Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019982.1

Orthogroup ID

OG0003988

Physical Location & Seq

Genomic Coordinates Reverse (-)

3788 .. 4570

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019982.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggttctttcgtggatgttcatgggcttatttgggggatactactcggcacacttgtacaagatgttcaaaggcacggaatggaagaagattgcattaaagacagcctttatgtttcctgttacattgattggaattttcttcatattgaatgccttgatttgggaggagaaatcctgtggttcagtgccactggggacaatgtttaccctggtactcttgtggtctggaatatcggcgccattggttttcttaggcagctactttggcttcaaaatgtcaccaattgatgatcctatcaaaactaatgaaattccaagacagattcctgagcgaccatggcacaacataaagcggctcttgtctatgctatttggaagcattgtaccatttaatgtagtgctcactgagttcctctctatctggacgtctatatggccagaccaatactctttcgggttcctcttcatggcctttgttatacttctagtcacttgttccgagatggctattctactgtgctacttccaacttcgcagcgaagattacaattggtggtggagagcatacctgactattggctcttctggtctgtacatgttttcatactccatattctatttcttcaccaacatggagattgaaaagtttgtttctgtcatcctttatttcgggtacatgttaatgggatcctttgtattctttgtcctaacggggacaataggcttcggtgcgtgcttctggtttgttaggaagatctattcttctgtgaagtttgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

260

Amino Acids

30.36

Weight (kDa)

8.57

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003988)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07460 FvH4_1g07460 FvH4_1g07460 FvH4_1g07460 FvH4_1g07460 FvH4_1g07460 FvH4_1g07470 FvH4_1g07480
rosa_chinensis	RchiOBHm_Chr2g0093361 RchiOBHm_Chr2g0093371 RchiOBHm_Chr2g0093381
rosa_laevigata	RLG00000016393 RLG00000016394
rosa_multiflora	Rmu_co8239791.1_g000001 Rmu_sc0005227.1_g000010 Rmu_sc0005227.1_g000011 Rmu_sc0005227.1_g000014 Rmu_sc0019982.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148150 Rroxscaffold_2G00148160
rosa_rugosa	Rorug02G0035000 Rorug02G0035000
rosa_samantha	Rh2AG081200 Rh2AG081300 Rh2BG082300 Rh2BG082500 Rh2BG082600 Rh2CG084500 Rh2CG084600 Rh2DG080200 Rh2DG080300
rosa_wichuraiana	Rw2G006530 Rw2G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	238
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	3 cut(s)	287, 684, 697
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	2 cut(s)	135, 312
AcyI	GRCGYC	2 cut(s)	239, 428
AfaI	GTAC	5 cut(s)	59, 216, 387, 596, 677
AfiI	CCNNNNNNNGG	2 cut(s)	162, 469
AflIII	ACRYGT	2 cut(s)	597, 678
AgsI	TTSAA	4 cut(s)	70, 151, 274, 644
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw21I	GWGCWC	1 cut(s)	405
AlwI	GGATC	3 cut(s)	287, 684, 697
AoxI	GGCC	2 cut(s)	437, 471
ApeKI	GCWGC	2 cut(s)	258, 537
ApoI	RAATTY	2 cut(s)	135, 312
AspLEI	GCGC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	273, 619
BaeI	ACNNNNGTAYC	2 cut(s)	206, 239
BalI	TGGCCA	1 cut(s)	439
BamHI	GGATCC	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	270, 549
BccI	CCATC	1 cut(s)	499
BciT130I	CCWGG	1 cut(s)	212
BciVI	GTATCC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	488
BfoI	RGCGCY	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	32
BglII	AGATCT	1 cut(s)	756
BisI	GCNGC	3 cut(s)	259, 356, 538
BlsI	GCNGC	3 cut(s)	260, 357, 539
Bme1390I	CCNGG	1 cut(s)	212
BmiI	GGNNCC	3 cut(s)	240, 461, 691
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	203
BmuI	ACTGGG	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
Bpu10I	CCTNAGC	1 cut(s)	330
BsaHI	GRCGYC	2 cut(s)	239, 428
BsaJI	CCNNGG	2 cut(s)	210, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 469
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	210, 338
BseGI	GGATG	2 cut(s)	21, 660
BseLI	CCNNNNNNNGG	2 cut(s)	162, 469
BseMII	CTCAG	2 cut(s)	321, 399
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	270, 549
BshFI	GGCC	2 cut(s)	439, 473
BshNI	GGYRCC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	405
BslFI	GGGAC	2 cut(s)	211, 730
BslI	CCNNNNNNNGG	2 cut(s)	162, 469
BsmFI	GGGAC	2 cut(s)	211, 730
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	439, 473
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp1407I	TGTACA	2 cut(s)	57, 594
Bsp143I	GATC	3 cut(s)	292, 689, 756
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	439, 473
BspCNI	CTCAG	2 cut(s)	322, 400
BspLI	GGNNCC	3 cut(s)	240, 461, 691
BspPI	GGATC	3 cut(s)	287, 684, 697
BspQI	GCTCTTC	1 cut(s)	589
BspT107I	GGYRCC	1 cut(s)	238
BsrGI	TGTACA	2 cut(s)	57, 594
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	210, 338
BssMI	GATC	3 cut(s)	292, 689, 756
BssNI	GRCGYC	2 cut(s)	239, 428
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	519
Bst6I	CTCTTC	2 cut(s)	470, 589
BstACI	GRCGYC	2 cut(s)	239, 428
BstAUI	TGTACA	2 cut(s)	57, 594
BstC8I	GCNNGC	1 cut(s)	736
BstDEI	CTNAG	3 cut(s)	253, 330, 408
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	21, 660
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	3 cut(s)	295, 692, 759
BstMBI	GATC	3 cut(s)	292, 689, 756
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 340
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	2 cut(s)	601, 682
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	270, 549
BstX2I	RGATCY	2 cut(s)	689, 756
BstYI	RGATCY	2 cut(s)	689, 756
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	439, 473
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	21, 660
BtsIMutI	CAGTG	3 cut(s)	191, 192, 405
Cac8I	GCNNGC	1 cut(s)	736
CfoI	GCGC	1 cut(s)	241
Csp6I	GTAC	5 cut(s)	58, 215, 386, 595, 676
CviAII	CATG	6 cut(s)	22, 339, 469, 598, 634, 679
CviQI	GTAC	5 cut(s)	58, 215, 386, 595, 676
DdeI	CTNAG	3 cut(s)	253, 330, 408
DinI	GGCGCC	1 cut(s)	240
DpnI	GATC	3 cut(s)	294, 691, 758
DpnII	GATC	3 cut(s)	292, 689, 756
EaeI	YGGCCR	1 cut(s)	437
Eam1104I	CTCTTC	2 cut(s)	470, 589
EarI	CTCTTC	2 cut(s)	470, 589
Eco130I	CCWWGG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	338
EgeI	GGCGCC	1 cut(s)	240
EheI	GGCGCC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	6 cut(s)	25, 342, 472, 601, 637, 682
FalI	AAGNNNNNCTT	4 cut(s)	92, 124, 344, 376
FaqI	GGGAC	2 cut(s)	211, 730
FatI	CATG	6 cut(s)	21, 338, 468, 597, 633, 678
Fnu4HI	GCNGC	3 cut(s)	259, 356, 538
FokI	GGATG	2 cut(s)	28, 647
Fsp4HI	GCNGC	3 cut(s)	259, 356, 538
FspBI	CTAG	1 cut(s)	488
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	3 cut(s)	259, 356, 538
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	439, 473
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	2 cut(s)	239, 428
Hin1II	CATG	6 cut(s)	25, 342, 472, 601, 637, 682
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	1 cut(s)	325
HphI	GGTGA	2 cut(s)	273, 619
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	3 cut(s)	228, 329, 424
Hpy8I	GTNNAC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 340
HpyF3I	CTNAG	3 cut(s)	253, 330, 408
HpySE526I	ACGT	1 cut(s)	428
Hsp92I	GRCGYC	2 cut(s)	239, 428
Hsp92II	CATG	6 cut(s)	25, 342, 472, 601, 637, 682
HspAI	GCGC	1 cut(s)	239
KasI	GGCGCC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	292, 689, 756
LguI	GCTCTTC	1 cut(s)	589
Lsp1109I	GCAGC	2 cut(s)	270, 549
MaeI	CTAG	1 cut(s)	488
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	3 cut(s)	121, 279, 490
MalI	GATC	3 cut(s)	294, 691, 758
MboI	GATC	3 cut(s)	292, 689, 756
MboII	GAAGA	9 cut(s)	97, 100, 133, 457, 554, 576, 616, 756, 766
MfeI	CAATTG	2 cut(s)	285, 550
MflI	RGATCY	2 cut(s)	689, 756
MhlI	GDGCHC	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	439
MluCI	AATT	4 cut(s)	135, 285, 312, 550
MluNI	TGGCCA	1 cut(s)	439
Mly113I	GGCGCC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	3 cut(s)	160, 425, 473
Mox20I	TGGCCA	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	439
MseI	TTAA	3 cut(s)	98, 393, 683
MslI	CAYNNNNRTG	2 cut(s)	632, 683
Msp20I	TGGCCA	1 cut(s)	439
MspR9I	CCNGG	1 cut(s)	212
MunI	CAATTG	2 cut(s)	285, 550
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	267, 340
NarI	GGCGCC	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	3 cut(s)	292, 689, 756
NlaIII	CATG	6 cut(s)	25, 342, 472, 601, 637, 682
NlaIV	GGNNCC	3 cut(s)	240, 461, 691
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	279, 490
NspI	RCATGY	2 cut(s)	601, 682
PciI	ACATGT	2 cut(s)	597, 678
PciSI	GCTCTTC	1 cut(s)	589
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	260, 357, 539
PluTI	GGCGCC	1 cut(s)	242
PscI	ACATGT	2 cut(s)	597, 678
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	3 cut(s)	240, 461, 691
PsrI	GAACNNNNNNTAC	2 cut(s)	50, 82
PsuI	RGATCY	2 cut(s)	689, 756
RsaI	GTAC	5 cut(s)	59, 216, 387, 596, 677
RsaNI	GTAC	5 cut(s)	58, 215, 386, 595, 676
RseI	CAYNNNNRTG	2 cut(s)	632, 683
SapI	GCTCTTC	1 cut(s)	589
SaqAI	TTAA	3 cut(s)	98, 393, 683
SatI	GCNGC	3 cut(s)	259, 356, 538
Sau3AI	GATC	3 cut(s)	292, 689, 756
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	3 cut(s)	263, 431, 573
SfoI	GGCGCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	632, 683
Sse9I	AATT	4 cut(s)	135, 285, 312, 550
SsiI	CCGC	1 cut(s)	355
SspDI	GGCGCC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	519
TaiI	ACGT	1 cut(s)	431
TasI	AATT	4 cut(s)	135, 285, 312, 550
TatI	WGTACW	2 cut(s)	57, 594
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	3 cut(s)	98, 393, 683
Tru9I	TTAA	3 cut(s)	98, 393, 683
TscAI	CASTG	3 cut(s)	192, 198, 412
TseFI	GTSAC	2 cut(s)	279, 490
TseI	GCWGC	2 cut(s)	258, 537
Tsp45I	GTSAC	2 cut(s)	279, 490
TspDTI	ATGAA	5 cut(s)	10, 133, 324, 457, 594
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	3 cut(s)	192, 198, 412
XapI	RAATTY	2 cut(s)	135, 312
XceI	RCATGY	2 cut(s)	601, 682
XspI	CTAG	1 cut(s)	488
ZraI	GACGTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.