTNAG	6 cut(s)	256, 488, 621, 825, 1014, 1096
BstF5I	GGATG	2 cut(s)	1003, 1006
BstFNI	CGCG	1 cut(s)	311
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	1 cut(s)	802
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	799
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 359, 726, 1043, 1052
BstNI	CCWGG	2 cut(s)	395, 885
BstSCI	CCNGG	2 cut(s)	393, 883
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	5 cut(s)	301, 374, 745, 856, 1049
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	3 cut(s)	5, 182, 665
BtsCI	GGATG	2 cut(s)	1003, 1006
BtsI	GCAGTG	2 cut(s)	474, 900
BtsIMutI	CAGTG	5 cut(s)	176, 474, 795, 871, 900
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	224, 664
Csp6I	GTAC	4 cut(s)	46, 640, 681, 933
CviAII	CATG	2 cut(s)	909, 966
CviQI	GTAC	4 cut(s)	46, 640, 681, 933
DdeI	CTNAG	6 cut(s)	256, 488, 621, 825, 1014, 1096
DpnI	GATC	1 cut(s)	801
DpnII	GATC	1 cut(s)	799
DraIII	CACNNNGTG	1 cut(s)	17
EaeI	YGGCCR	2 cut(s)	3, 180
Eco47I	GGWCC	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	393, 883
EcoT22I	ATGCAT	3 cut(s)	87, 355, 991
FaeI	CATG	2 cut(s)	912, 969
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	2 cut(s)	908, 965
FauNDI	CATATG	1 cut(s)	1081
Fnu4HI	GCNGC	8 cut(s)	6, 312, 315, 363, 571, 759, 870, 1038
FokI	GGATG	2 cut(s)	993, 1010
Fsp4HI	GCNGC	8 cut(s)	6, 312, 315, 363, 571, 759, 870, 1038
FspBI	CTAG	3 cut(s)	281, 567, 677
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	8 cut(s)	6, 312, 315, 363, 571, 759, 870, 1038
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	3 cut(s)	5, 182, 665
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	2 cut(s)	912, 969
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	3 cut(s)	137, 380, 634
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	46, 470
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	17, 384, 958
Hpy8I	GTNNAC	2 cut(s)	46, 470
Hpy99I	CGWCG	1 cut(s)	940
HpyAV	CCTTC	2 cut(s)	228, 709
HpyCH4III	ACNGT	1 cut(s)	733
HpyCH4IV	ACGT	2 cut(s)	250, 388
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 359, 726, 1043, 1052
HpyF3I	CTNAG	6 cut(s)	256, 488, 621, 825, 1014, 1096
HpySE526I	ACGT	2 cut(s)	250, 388
Hsp92II	CATG	2 cut(s)	912, 969
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	799
Lsp1109I	GCAGC	5 cut(s)	301, 374, 745, 856, 1049
LweI	GCATC	4 cut(s)	113, 362, 988, 1060
MaeI	CTAG	3 cut(s)	281, 567, 677
MaeII	ACGT	2 cut(s)	250, 388
MaeIII	GTNAC	6 cut(s)	119, 251, 374, 389, 793, 1091
MalI	GATC	1 cut(s)	801
MboI	GATC	1 cut(s)	799
MboII	GAAGA	2 cut(s)	623, 670
MfeI	CAATTG	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	6 cut(s)	190, 346, 422, 626, 852, 895
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	131, 628
MmeI	TCCRAC	2 cut(s)	251, 267
MnlI	CCTC	2 cut(s)	317, 891
Mox20I	TGGCCA	1 cut(s)	182
Mph1103I	ATGCAT	3 cut(s)	87, 355, 991
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	4 cut(s)	534, 783, 804, 894
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	365
MspR9I	CCNGG	2 cut(s)	395, 885
MunI	CAATTG	1 cut(s)	422
MvaI	CCWGG	2 cut(s)	395, 885
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	5 cut(s)	32, 359, 726, 1043, 1052
NdeI	CATATG	1 cut(s)	1081
NdeII	GATC	1 cut(s)	799
NlaIII	CATG	2 cut(s)	912, 969
NlaIV	GGNNCC	2 cut(s)	691, 730
NmuCI	GTSAC	3 cut(s)	374, 793, 1091
NsiI	ATGCAT	3 cut(s)	87, 355, 991
NspV	TTCGAA	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	8 cut(s)	7, 313, 316, 364, 572, 760, 871, 1039
PleI	GAGTC	2 cut(s)	131, 628
PpsI	GAGTC	2 cut(s)	131, 628
Psp6I	CCWGG	2 cut(s)	393, 883
PspGI	CCWGG	2 cut(s)	393, 883
PspN4I	GGNNCC	2 cut(s)	691, 730
PspPI	GGNCC	2 cut(s)	224, 664
PsrI	GAACNNNNNNTAC	2 cut(s)	673, 705
PstI	CTGCAG	1 cut(s)	481
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	4 cut(s)	47, 641, 682, 934
RsaNI	GTAC	4 cut(s)	46, 640, 681, 933
SaqAI	TTAA	4 cut(s)	534, 783, 804, 894
SatI	GCNGC	8 cut(s)	6, 312, 315, 363, 571, 759, 870, 1038
Sau3AI	GATC	1 cut(s)	799
Sau96I	GGNCC	2 cut(s)	224, 664
SchI	GAGTC	2 cut(s)	131, 628
ScrFI	CCNGG	2 cut(s)	395, 885
SfaNI	GCATC	4 cut(s)	113, 362, 988, 1060
SfcI	CTRYAG	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	702
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	6 cut(s)	190, 346, 422, 626, 852, 895
SsiI	CCGC	3 cut(s)	6, 311, 571
SspMI	CTAG	3 cut(s)	281, 567, 677
StyD4I	CCNGG	2 cut(s)	393, 883
TaaI	ACNGT	1 cut(s)	733
TaiI	ACGT	2 cut(s)	253, 391
TaqI	TCGA	5 cut(s)	77, 261, 506, 609, 702
TasI	AATT	6 cut(s)	190, 346, 422, 626, 852, 895
TatI	WGTACW	2 cut(s)	45, 639
TauI	GCSGC	3 cut(s)	8, 314, 573
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	4 cut(s)	534, 783, 804, 894
Tru9I	TTAA	4 cut(s)	534, 783, 804, 894
TscAI	CASTG	5 cut(s)	183, 481, 802, 871, 907
TseFI	GTSAC	3 cut(s)	374, 793, 1091
TseI	GCWGC	5 cut(s)	314, 362, 758, 869, 1037
Tsp45I	GTSAC	3 cut(s)	374, 793, 1091
TspDTI	ATGAA	5 cut(s)	63, 115, 820, 864, 941
TspGWI	ACGGA	3 cut(s)	261, 362, 646
TspRI	CASTG	5 cut(s)	183, 481, 802, 871, 907
VpaK11BI	GGWCC	1 cut(s)	224
XspI	CTAG	3 cut(s)	281, 567, 677
Zsp2I	ATGCAT	3 cut(s)	87, 355, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.