Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010284

Physical Location & Seq

Genomic Coordinates Reverse (-)

15070354 .. 15073549

Gene Structure 3196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0092500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGGGGAAGACGTTCTTTGTAATTCTGGTCTACCATTTACAATAATCAGGGCTGGTAGATTGACAGATGGACCTTACACATCATATGATCTTAATACATTGCTCAAAGCTACAGCTGGCCAACGATGTGCAGTCTTAATAGGTCAAGGAGATACACTAGTTGGAGAGGTTAGCAGACTTGTTGTTGCTGAAGCTTGCATACAGGCGCTGGACATAAAATGCACTGAAGGAAAAATATTTGAAGTCAACTCAGTTGAGCTGATCAAGATGGAGGCTGATATCCTCCTATCTCTGAAATTTGAAATGGGAAATCTCAATGTTGGTACATCCTTGAGAAAATTCATTGATCTTGCTCAAGGGAGTTACTACAAAGTTCTTATTTTGCCAAGGGCAGATCATTGGAGTTCCTGTAGCTTTGCATCTATTCAAGAAGATGATATGATCTACAAGACTCTTTCCACCTTTCCTACTTCAGCGCTTATACTAGCAGACCAGTATAGGCTGGAGTATGACAACAAAAGAATCACAACCTTCAATAAGCTGATCAGCCTACTGCAAGTGGCTGAGAGACATAATGAGGTTCTCTTGAACAACAATGCCAGGCCCACTGGGACAAAGAACATTCCCGAGGCTAGTTATGGAAAAATGAAAGGTGGTAAGAACTCCAATGCAAAGGGGTTTAGACGTACTGATCCTTACCCACGTGGCAACAATGCACCACGTGGAAAGGGACATGGGGATCGTGGAAACAAGATGCAAAAGGAAAGAGTTGACAATGAACCATGCTATAGGTGTGGATTCATTGGGCATTGGTACAAGAACTGCCAAGCAAGTAACAGAGTAGCAGCCAATTACAAGAGGTATAGAGAGTCCAAAGAACAAGAGACTCACTATATGGAAGAAGGAGGTCATGACCTAGACGTCAACCTTACAATTGCAGACTTCAATGGCAAAGAGGAACTTGCTAAGTCAATGGATGCTCTCAATCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0009295 GO:0009507 GO:0009536 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseA_C DNA_topoisoIV

Protein Analysis

331

Amino Acids

37.03

Weight (kDa)

7.55

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10690
fragaria_vesca	FvH4_7g05000 FvH4_7g05000
malus_domestica	MD02G1265100.v1.1 MD07G1054300.v1.1
prunus_persica	Prupe.2G060900_v2.0.a1 Prupe.2G060900_v2.0.a1
pyrus_communis	pycom02g22650 pycom07g04200
rosa_chinensis	RchiOBHm_Chr1g0331271
rosa_laevigata	RLG00000029745
rosa_multiflora	Rmu_co8191516.1_g000001 Rmu_sc0000597.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319250
rosa_rugosa	Rorug01G0092400 Rorug01G0092500
rosa_samantha	Rh1AG117100 Rh1BG087900 Rh1CG112100 Rh1DG120900
rosa_wichuraiana	Rw1G009370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	920
AatII	GACGTC	1 cut(s)	924
AccI	GTMKAC	1 cut(s)	31
AclWI	GGATC	2 cut(s)	686, 747
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	2 cut(s)	296, 338
AcuI	CTGAAG	3 cut(s)	210, 246, 456
AcvI	CACGTG	2 cut(s)	704, 722
AcyI	GRCGYC	1 cut(s)	921
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	3 cut(s)	325, 688, 815
AfeI	AGCGCT	1 cut(s)	477
AgsI	TTSAA	6 cut(s)	242, 302, 428, 535, 589, 946
AhlI	ACTAGT	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	599
AluBI	AGCT	6 cut(s)	110, 116, 194, 259, 414, 541
AluI	AGCT	6 cut(s)	110, 116, 194, 259, 414, 541
Alw26I	GTCTC	2 cut(s)	562, 878
AlwI	GGATC	2 cut(s)	686, 747
AlwNI	CAGNNNCTG	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	626
Aor51HI	AGCGCT	1 cut(s)	477
AoxI	GGCC	2 cut(s)	118, 602
ApeKI	GCWGC	1 cut(s)	845
ApoI	RAATTY	2 cut(s)	296, 338
Asp700I	GAANNNNTTC	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	208, 478
AspS9I	GGNCC	2 cut(s)	71, 603
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	71
BaeI	ACNNNNGTAYC	2 cut(s)	144, 177
BalI	TGGCCA	1 cut(s)	120
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbrPI	CACGTG	2 cut(s)	704, 722
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	857
BccI	CCATC	2 cut(s)	62, 262
BciT130I	CCWGG	1 cut(s)	601
BclI	TGATCA	2 cut(s)	261, 543
BcoDI	GTCTC	2 cut(s)	562, 878
BcuI	ACTAGT	1 cut(s)	157
BfaI	CTAG	4 cut(s)	158, 485, 633, 917
BfmI	CTRYAG	3 cut(s)	111, 409, 787
BfoI	RGCGCY	2 cut(s)	209, 479
BisI	GCNGC	1 cut(s)	846
BlsI	GCNGC	1 cut(s)	847
Bme1390I	CCNGG	1 cut(s)	601
Bme18I	GGWCC	1 cut(s)	71
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	71, 603
BmrFI	CCNGG	1 cut(s)	601
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	3 cut(s)	428, 744, 967
BmuI	ACTGGG	1 cut(s)	618
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	524
BpuEI	CTTGAG	2 cut(s)	339, 352
BsaAI	YACGTR	2 cut(s)	704, 722
BsaHI	GRCGYC	1 cut(s)	921
BsaJI	CCNNGG	2 cut(s)	386, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bse1I	ACTGG	2 cut(s)	493, 613
Bse3DI	GCAATG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	601
BseDI	CCNNGG	2 cut(s)	386, 627
BseGI	GGATG	2 cut(s)	326, 982
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	264, 555
BseNI	ACTGG	2 cut(s)	493, 613
BseXI	GCAGC	1 cut(s)	857
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	120, 604
BsiHKCI	CYCGRG	1 cut(s)	626
BslFI	GGGAC	2 cut(s)	625, 744
BsmAI	GTCTC	2 cut(s)	562, 878
BsmFI	GGGAC	2 cut(s)	625, 744
BsnI	GGCC	2 cut(s)	120, 604
BsoBI	CYCGRG	1 cut(s)	626
Bsp143I	GATC	8 cut(s)	88, 261, 346, 394, 441, 543, 691, 739
BspANI	GGCC	2 cut(s)	120, 604
BspCNI	CTCAG	2 cut(s)	263, 556
BspHI	TCATGA	1 cut(s)	910
BspPI	GGATC	2 cut(s)	686, 747
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	493, 613
BssECI	CCNNGG	2 cut(s)	386, 627
BssMI	GATC	8 cut(s)	88, 261, 346, 394, 441, 543, 691, 739
BssNI	GRCGYC	1 cut(s)	921
BssT1I	CCWWGG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	601
BstACI	GRCGYC	1 cut(s)	921
BstBAI	YACGTR	2 cut(s)	704, 722
BstC8I	GCNNGC	2 cut(s)	118, 196
BstDEI	CTNAG	3 cut(s)	250, 564, 966
BstF5I	GGATG	2 cut(s)	326, 982
BstH2I	RGCGCY	2 cut(s)	209, 479
BstHHI	GCGC	2 cut(s)	208, 478
BstKTI	GATC	8 cut(s)	91, 264, 349, 397, 444, 546, 694, 742
BstMAI	GTCTC	2 cut(s)	562, 878
BstMBI	GATC	8 cut(s)	88, 261, 346, 394, 441, 543, 691, 739
BstNI	CCWGG	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	599
BstSFI	CTRYAG	3 cut(s)	111, 409, 787
BstV1I	GCAGC	1 cut(s)	857
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	120, 604
BtsCI	GGATG	2 cut(s)	326, 982
BtsIMutI	CAGTG	2 cut(s)	222, 606
Cac8I	GCNNGC	2 cut(s)	118, 196
CaiI	CAGNNNCTG	1 cut(s)	208
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	2 cut(s)	208, 478
Cfr13I	GGNCC	2 cut(s)	71, 603
Csp6I	GTAC	3 cut(s)	324, 687, 814
CviAII	CATG	3 cut(s)	734, 783, 911
CviQI	GTAC	3 cut(s)	324, 687, 814
DdeI	CTNAG	3 cut(s)	250, 564, 966
DpnI	GATC	8 cut(s)	90, 263, 348, 396, 443, 545, 693, 741
DpnII	GATC	8 cut(s)	88, 261, 346, 394, 441, 543, 691, 739
DraIII	CACNNNGTG	1 cut(s)	722
DrdI	GACNNNNNNGTC	1 cut(s)	920
DseDI	GACNNNNNNGTC	1 cut(s)	920
EaeI	YGGCCR	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	71
Eco47III	AGCGCT	1 cut(s)	477
Eco57I	CTGAAG	3 cut(s)	210, 246, 456
Eco72I	CACGTG	2 cut(s)	704, 722
Eco88I	CYCGRG	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	599
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	3 cut(s)	737, 786, 914
FalI	AAGNNNNNCTT	3 cut(s)	32, 945, 977
FaqI	GGGAC	2 cut(s)	625, 744
FatI	CATG	3 cut(s)	733, 782, 910
FauNDI	CATATG	1 cut(s)	85
FbaI	TGATCA	2 cut(s)	261, 543
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	846
FokI	GGATG	2 cut(s)	313, 989
Fsp4HI	GCNGC	1 cut(s)	846
FspBI	CTAG	4 cut(s)	158, 485, 633, 917
GlaI	GCGC	2 cut(s)	207, 477
GluI	GCNGC	1 cut(s)	846
GsuI	CTGGAG	1 cut(s)	524
HaeII	RGCGCY	2 cut(s)	209, 479
HaeIII	GGCC	2 cut(s)	120, 604
HhaI	GCGC	2 cut(s)	208, 478
Hin1I	GRCGYC	1 cut(s)	921
Hin1II	CATG	3 cut(s)	737, 786, 914
Hin6I	GCGC	2 cut(s)	206, 476
HinP1I	GCGC	2 cut(s)	206, 476
HincII	GTYRAC	3 cut(s)	247, 772, 925
HindII	GTYRAC	3 cut(s)	247, 772, 925
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	5 cut(s)	451, 522, 798, 869, 886
Hpy166II	GTNNAC	4 cut(s)	32, 247, 772, 925
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	6 cut(s)	265, 428, 586, 626, 911, 989
Hpy8I	GTNNAC	4 cut(s)	32, 247, 772, 925
HpyAV	CCTTC	3 cut(s)	221, 541, 896
HpyCH4IV	ACGT	5 cut(s)	12, 685, 703, 721, 921
HpyCH4V	TGCA	9 cut(s)	131, 198, 222, 419, 556, 671, 716, 757, 938
HpyF3I	CTNAG	3 cut(s)	250, 564, 966
HpySE526I	ACGT	5 cut(s)	12, 685, 703, 721, 921
Hsp92I	GRCGYC	1 cut(s)	921
Hsp92II	CATG	3 cut(s)	737, 786, 914
HspAI	GCGC	2 cut(s)	206, 476
Ksp22I	TGATCA	2 cut(s)	261, 543
Kzo9I	GATC	8 cut(s)	88, 261, 346, 394, 441, 543, 691, 739
Lsp1109I	GCAGC	1 cut(s)	857
LweI	GCATC	3 cut(s)	428, 744, 967
MaeI	CTAG	4 cut(s)	158, 485, 633, 917
MaeII	ACGT	5 cut(s)	12, 685, 703, 721, 921
MaeIII	GTNAC	2 cut(s)	362, 833
MalI	GATC	8 cut(s)	90, 263, 348, 396, 443, 545, 693, 741
MboI	GATC	8 cut(s)	88, 261, 346, 394, 441, 543, 691, 739
MboII	GAAGA	3 cut(s)	20, 443, 911
MfeI	CAATTG	1 cut(s)	933
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	5 cut(s)	22, 296, 338, 850, 933
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	3 cut(s)	445, 878, 880
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	8 cut(s)	160, 265, 293, 571, 622, 852, 899, 949
Mox20I	TGGCCA	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	2 cut(s)	93, 137
Msp20I	TGGCCA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	601
MunI	CAATTG	1 cut(s)	933
MvaI	CCWGG	1 cut(s)	601
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	8 cut(s)	88, 261, 346, 394, 441, 543, 691, 739
NlaIII	CATG	3 cut(s)	737, 786, 914
PagI	TCATGA	1 cut(s)	910
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	522, 798
PkrI	GCNGC	1 cut(s)	847
PleI	GAGTC	3 cut(s)	445, 877, 880
PmaCI	CACGTG	2 cut(s)	704, 722
PmlI	CACGTG	2 cut(s)	704, 722
PpsI	GAGTC	3 cut(s)	445, 877, 880
Ppu21I	YACGTR	2 cut(s)	704, 722
Psp6I	CCWGG	1 cut(s)	599
PspCI	CACGTG	2 cut(s)	704, 722
PspGI	CCWGG	1 cut(s)	599
PspPI	GGNCC	2 cut(s)	71, 603
PstNI	CAGNNNCTG	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	3 cut(s)	325, 688, 815
RsaNI	GTAC	3 cut(s)	324, 687, 814
SaqAI	TTAA	2 cut(s)	93, 137
SatI	GCNGC	1 cut(s)	846
Sau3AI	GATC	8 cut(s)	88, 261, 346, 394, 441, 543, 691, 739
Sau96I	GGNCC	2 cut(s)	71, 603
SchI	GAGTC	3 cut(s)	445, 878, 880
ScrFI	CCNGG	1 cut(s)	601
SfaNI	GCATC	3 cut(s)	428, 744, 967
SfcI	CTRYAG	3 cut(s)	111, 409, 787
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	331, 354
SmoI	CTYRAG	2 cut(s)	331, 354
SpeI	ACTAGT	1 cut(s)	157
Sse9I	AATT	5 cut(s)	22, 296, 338, 850, 933
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	4 cut(s)	158, 485, 633, 917
StyD4I	CCNGG	1 cut(s)	599
StyI	CCWWGG	1 cut(s)	386
TaiI	ACGT	5 cut(s)	15, 688, 706, 724, 924
TasI	AATT	5 cut(s)	22, 296, 338, 850, 933
TfiI	GAWTC	2 cut(s)	522, 798
Tru1I	TTAA	2 cut(s)	93, 137
Tru9I	TTAA	2 cut(s)	93, 137
TscAI	CASTG	2 cut(s)	229, 613
TseI	GCWGC	1 cut(s)	845
TspDTI	ATGAA	4 cut(s)	331, 662, 790, 792
TspRI	CASTG	2 cut(s)	229, 613
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	2 cut(s)	296, 338
XmiI	GTMKAC	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	4 cut(s)	158, 485, 633, 917
ZraI	GACGTC	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.