Rmu_co8239791.1_g000001
ERF Family

Transmembrane 9 superfamily member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8239791.1
OG0003988
Physical Location & Seq
Forward (+)
106 .. 693
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8239791.1_g000001.1.cds

Sequence Viewer

Length: 588 bp
atgttttcaatgctgctcttgtggtttgggatatcagtgccattagtatttgtaggcagttacttggggttcaaacagcaagcaattgaggatccagtcaataccaatgaaatcgcaagacaaataccagtgcgagcatggtacaacataaagatggtcttgtctgtgctcatcggaggcattctacagttcggagtagtgttcgttgagttcttctttatgtggacatccatatggatgaataagttctactactctttcgggttcctcttaatagtctttgtcatccttctagtcacctgttgtgagatagcaattctactctgctacttccaacttcgcagcgaagattaccattggtggtggagagcatacttgactgccggctcctctgctctgtacatgtttgcatactccattttccttttcttcaccaggctgtggattgaaaagtttgtttctgtcatcctttattttgggtacatgttaattgcatcctttgcgttctttgtcttgactgggacaatcggcttctatgcatgcttctggtttgttaggaagatctactcctctgtcaagtttgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EMP70

Protein Analysis

195

Amino Acids

23.12

Weight (kDa)

8.64

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 441
AclWI GGATC 2 cut(s) 86, 99
AfaI GTAC 3 cut(s) 143, 401, 482
AfiI CCNNNNNNNGG 1 cut(s) 441
AflIII ACRYGT 2 cut(s) 402, 483
AgsI TTSAA 3 cut(s) 9, 73, 449
AjnI CCWGG 1 cut(s) 434
Alw21I GWGCWC 1 cut(s) 171
AlwI GGATC 2 cut(s) 86, 99
ApeKI GCWGC 2 cut(s) 13, 342
Asp700I GAANNNNTTC 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 289, 424
BamHI GGATCC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 354
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 436
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 185
BglII AGATCT 1 cut(s) 561
BisI GCNGC 2 cut(s) 14, 343
BlsI GCNGC 2 cut(s) 15, 344
Bme1390I CCNGG 1 cut(s) 436
BmiI GGNNCC 3 cut(s) 93, 266, 388
BmrFI CCNGG 1 cut(s) 436
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 1 cut(s) 503
BmuI ACTGGG 1 cut(s) 528
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 3 cut(s) 95, 128, 523
BseBI CCWGG 1 cut(s) 436
BseGI GGATG 5 cut(s) 227, 243, 285, 465, 494
BseLI CCNNNNNNNGG 1 cut(s) 441
BseNI ACTGG 3 cut(s) 95, 128, 523
BseRI GAGGAG 2 cut(s) 379, 559
BseXI GCAGC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 384
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 535
BsmI GAATGC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 2 cut(s) 91, 561
BspLI GGNNCC 3 cut(s) 93, 266, 388
BspPI GGATC 2 cut(s) 86, 99
BsrFI RCCGGY 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 3 cut(s) 95, 128, 523
BssAI RCCGGY 1 cut(s) 383
BssMI GATC 2 cut(s) 91, 561
Bst2UI CCWGG 1 cut(s) 436
Bst4CI ACNGT 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 500
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 4 cut(s) 81, 135, 385, 541
BstF5I GGATG 5 cut(s) 227, 243, 285, 465, 494
BstKTI GATC 2 cut(s) 94, 564
BstMBI GATC 2 cut(s) 91, 561
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 1 cut(s) 436
BstNSI RCATGY 3 cut(s) 406, 487, 543
BstSCI CCNGG 1 cut(s) 434
BstSFI CTRYAG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 354
BstX2I RGATCY 2 cut(s) 91, 561
BstYI RGATCY 2 cut(s) 91, 561
BtsCI GGATG 5 cut(s) 227, 243, 285, 465, 494
BtsIMutI CAGTG 2 cut(s) 42, 135
Cac8I GCNNGC 4 cut(s) 81, 135, 385, 541
Cfr10I RCCGGY 1 cut(s) 383
Csp6I GTAC 3 cut(s) 142, 400, 481
CviAII CATG 4 cut(s) 138, 403, 484, 540
CviJI RGCY 3 cut(s) 387, 439, 531
CviKI_1 RGCY 3 cut(s) 387, 439, 531
CviQI GTAC 3 cut(s) 142, 400, 481
DpnI GATC 2 cut(s) 93, 563
DpnII GATC 2 cut(s) 91, 561
Eco32I GATATC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 434
EcoRV GATATC 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 541
FaeI CATG 4 cut(s) 141, 406, 487, 543
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 535
FatI CATG 4 cut(s) 137, 402, 483, 539
FauNDI CATATG 1 cut(s) 233
Fnu4HI GCNGC 2 cut(s) 14, 343
FokI GGATG 5 cut(s) 214, 250, 272, 452, 481
Fsp4HI GCNGC 2 cut(s) 14, 343
FspBI CTAG 1 cut(s) 293
GluI GCNGC 2 cut(s) 14, 343
HapII CCGG 1 cut(s) 384
Hin1II CATG 4 cut(s) 141, 406, 487, 543
HpaII CCGG 1 cut(s) 384
HphI GGTGA 2 cut(s) 289, 424
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 176, 194
Hpy188III TCNNGA 1 cut(s) 514
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 410, 494, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
Hsp92II CATG 4 cut(s) 141, 406, 487, 543
KroI GCCGGC 1 cut(s) 383
KroNI GCCGGC 1 cut(s) 385
Kzo9I GATC 2 cut(s) 91, 561
LmnI GCTCC 1 cut(s) 392
LpnPI CCDG 8 cut(s) 108, 141, 313, 397, 421, 448, 504, 532
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 503
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 59, 295
MalI GATC 2 cut(s) 93, 563
MboI GATC 2 cut(s) 91, 561
MboII GAAGA 4 cut(s) 205, 359, 421, 571
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 2 cut(s) 91, 561
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 3 cut(s) 84, 315, 489
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 5 cut(s) 82, 170, 278, 400, 580
Mph1103I ATGCAT 1 cut(s) 541
MroNI GCCGGC 1 cut(s) 383
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 2 cut(s) 272, 488
MslI CAYNNNNRTG 3 cut(s) 152, 232, 236
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 436
MunI CAATTG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 1 cut(s) 436
MwoI GCNNNNNNNGC 1 cut(s) 500
NaeI GCCGGC 1 cut(s) 385
NdeI CATATG 1 cut(s) 233
NdeII GATC 2 cut(s) 91, 561
NgoMIV GCCGGC 1 cut(s) 383
NlaIII CATG 4 cut(s) 141, 406, 487, 543
NlaIV GGNNCC 3 cut(s) 93, 266, 388
NmuCI GTSAC 1 cut(s) 295
NsiI ATGCAT 1 cut(s) 541
NspI RCATGY 3 cut(s) 406, 487, 543
PaeI GCATGC 1 cut(s) 543
PciI ACATGT 2 cut(s) 402, 483
PctI GAATGC 1 cut(s) 180
PdiI GCCGGC 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 441
PkrI GCNGC 2 cut(s) 15, 344
PscI ACATGT 2 cut(s) 402, 483
Psp6I CCWGG 1 cut(s) 434
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 3 cut(s) 93, 266, 388
PsuI RGATCY 2 cut(s) 91, 561
RsaI GTAC 3 cut(s) 143, 401, 482
RsaNI GTAC 3 cut(s) 142, 400, 481
RseI CAYNNNNRTG 3 cut(s) 152, 232, 236
SaqAI TTAA 2 cut(s) 272, 488
SatI GCNGC 2 cut(s) 14, 343
Sau3AI GATC 2 cut(s) 91, 561
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 1 cut(s) 171
SetI ASST 1 cut(s) 302
SfaNI GCATC 1 cut(s) 503
SfcI CTRYAG 1 cut(s) 185
SmiMI CAYNNNNRTG 3 cut(s) 152, 232, 236
SphI GCATGC 1 cut(s) 543
Sse9I AATT 3 cut(s) 84, 315, 489
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 434
TaaI ACNGT 1 cut(s) 189
TasI AATT 3 cut(s) 84, 315, 489
TatI WGTACW 1 cut(s) 399
Tru1I TTAA 2 cut(s) 272, 488
Tru9I TTAA 2 cut(s) 272, 488
TscAI CASTG 2 cut(s) 42, 135
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 13, 342
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 123, 254
TspRI CASTG 2 cut(s) 42, 135
Van91I CCANNNNNTGG 1 cut(s) 441
XceI RCATGY 3 cut(s) 406, 487, 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.