Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003412

Physical Location & Seq

Genomic Coordinates Reverse (-)

17114874 .. 17115455

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGACAACCTTGTTGAACCTAACAAAGATGAGGCATTGGCTGTAGATGCTCGACAAGAGATAGATTTGAAAGTCGGAGTTGCATTTACACGATTTCAAACAAGTTTTTTTCAGGGGAAATATGGAAATCTCGATGCCAAAGTTATCTCCTATGGGCCATGTCAAACTCCTACCCTTGGTTTTTGTGTACAGCGCTATTTGCAGATAAATACGTTTAAACCTGAAAAATTCTGGTCCGTACGCCCTTACATATTACAAAGTGGCTATGAACTTCAGCTAGACTCGGAGTGTAACAAATTGTTTGACGTCGATGTTGCCGTGATGTTTCAAAAGTTAGTAATGGAAGATGGAATTGCAGAACGGAAAGCAAAGGTCGTCCTTCCGGTCTTAACACGTGAATCTTCTAAAGATTGCTTCAAGTGCACTAGGCTTTGGTCCACAAATGGCTATGCAAGTTGCCGAACGCTTGTATACTCAAGGCTTCATCAGGCTATCCGCGTACCGAGAGCACAGCCTATCCTTCTTCTTTTGACTTTAGAGGCACACTTGGTGCACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003916 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016853 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim

Protein Analysis

186

Amino Acids

21.28

Weight (kDa)

8.71

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topoisom_bac	PF01131	7 - 100	4.9e-21	DNA topoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32000 AT2G32000
fragaria_vesca	FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750 FvH4_4g12750
malus_domestica	MD04G1023600.v1.1
prunus_persica	Prupe.1G173400_v2.0.a1 Prupe.1G173400_v2.0.a1 Prupe.1G173400_v2.0.a1
pyrus_communis	pycom04g02020
rosa_chinensis	RchiOBHm_Chr4g0412031
rosa_laevigata	RLG00000008327
rosa_multiflora	Rmu_co8041726.1_g000001 Rmu_sc0000711.1_g000051
rosa_roxburghii	Rroxscaffold_1G00042480 Rroxscaffold_5G00346360 Rroxscaffold_5G00356250 Rroxscaffold_5G00356340
rosa_rugosa	Rorug04G0106700 Rorug04G0106800 Rorug04G0106900
rosa_samantha	Rh4AG171100 Rh4BG168800 Rh4BG169700 Rh4CG181900 Rh4DG164200 Rh4DG165300
rosa_wichuraiana	Rw0G007770 Rw0G008800 Rw4G014260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	471
AccII	CGCG	1 cut(s)	498
AciI	CCGC	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	257
AcvI	CACGTG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	306
AdeI	CACNNNGTG	1 cut(s)	550
AfaI	GTAC	3 cut(s)	189, 240, 501
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	392
AgsI	TTSAA	5 cut(s)	17, 70, 98, 329, 418
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw21I	GWGCWC	3 cut(s)	425, 511, 555
Alw44I	GTGCAC	2 cut(s)	421, 551
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	1 cut(s)	155
ApaLI	GTGCAC	2 cut(s)	421, 551
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	155, 234, 435
AvaII	GGWCC	2 cut(s)	234, 435
BaeGI	GKGCMC	2 cut(s)	425, 555
BbrPI	CACGTG	1 cut(s)	395
Bbv12I	GWGCWC	3 cut(s)	425, 511, 555
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	278, 426
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	196
Bme18I	GGWCC	2 cut(s)	234, 435
BmgT120I	GGNCC	3 cut(s)	155, 234, 435
BmsI	GCATC	2 cut(s)	37, 124
BpuEI	CTTGAG	1 cut(s)	460
BsaAI	YACGTR	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseSI	GKGCMC	2 cut(s)	425, 555
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	3 cut(s)	425, 511, 555
BsiSI	CCGG	1 cut(s)	383
BsiWI	CGTACG	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	176
BsnI	GGCC	1 cut(s)	157
Bsp1286I	GDGCHC	3 cut(s)	425, 511, 555
Bsp1407I	TGTACA	1 cut(s)	187
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	498
BsrGI	TGTACA	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	175
BssNAI	GTATAC	1 cut(s)	472
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	175
Bst1107I	GTATAC	1 cut(s)	472
BstACI	GRCGYC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	187
BstBAI	YACGTR	1 cut(s)	395
BstFNI	CGCG	1 cut(s)	498
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 199, 420
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	2 cut(s)	425, 555
BstUI	CGCG	1 cut(s)	498
BstZ17I	GTATAC	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	155, 234, 435
Csp6I	GTAC	3 cut(s)	188, 239, 500
CviAII	CATG	1 cut(s)	159
CviJI	RGCY	9 cut(s)	41, 157, 264, 277, 430, 447, 481, 491, 514
CviKI_1	RGCY	9 cut(s)	41, 157, 264, 277, 430, 447, 481, 491, 514
CviQI	GTAC	3 cut(s)	188, 239, 500
DraI	TTTAAA	1 cut(s)	217
DraIII	CACNNNGTG	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	234, 435
Eco47III	AGCGCT	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	257
Eco72I	CACGTG	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	162
FaiI	YATR	7 cut(s)	123, 153, 160, 251, 267, 450, 472
FatI	CATG	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	471
FspBI	CTAG	2 cut(s)	278, 426
GlaI	GCGC	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	1 cut(s)	383
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	162
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	281, 398
HpaII	CCGG	1 cut(s)	383
Hpy166II	GTNNAC	5 cut(s)	188, 423, 438, 472, 553
Hpy188I	TCNGA	2 cut(s)	77, 286
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	5 cut(s)	188, 423, 438, 472, 553
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	389, 530
HpyCH4IV	ACGT	3 cut(s)	212, 306, 394
HpyCH4V	TGCA	6 cut(s)	83, 202, 356, 423, 452, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 199, 420
HpySE526I	ACGT	3 cut(s)	212, 306, 394
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	162
HspAI	GCGC	1 cut(s)	193
LpnPI	CCDG	5 cut(s)	98, 217, 234, 396, 473
LweI	GCATC	2 cut(s)	37, 124
MaeI	CTAG	2 cut(s)	278, 426
MaeII	ACGT	3 cut(s)	212, 306, 394
MaeIII	GTNAC	1 cut(s)	290
MboII	GAAGA	3 cut(s)	356, 393, 515
MhlI	GDGCHC	3 cut(s)	425, 511, 555
MluCI	AATT	3 cut(s)	227, 296, 351
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	25, 532
MseI	TTAA	2 cut(s)	216, 389
MspI	CCGG	1 cut(s)	383
MssI	GTTTAAAC	1 cut(s)	217
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	47, 199, 420
NlaIII	CATG	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	398
Pfl23II	CGTACG	1 cut(s)	238
PleI	GAGTC	1 cut(s)	275
PmaCI	CACGTG	1 cut(s)	395
PmeI	GTTTAAAC	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	395
PspCI	CACGTG	1 cut(s)	395
PspLI	CGTACG	1 cut(s)	238
PspPI	GGNCC	3 cut(s)	155, 234, 435
RsaI	GTAC	3 cut(s)	189, 240, 501
RsaNI	GTAC	3 cut(s)	188, 239, 500
SaqAI	TTAA	2 cut(s)	216, 389
Sau96I	GGNCC	3 cut(s)	155, 234, 435
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	3 cut(s)	425, 511, 555
SetI	ASST	8 cut(s)	12, 22, 215, 223, 279, 309, 375, 397
SfaNI	GCATC	2 cut(s)	37, 124
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	2 cut(s)	234, 435
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	3 cut(s)	227, 296, 351
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	2 cut(s)	278, 426
StyI	CCWWGG	1 cut(s)	175
TaiI	ACGT	3 cut(s)	215, 309, 397
TaqI	TCGA	3 cut(s)	52, 132, 309
TasI	AATT	3 cut(s)	227, 296, 351
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	216, 389
Tru9I	TTAA	2 cut(s)	216, 389
TspDTI	ATGAA	2 cut(s)	282, 473
TspGWI	ACGGA	2 cut(s)	226, 376
VneI	GTGCAC	2 cut(s)	421, 551
VpaK11BI	GGWCC	2 cut(s)	234, 435
XapI	RAATTY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	471
XspI	CTAG	2 cut(s)	278, 426
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.