Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010284

Physical Location & Seq

Genomic Coordinates Forward (+)

15063600 .. 15064827

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0092400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAGCAGATTGTTATGAGGATGAGAGAGAAGCATTTTATGCTGTTTGTGTTATTTCTTTGCTTATTATTACCAATCTGTACCTCATCATCCCCATCTCCACCCCATTCTTACAACCCTACCCAAAACCCGGTCGCCAAGAAGCATTTCGTGCTGGTTCACGGAGCCGGTCACGGGGCATGGTGTTGGTACAAGGTGGCAACTCTGCTGAAACAGTCAGGCCACAACGTTACCACTCTGGACCTTGCAGCATCTGGAATTGACCCAACTCAGATACAACAAGTTCGTTCTTTCGCGGTTTACGTTGAACCGTTGACGAATTTCATGGAGTCTCTCCCGCCAAAGGAGAGGGTTGTTCTGGTTGGCCACAGCTTGGGTGGAGTAGCCTTATCTATTACCATGGAGAGGTTCCCTCAGAAAATTTCTGTTGCAGTTTTTGCCACCGCTGCCATGCCTGGTCCTGATATCAGTTTCTTGACTATACTTCAAGAGTTTAGCAGTCATTTGGATTTTATGGACTCTCAATATAGATTTGATGATGGCGCCACCAAACCTGCAACCTCGGTACTCTTGGGGCCGGAGGTGCTAGCCTCATCGTTCTACCAGCTATCGCCACCAGAGGATTTAACACTAGCGGTCACACTGGTGAGATTTGCCCCTCTTATTACAGAAGAACTGAAATTCACAAAGCATCGATATGGATCGGTTCGTAAAGTATACATTTTGTGCGACCAAGACCATGCAATAAAGGTGGATCTTGCAATGTTGATGATCAACAAAAATCCACCGGATGAAGTCAAGGTGATAAATGGTTCTGATCACATGGTCATGCTCTCCAGACCACTCGAGCTTTTCTCCAACATCCTACAAATTGCTGAGAAATACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0009295 GO:0009507 GO:0009536 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseA_C DNA_topoisoIV

Protein Analysis

296

Amino Acids

33.02

Weight (kDa)

6.59

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	46 - 153	3.1e-11	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	49 - 280	3.3e-18	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	50 - 285	7.5e-23	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10690
fragaria_vesca	FvH4_7g05000 FvH4_7g05000
malus_domestica	MD02G1265100.v1.1 MD07G1054300.v1.1
prunus_persica	Prupe.2G060900_v2.0.a1 Prupe.2G060900_v2.0.a1
pyrus_communis	pycom02g22650 pycom07g04200
rosa_chinensis	RchiOBHm_Chr1g0331271
rosa_laevigata	RLG00000029745
rosa_multiflora	Rmu_co8191516.1_g000001 Rmu_sc0000597.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319250
rosa_rugosa	Rorug01G0092400 Rorug01G0092500
rosa_samantha	Rh1AG117100 Rh1BG087900 Rh1CG112100 Rh1DG120900
rosa_wichuraiana	Rw1G009370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	542
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	1 cut(s)	296
AciI	CCGC	4 cut(s)	296, 338, 444, 635
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	2 cut(s)	709, 762
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	3 cut(s)	319, 420, 680
AcyI	GRCGYC	1 cut(s)	543
AfaI	GTAC	3 cut(s)	82, 191, 567
AfiI	CCNNNNNNNGG	5 cut(s)	130, 174, 343, 373, 405
AgsI	TTSAA	2 cut(s)	308, 488
AjnI	CCWGG	1 cut(s)	454
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	3 cut(s)	372, 607, 850
AluI	AGCT	3 cut(s)	372, 607, 850
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	2 cut(s)	709, 762
AlwNI	CAGNNNCTG	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	845
AoxI	GGCC	3 cut(s)	220, 364, 575
ApeKI	GCWGC	2 cut(s)	248, 446
ApoI	RAATTY	3 cut(s)	319, 420, 680
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	3 cut(s)	241, 458, 575
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	658, 814
AsuNHI	GCTAGC	1 cut(s)	586
AvaI	CYCGRG	1 cut(s)	845
AvaII	GGWCC	2 cut(s)	241, 458
BalI	TGGCCA	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	260, 433
BccI	CCATC	2 cut(s)	103, 533
BciT130I	CCWGG	1 cut(s)	456
BclI	TGATCA	2 cut(s)	771, 817
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	2 cut(s)	587, 632
BfoI	RGCGCY	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	2 cut(s)	249, 447
BlsI	GCNGC	2 cut(s)	250, 448
Bme1390I	CCNGG	2 cut(s)	131, 456
Bme18I	GGWCC	2 cut(s)	241, 458
BmeT110I	CYCGRG	1 cut(s)	845
BmgT120I	GGNCC	3 cut(s)	241, 458, 575
BmiI	GGNNCC	4 cut(s)	166, 410, 544, 576
BmrFI	CCNGG	2 cut(s)	131, 456
BmsI	GCATC	2 cut(s)	260, 700
BmtI	GCTAGC	1 cut(s)	590
BplI	GAGNNNNNCTC	5 cut(s)	397, 429, 839, 871, 869
BpmI	CTGGAG	1 cut(s)	820
BpuMI	CCSGG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	694
BsaBI	GATNNNNATC	1 cut(s)	700
BsaHI	GRCGYC	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	399, 561
BsaWI	WCCGGW	1 cut(s)	787
Bsc4I	CCNNNNNNNGG	5 cut(s)	130, 174, 343, 373, 405
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	648
Bse3DI	GCAATG	1 cut(s)	768
Bse8I	GATNNNNATC	1 cut(s)	700
BseBI	CCWGG	1 cut(s)	456
BseCI	ATCGAT	1 cut(s)	694
BseDI	CCNNGG	2 cut(s)	399, 561
BseGI	GGATG	4 cut(s)	27, 89, 796, 861
BseJI	GATNNNNATC	1 cut(s)	700
BseLI	CCNNNNNNNGG	5 cut(s)	130, 174, 343, 373, 405
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	3 cut(s)	284, 428, 867
BseNI	ACTGG	1 cut(s)	648
BseXI	GCAGC	2 cut(s)	260, 433
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	222, 366, 577
BshNI	GGYRCC	1 cut(s)	542
BshVI	ATCGAT	1 cut(s)	694
BsiEI	CGRYCG	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	845
BsiSI	CCGG	4 cut(s)	131, 168, 578, 788
BslI	CCNNNNNNNGG	5 cut(s)	130, 174, 343, 373, 405
BsmAI	GTCTC	1 cut(s)	336
BsnI	GGCC	3 cut(s)	222, 366, 577
BsoBI	CYCGRG	1 cut(s)	845
Bsp143I	GATC	4 cut(s)	701, 754, 771, 817
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	4 cut(s)	296, 338, 444, 635
BspANI	GGCC	3 cut(s)	222, 366, 577
BspCNI	CTCAG	3 cut(s)	283, 427, 868
BspDI	ATCGAT	1 cut(s)	694
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	4 cut(s)	166, 410, 544, 576
BspMI	ACCTGC	1 cut(s)	562
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	2 cut(s)	709, 762
BspT107I	GGYRCC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	768
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	648
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	399, 561
BssMI	GATC	4 cut(s)	701, 754, 771, 817
BssNAI	GTATAC	1 cut(s)	718
BssNI	GRCGYC	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	399
Bst1107I	GTATAC	1 cut(s)	718
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	216, 312
BstACI	GRCGYC	1 cut(s)	543
BstAPI	GCANNNNNTGC	3 cut(s)	40, 151, 437
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	3 cut(s)	270, 414, 876
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	4 cut(s)	27, 89, 796, 861
BstFNI	CGCG	1 cut(s)	296
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	4 cut(s)	704, 757, 774, 820
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	4 cut(s)	701, 754, 771, 817
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 151, 437, 446, 583
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	129, 454
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	260, 433
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BstZ17I	GTATAC	1 cut(s)	718
Bsu15I	ATCGAT	1 cut(s)	694
BsuRI	GGCC	3 cut(s)	222, 366, 577
BsuTUI	ATCGAT	1 cut(s)	694
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	4 cut(s)	27, 89, 796, 861
BtsIMutI	CAGTG	1 cut(s)	641
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	1 cut(s)	588
CaiI	CAGNNNCTG	1 cut(s)	254
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	241, 458, 575
ClaI	ATCGAT	1 cut(s)	694
Csp6I	GTAC	3 cut(s)	81, 190, 566
CspCI	CAANNNNNGTGG	2 cut(s)	732, 767
CviAII	CATG	7 cut(s)	180, 325, 400, 451, 740, 823, 829
CviJI	RGCY	9 cut(s)	167, 222, 366, 372, 386, 577, 590, 607, 850
CviKI_1	RGCY	9 cut(s)	167, 222, 366, 372, 386, 577, 590, 607, 850
CviQI	GTAC	3 cut(s)	81, 190, 566
DdeI	CTNAG	3 cut(s)	270, 414, 876
DinI	GGCGCC	1 cut(s)	544
DpnI	GATC	4 cut(s)	703, 756, 773, 819
DpnII	GATC	4 cut(s)	701, 754, 771, 817
EaeI	YGGCCR	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	241, 458
Eco88I	CYCGRG	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	399
EgeI	GGCGCC	1 cut(s)	544
EheI	GGCGCC	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	7 cut(s)	183, 328, 403, 454, 743, 826, 832
FatI	CATG	7 cut(s)	179, 324, 399, 450, 739, 822, 828
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	2 cut(s)	771, 817
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	2 cut(s)	249, 447
FokI	GGATG	4 cut(s)	34, 76, 803, 848
Fsp4HI	GCNGC	2 cut(s)	249, 447
FspBI	CTAG	2 cut(s)	587, 632
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	2 cut(s)	249, 447
GsuI	CTGGAG	1 cut(s)	820
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	222, 366, 577
HapII	CCGG	4 cut(s)	131, 168, 578, 788
HhaI	GCGC	1 cut(s)	545
Hin1I	GRCGYC	1 cut(s)	543
Hin1II	CATG	7 cut(s)	183, 328, 403, 454, 743, 826, 832
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	2 cut(s)	329, 518
HpaII	CCGG	4 cut(s)	131, 168, 578, 788
HphI	GGTGA	2 cut(s)	658, 814
Hpy166II	GTNNAC	4 cut(s)	160, 301, 315, 718
Hpy188I	TCNGA	3 cut(s)	273, 417, 817
Hpy188III	TCNNGA	6 cut(s)	239, 255, 461, 475, 488, 837
Hpy8I	GTNNAC	4 cut(s)	160, 301, 315, 718
HpyCH4III	ACNGT	2 cut(s)	216, 312
HpyCH4IV	ACGT	2 cut(s)	228, 303
HpyCH4V	TGCA	5 cut(s)	248, 431, 557, 743, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 151, 437, 446, 583
HpyF3I	CTNAG	3 cut(s)	270, 414, 876
HpySE526I	ACGT	2 cut(s)	228, 303
Hsp92I	GRCGYC	1 cut(s)	543
Hsp92II	CATG	7 cut(s)	183, 328, 403, 454, 743, 826, 832
HspAI	GCGC	1 cut(s)	543
KasI	GGCGCC	1 cut(s)	542
Ksp22I	TGATCA	2 cut(s)	771, 817
Kzo9I	GATC	4 cut(s)	701, 754, 771, 817
LmnI	GCTCC	2 cut(s)	4, 164
Lsp1109I	GCAGC	2 cut(s)	260, 433
LweI	GCATC	2 cut(s)	260, 700
MaeI	CTAG	2 cut(s)	587, 632
MaeII	ACGT	2 cut(s)	228, 303
MaeIII	GTNAC	3 cut(s)	170, 229, 637
MalI	GATC	4 cut(s)	703, 756, 773, 819
MboI	GATC	4 cut(s)	701, 754, 771, 817
MboII	GAAGA	1 cut(s)	683
MflI	RGATCY	1 cut(s)	754
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	5 cut(s)	258, 319, 420, 680, 870
MluNI	TGGCCA	1 cut(s)	366
Mly113I	GGCGCC	1 cut(s)	543
MlyI	GAGTC	2 cut(s)	338, 512
MmeI	TCCRAC	1 cut(s)	882
Mox20I	TGGCCA	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	1 cut(s)	626
MslI	CAYNNNNRTG	3 cut(s)	644, 696, 827
Msp20I	TGGCCA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	4 cut(s)	131, 168, 578, 788
MspR9I	CCNGG	2 cut(s)	131, 456
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	5 cut(s)	40, 151, 437, 446, 583
NarI	GGCGCC	1 cut(s)	543
NciI	CCSGG	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	4 cut(s)	701, 754, 771, 817
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	7 cut(s)	183, 328, 403, 454, 743, 826, 832
NlaIV	GGNNCC	4 cut(s)	166, 410, 544, 576
NmuCI	GTSAC	2 cut(s)	170, 637
OliI	CACNNNNGTG	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	845
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	250, 448
PleI	GAGTC	2 cut(s)	337, 512
PluTI	GGCGCC	1 cut(s)	546
PpsI	GAGTC	2 cut(s)	337, 512
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	4 cut(s)	166, 410, 544, 576
PspPI	GGNCC	3 cut(s)	241, 458, 575
PspXI	VCTCGAGB	1 cut(s)	845
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	3 cut(s)	82, 191, 567
RsaNI	GTAC	3 cut(s)	81, 190, 566
RseI	CAYNNNNRTG	3 cut(s)	644, 696, 827
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	2 cut(s)	249, 447
Sau3AI	GATC	4 cut(s)	701, 754, 771, 817
Sau96I	GGNCC	3 cut(s)	241, 458, 575
SchI	GAGTC	2 cut(s)	338, 512
ScrFI	CCNGG	2 cut(s)	131, 456
SfaNI	GCATC	2 cut(s)	260, 700
SfoI	GGCGCC	1 cut(s)	544
Sfr274I	CTCGAG	1 cut(s)	845
SinI	GGWCC	2 cut(s)	241, 458
SlaI	CTCGAG	1 cut(s)	845
SmiMI	CAYNNNNRTG	3 cut(s)	644, 696, 827
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	5 cut(s)	258, 319, 420, 680, 870
SsiI	CCGC	4 cut(s)	296, 338, 444, 635
SspDI	GGCGCC	1 cut(s)	542
SspMI	CTAG	2 cut(s)	587, 632
StyD4I	CCNGG	2 cut(s)	129, 454
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	216, 312
TaiI	ACGT	2 cut(s)	231, 306
TaqI	TCGA	2 cut(s)	694, 846
TasI	AATT	5 cut(s)	258, 319, 420, 680, 870
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	2 cut(s)	170, 637
TseI	GCWGC	2 cut(s)	248, 446
Tsp45I	GTSAC	2 cut(s)	170, 637
TspDTI	ATGAA	2 cut(s)	313, 807
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	648
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	241, 458
XapI	RAATTY	3 cut(s)	319, 420, 680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	845
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	2 cut(s)	587, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.