Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8191516.1

Orthogroup ID

OG0010284

Physical Location & Seq

Genomic Coordinates Forward (+)

66 .. 452

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8191516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggccttagcctccggtctccgcctctcttcctctatcctccgttaccgcctccctgcaccgctcaactccacccgcttctgcggcctccgccacagcctctccgacctccgtttcctctcagcttcctcctctcgtactaggccccagctccgctccatcaaagcgaggccccgcgacgacgacgacgacctcctcgcaggcggcgaggggcagaatgggaatgggagcgtccttgtcaaggactcagacgagagaatcgttcgtgttgagctccacaaggaggccaccgatgcctacatggcctatgctatgtctgtactgctcggccgtgccctgccggacgttcgcgacggtctcaagccagtgcaccgccgcattctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0009295 GO:0009507 GO:0009536 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseA_C DNA_topoisoIV

Protein Analysis

128

Amino Acids

14.16

Weight (kDa)

10.09

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10690
fragaria_vesca	FvH4_7g05000 FvH4_7g05000
malus_domestica	MD02G1265100.v1.1 MD07G1054300.v1.1
prunus_persica	Prupe.2G060900_v2.0.a1 Prupe.2G060900_v2.0.a1
pyrus_communis	pycom02g22650 pycom07g04200
rosa_chinensis	RchiOBHm_Chr1g0331271
rosa_laevigata	RLG00000029745
rosa_multiflora	Rmu_co8191516.1_g000001 Rmu_sc0000597.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319250
rosa_rugosa	Rorug01G0092400 Rorug01G0092500
rosa_samantha	Rh1AG117100 Rh1BG087900 Rh1CG112100 Rh1DG120900
rosa_wichuraiana	Rw1G009370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	64, 156
AccII	CGCG	2 cut(s)	177, 351
AcoI	YGGCCR	1 cut(s)	328
AfaI	GTAC	2 cut(s)	139, 321
AfiI	CCNNNNNNNGG	2 cut(s)	241, 283
AluBI	AGCT	3 cut(s)	125, 151, 274
AluI	AGCT	3 cut(s)	125, 151, 274
Alw21I	GWGCWC	2 cut(s)	276, 372
Alw26I	GTCTC	2 cut(s)	23, 362
Alw44I	GTGCAC	1 cut(s)	368
AoxI	GGCC	7 cut(s)	3, 85, 143, 170, 285, 303, 328
ApaLI	GTGCAC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	144, 171
BaeGI	GKGCMC	2 cut(s)	337, 372
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	2 cut(s)	276, 372
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	315
BcoDI	GTCTC	2 cut(s)	23, 362
BfaI	CTAG	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	302
BisI	GCNGC	3 cut(s)	85, 205, 376
BlsI	GCNGC	3 cut(s)	86, 206, 377
BmgT120I	GGNCC	2 cut(s)	144, 171
BmiI	GGNNCC	2 cut(s)	146, 173
BmsI	GCATC	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	344
BsaI	GGTCTC	2 cut(s)	23, 362
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 283
Bse1I	ACTGG	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	241, 283
BseMII	CTCAG	2 cut(s)	135, 261
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	2 cut(s)	121, 185
BseSI	GKGCMC	2 cut(s)	337, 372
BseX3I	CGGCCG	1 cut(s)	328
BseYI	CCCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	42
Bsh1236I	CGCG	2 cut(s)	177, 351
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	7 cut(s)	5, 87, 145, 172, 287, 305, 330
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	2 cut(s)	276, 372
BsiSI	CCGG	2 cut(s)	15, 341
BslI	CCNNNNNNNGG	2 cut(s)	241, 283
BsmAI	GTCTC	2 cut(s)	23, 362
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	7 cut(s)	5, 87, 145, 172, 287, 305, 330
Bso31I	GGTCTC	2 cut(s)	23, 362
Bsp1286I	GDGCHC	3 cut(s)	276, 337, 372
Bsp68I	TCGCGA	1 cut(s)	351
BspANI	GGCC	7 cut(s)	5, 87, 145, 172, 287, 305, 330
BspCNI	CTCAG	2 cut(s)	134, 260
BspFNI	CGCG	2 cut(s)	177, 351
BspLI	GGNNCC	2 cut(s)	146, 173
BspTNI	GGTCTC	2 cut(s)	23, 362
BsrBI	CCGCTC	2 cut(s)	64, 156
BsrI	ACTGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	3 cut(s)	7, 121, 247
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstFNI	CGCG	2 cut(s)	177, 351
BstMAI	GTCTC	2 cut(s)	23, 362
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 90, 293, 302
BstSLI	GKGCMC	2 cut(s)	337, 372
BstUI	CGCG	2 cut(s)	177, 351
BstZI	CGGCCG	1 cut(s)	328
BsuRI	GGCC	7 cut(s)	5, 87, 145, 172, 287, 305, 330
BtsIMutI	CAGTG	1 cut(s)	372
BtuMI	TCGCGA	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	144, 171
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	138, 320
CviAII	CATG	1 cut(s)	301
CviQI	GTAC	2 cut(s)	138, 320
DdeI	CTNAG	3 cut(s)	7, 121, 247
EaeI	YGGCCR	1 cut(s)	328
EagI	CGGCCG	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
EciI	GGCGGA	2 cut(s)	11, 80
Ecl136II	GAGCTC	1 cut(s)	274
EclXI	CGGCCG	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	2 cut(s)	23, 362
Eco52I	CGGCCG	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	2 cut(s)	144, 171
EcoT38I	GRGCYC	1 cut(s)	276
FaeI	CATG	1 cut(s)	304
FaiI	YATR	3 cut(s)	302, 309, 314
FatI	CATG	1 cut(s)	300
FauI	CCCGC	2 cut(s)	83, 182
Fnu4HI	GCNGC	3 cut(s)	85, 205, 376
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	85, 205, 376
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	3 cut(s)	85, 205, 376
GsaI	CCCAGC	1 cut(s)	151
HaeIII	GGCC	7 cut(s)	5, 87, 145, 172, 287, 305, 330
HapII	CCGG	2 cut(s)	15, 341
HgaI	GACGC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	304
HinfI	GANTC	2 cut(s)	245, 258
HpaII	CCGG	2 cut(s)	15, 341
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	106, 250
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	5 cut(s)	182, 185, 188, 191, 356
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	2 cut(s)	59, 370
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 90, 293, 302
HpyF3I	CTNAG	3 cut(s)	7, 121, 247
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	304
LmnI	GCTCC	4 cut(s)	156, 161, 228, 279
LpnPI	CCDG	7 cut(s)	28, 69, 161, 186, 350, 354, 378
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	44
MbiI	CCGCTC	2 cut(s)	64, 156
MboII	GAAGA	1 cut(s)	21
MhlI	GDGCHC	3 cut(s)	276, 337, 372
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	129
MspI	CCGG	2 cut(s)	15, 341
Mva1269I	GAATGC	1 cut(s)	378
MvnI	CGCG	2 cut(s)	177, 351
MwoI	GCNNNNNNNGC	4 cut(s)	84, 90, 293, 302
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	2 cut(s)	146, 173
NmeAIII	GCCGAG	1 cut(s)	306
NruI	TCGCGA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	3 cut(s)	186, 204, 258
PctI	GAATGC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	258
PkrI	GCNGC	3 cut(s)	86, 206, 377
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	146, 173
PspPI	GGNCC	2 cut(s)	144, 171
RruI	TCGCGA	1 cut(s)	351
RsaI	GTAC	2 cut(s)	139, 321
RsaNI	GTAC	2 cut(s)	138, 320
SacI	GAGCTC	1 cut(s)	276
SatI	GCNGC	3 cut(s)	85, 205, 376
Sau96I	GGNCC	2 cut(s)	144, 171
SchI	GAGTC	1 cut(s)	239
SduI	GDGCHC	3 cut(s)	276, 337, 372
SetI	ASST	6 cut(s)	111, 127, 153, 195, 276, 348
SfaNI	GCATC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	1 cut(s)	348
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	3 cut(s)	87, 207, 378
TfiI	GAWTC	1 cut(s)	258
TscAI	CASTG	1 cut(s)	372
TspGWI	ACGGA	2 cut(s)	32, 101
TspRI	CASTG	1 cut(s)	372
VneI	GTGCAC	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	239
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.