Rmu_sc0005227.1_g000010

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005227.1
Physical Location & Seq
Reverse (-)
37709 .. 39847
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005227.1_g000010.1.cds

Sequence Viewer

Length: 1854 bp
atggttgtggtgcgaactctttacagggatatcaacagctacaatcagttggagacccaagatgaggctcaggaactaacaggatggaaactagtccatgcagatgttttcaggccaccccccaacgctaatttattgtgtgtttgtgttgggaatggtgtccaattctttgggacgatgctcatcacgatcatatttggtctgcttggtttcctttcaccttcgaacagaggtgggttgatcacagcaatggttctttcgtggatgttcatgggcttatttgggggatactactcagcgcacttgtacaagatgttcaaaggcccgcaatggaagaagattgcattaaagacagcctttatgtttcctgttacattgattggaattttcttcatattgaatgccttgatttgggaggagaaatcctgtggttcagtgccactggggacaatgtttaccctggtactcttgtggtctggaatatcggcgccattggttttcttaggcagctactttggcttcaaaatgtcaccaattgatgatcctatcaaaactaatgaaattccaagacagattcctgagcgaccatggcacaacataaagcggctcttgtctatgctatttggaagcattctaccatttaatgtagtgctcactgagttcctctctatctggacgtctatatggccagaccaatactctttcgggttcctcttcatggcctttgttatacttctagtcacttgttccgagatggctattctactgtgctacttccaacttcgcagcgaagattacaattggtggtggagagcatacctgactattggctcttctggtctgtacatgttttcatactccatattctatttcttcaccaacatggagattgaaaagtttgtttctgtcatcctttatttcgggtacatgttaatgggatcctttgtattctttgtcctaacggggacaataggcttcgcatcttgtggttttctacaagttttcattgttacttcagagtctatattgtggcctctttcaccttcgaacagaggtgggttgatcacagcaatggttctttcgtggatgttcatgggcttatttgggggatactactcagcgcacttgtacaagatgttcaaaggcccgcaatggaagaagattgcattaaagacagcctttatgtttcctgttacattgattggaattttcttcatattgaatgccttgatttgggaggagaaatcctgtggttcagtgccactggggacaatgtttaccctggtactcttgtggtctggaatatcggcgccattggttttcttaggcagctactttggcttcaaaatgtcaccaattgatgatcctatcaaaactaatgaaattccaagacagattcctgagcgaccatggcacaacataaagcggctcttgtctatgctatttggaagcattgtaccatttaatgtagtgctcactgagttcctctctatctggacgtctatatggccagaccaatactctttcgggttcctcttcatggcctttgttatacttctagtcacttgttccgagatggctattctactgtgctacttccaacttcgcagcgaagattacaattggtggtggagagcatacctgactattggctcttctggtctgtacatgttttcatactccatattctatttcttcaccaacatggagattgaaaagtttgtttctgtcatcctttatttcgggtacatgttaatgggatcctttgtattctttgtcctaacggggacaataggcttcggtgcgtgcttctggtttgttaggaagatctattcttctgtgaagtttgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

617

Amino Acids

71.06

Weight (kDa)

8.51

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 680, 1502
AccB1I GGYRCC 2 cut(s) 487, 1309
AciI CCGC 4 cut(s) 326, 604, 1148, 1426
AclWI GGATC 6 cut(s) 536, 933, 946, 1358, 1755, 1768
AcoI YGGCCR 2 cut(s) 686, 1508
AcsI RAATTY 4 cut(s) 384, 561, 1206, 1383
AcuI CTGAAG 1 cut(s) 999
AcyI GRCGYC 4 cut(s) 488, 677, 1310, 1499
AfaI GTAC 9 cut(s) 308, 465, 845, 926, 1130, 1287, 1458, 1667, 1748
AfiI CCNNNNNNNGG 5 cut(s) 64, 411, 718, 1233, 1540
AflIII ACRYGT 4 cut(s) 846, 927, 1668, 1749
AgsI TTSAA 8 cut(s) 319, 400, 523, 893, 1141, 1222, 1345, 1715
AhlI ACTAGT 1 cut(s) 91
AjnI CCWGG 2 cut(s) 459, 1281
AluBI AGCT 3 cut(s) 39, 510, 1332
AluI AGCT 3 cut(s) 39, 510, 1332
Alw21I GWGCWC 2 cut(s) 654, 1476
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 6 cut(s) 536, 933, 946, 1358, 1755, 1768
AoxI GGCC 8 cut(s) 113, 322, 686, 720, 1031, 1144, 1508, 1542
ApeKI GCWGC 4 cut(s) 507, 786, 1329, 1608
ApoI RAATTY 4 cut(s) 384, 561, 1206, 1383
AspLEI GCGC 4 cut(s) 301, 490, 1123, 1312
AspS9I GGNCC 2 cut(s) 323, 1145
AsuHPI GGTGA 6 cut(s) 210, 522, 868, 1032, 1344, 1690
AsuII TTCGAA 2 cut(s) 224, 1046
BaeI ACNNNNGTAYC 4 cut(s) 455, 488, 1277, 1310
BalI TGGCCA 2 cut(s) 688, 1510
BamHI GGATCC 2 cut(s) 938, 1760
BanI GGYRCC 2 cut(s) 487, 1309
Bbv12I GWGCWC 2 cut(s) 654, 1476
BbvI GCAGC 4 cut(s) 519, 798, 1341, 1620
BccI CCATC 3 cut(s) 78, 748, 1570
BciT130I CCWGG 2 cut(s) 461, 1283
BciVI GTATCC 2 cut(s) 281, 1103
BclI TGATCA 2 cut(s) 240, 1062
BcoDI GTCTC 1 cut(s) 47
BcuI ACTAGT 1 cut(s) 91
BfaI CTAG 3 cut(s) 92, 737, 1559
BfoI RGCGCY 2 cut(s) 491, 1313
BfuI GTATCC 2 cut(s) 281, 1103
BglII AGATCT 1 cut(s) 1827
BisI GCNGC 6 cut(s) 508, 605, 787, 1330, 1427, 1609
BlsI GCNGC 6 cut(s) 509, 606, 788, 1331, 1428, 1610
Bme1390I CCNGG 2 cut(s) 461, 1283
BmgT120I GGNCC 2 cut(s) 323, 1145
BmiI GGNNCC 6 cut(s) 489, 710, 940, 1311, 1532, 1762
BmrFI CCNGG 2 cut(s) 461, 1283
BmrI ACTGGG 2 cut(s) 452, 1274
BmsI GCATC 2 cut(s) 168, 989
BmuI ACTGGG 2 cut(s) 452, 1274
BplI GAGNNNNNCTC 4 cut(s) 650, 682, 1472, 1504
Bpu10I CCTNAGC 3 cut(s) 69, 579, 1401
Bpu14I TTCGAA 2 cut(s) 224, 1046
BsaBI GATNNNNATC 1 cut(s) 182
BsaHI GRCGYC 4 cut(s) 488, 677, 1310, 1499
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 4 cut(s) 459, 587, 1281, 1409
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 411, 718, 1233, 1540
Bse1I ACTGG 2 cut(s) 447, 1269
Bse3DI GCAATG 4 cut(s) 255, 335, 1077, 1157
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 2 cut(s) 461, 1283
BseDI CCNNGG 4 cut(s) 459, 587, 1281, 1409
BseGI GGATG 5 cut(s) 89, 270, 909, 1092, 1731
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 5 cut(s) 64, 411, 718, 1233, 1540
BseMI GCAATG 4 cut(s) 255, 335, 1077, 1157
BseMII CTCAG 7 cut(s) 83, 309, 570, 648, 1131, 1392, 1470
BseNI ACTGG 2 cut(s) 447, 1269
BseRI GAGGAG 2 cut(s) 431, 1253
BseXI GCAGC 4 cut(s) 519, 798, 1341, 1620
BshFI GGCC 8 cut(s) 115, 324, 688, 722, 1033, 1146, 1510, 1544
BshNI GGYRCC 2 cut(s) 487, 1309
BsiHKAI GWGCWC 2 cut(s) 654, 1476
BslFI GGGAC 5 cut(s) 187, 460, 979, 1282, 1801
BslI CCNNNNNNNGG 5 cut(s) 64, 411, 718, 1233, 1540
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 5 cut(s) 187, 460, 979, 1282, 1801
BsmI GAATGC 3 cut(s) 406, 630, 1228
BsnI GGCC 8 cut(s) 115, 324, 688, 722, 1033, 1146, 1510, 1544
Bso31I GGTCTC 1 cut(s) 47
Bsp119I TTCGAA 2 cut(s) 224, 1046
Bsp1286I GDGCHC 2 cut(s) 654, 1476
Bsp1407I TGTACA 4 cut(s) 306, 843, 1128, 1665
Bsp143I GATC 8 cut(s) 189, 240, 541, 938, 1062, 1363, 1760, 1827
Bsp19I CCATGG 2 cut(s) 587, 1409
BspACI CCGC 4 cut(s) 326, 604, 1148, 1426
BspANI GGCC 8 cut(s) 115, 324, 688, 722, 1033, 1146, 1510, 1544
BspCNI CTCAG 7 cut(s) 82, 308, 571, 649, 1130, 1393, 1471
BspLI GGNNCC 6 cut(s) 489, 710, 940, 1311, 1532, 1762
BspPI GGATC 6 cut(s) 536, 933, 946, 1358, 1755, 1768
BspQI GCTCTTC 2 cut(s) 838, 1660
BspT104I TTCGAA 2 cut(s) 224, 1046
BspT107I GGYRCC 2 cut(s) 487, 1309
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 4 cut(s) 255, 335, 1077, 1157
BsrGI TGTACA 4 cut(s) 306, 843, 1128, 1665
BsrI ACTGG 2 cut(s) 447, 1269
BssECI CCNNGG 4 cut(s) 459, 587, 1281, 1409
BssMI GATC 8 cut(s) 189, 240, 541, 938, 1062, 1363, 1760, 1827
BssNI GRCGYC 4 cut(s) 488, 677, 1310, 1499
BssT1I CCWWGG 2 cut(s) 587, 1409
Bst2UI CCWGG 2 cut(s) 461, 1283
Bst4CI ACNGT 2 cut(s) 768, 1590
Bst6I CTCTTC 4 cut(s) 719, 838, 1541, 1660
BstACI GRCGYC 4 cut(s) 488, 677, 1310, 1499
BstAUI TGTACA 4 cut(s) 306, 843, 1128, 1665
BstBI TTCGAA 2 cut(s) 224, 1046
BstC8I GCNNGC 3 cut(s) 326, 1148, 1807
BstDEI CTNAG 9 cut(s) 69, 295, 502, 579, 657, 1117, 1324, 1401, 1479
BstDSI CCRYGG 2 cut(s) 587, 1409
BstF5I GGATG 5 cut(s) 89, 270, 909, 1092, 1731
BstH2I RGCGCY 2 cut(s) 491, 1313
BstHHI GCGC 4 cut(s) 301, 490, 1123, 1312
BstKTI GATC 8 cut(s) 192, 243, 544, 941, 1065, 1366, 1763, 1830
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 8 cut(s) 189, 240, 541, 938, 1062, 1363, 1760, 1827
BstMWI GCNNNNNNNGC 4 cut(s) 516, 589, 1338, 1411
BstNI CCWGG 2 cut(s) 461, 1283
BstNSI RCATGY 4 cut(s) 850, 931, 1672, 1753
BstSCI CCNGG 2 cut(s) 459, 1281
BstV1I GCAGC 4 cut(s) 519, 798, 1341, 1620
BstX2I RGATCY 3 cut(s) 938, 1760, 1827
BstXI CCANNNNNNTGG 1 cut(s) 170
BstYI RGATCY 3 cut(s) 938, 1760, 1827
BsuI GTATCC 2 cut(s) 281, 1103
BsuRI GGCC 8 cut(s) 115, 324, 688, 722, 1033, 1146, 1510, 1544
BtgI CCRYGG 2 cut(s) 587, 1409
BtsCI GGATG 5 cut(s) 89, 270, 909, 1092, 1731
BtsIMutI CAGTG 6 cut(s) 440, 441, 654, 1262, 1263, 1476
Cac8I GCNNGC 3 cut(s) 326, 1148, 1807
CfoI GCGC 4 cut(s) 301, 490, 1123, 1312
Cfr13I GGNCC 2 cut(s) 323, 1145
Csp6I GTAC 9 cut(s) 307, 464, 844, 925, 1129, 1286, 1457, 1666, 1747
CviQI GTAC 9 cut(s) 307, 464, 844, 925, 1129, 1286, 1457, 1666, 1747
DdeI CTNAG 9 cut(s) 69, 295, 502, 579, 657, 1117, 1324, 1401, 1479
DinI GGCGCC 2 cut(s) 489, 1311
DpnI GATC 8 cut(s) 191, 242, 543, 940, 1064, 1365, 1762, 1829
DpnII GATC 8 cut(s) 189, 240, 541, 938, 1062, 1363, 1760, 1827
EaeI YGGCCR 2 cut(s) 686, 1508
Eam1104I CTCTTC 4 cut(s) 719, 838, 1541, 1660
EarI CTCTTC 4 cut(s) 719, 838, 1541, 1660
Eco130I CCWWGG 2 cut(s) 587, 1409
Eco31I GGTCTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 999
EcoRII CCWGG 2 cut(s) 459, 1281
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 2 cut(s) 587, 1409
EgeI GGCGCC 2 cut(s) 489, 1311
EheI GGCGCC 2 cut(s) 489, 1311
ErhI CCWWGG 2 cut(s) 587, 1409
FalI AAGNNNNNCTT 8 cut(s) 341, 373, 593, 625, 1163, 1195, 1415, 1447
FaqI GGGAC 5 cut(s) 187, 460, 979, 1282, 1801
FauI CCCGC 2 cut(s) 333, 1155
FbaI TGATCA 2 cut(s) 240, 1062
Fnu4HI GCNGC 6 cut(s) 508, 605, 787, 1330, 1427, 1609
FokI GGATG 5 cut(s) 96, 277, 896, 1099, 1718
Fsp4HI GCNGC 6 cut(s) 508, 605, 787, 1330, 1427, 1609
FspBI CTAG 3 cut(s) 92, 737, 1559
GlaI GCGC 4 cut(s) 300, 489, 1122, 1311
GluI GCNGC 6 cut(s) 508, 605, 787, 1330, 1427, 1609
HaeII RGCGCY 2 cut(s) 491, 1313
HaeIII GGCC 8 cut(s) 115, 324, 688, 722, 1033, 1146, 1510, 1544
HhaI GCGC 4 cut(s) 301, 490, 1123, 1312
Hin1I GRCGYC 4 cut(s) 488, 677, 1310, 1499
Hin6I GCGC 4 cut(s) 299, 488, 1121, 1310
HinP1I GCGC 4 cut(s) 299, 488, 1121, 1310
HinfI GANTC 3 cut(s) 574, 1019, 1396
HphI GGTGA 6 cut(s) 210, 522, 868, 1032, 1344, 1690
Hpy166II GTNNAC 2 cut(s) 456, 1278
Hpy188I TCNGA 3 cut(s) 751, 1018, 1573
Hpy188III TCNNGA 8 cut(s) 71, 187, 477, 578, 673, 1299, 1400, 1495
Hpy8I GTNNAC 2 cut(s) 456, 1278
HpyAV CCTTC 2 cut(s) 231, 1053
HpyCH4III ACNGT 2 cut(s) 768, 1590
HpyCH4IV ACGT 2 cut(s) 677, 1499
HpyCH4V TGCA 3 cut(s) 101, 344, 1166
HpyF10VI GCNNNNNNNGC 4 cut(s) 516, 589, 1338, 1411
HpyF3I CTNAG 9 cut(s) 69, 295, 502, 579, 657, 1117, 1324, 1401, 1479
HpySE526I ACGT 2 cut(s) 677, 1499
Hsp92I GRCGYC 4 cut(s) 488, 677, 1310, 1499
HspAI GCGC 4 cut(s) 299, 488, 1121, 1310
KasI GGCGCC 2 cut(s) 487, 1309
Ksp22I TGATCA 2 cut(s) 240, 1062
Kzo9I GATC 8 cut(s) 189, 240, 541, 938, 1062, 1363, 1760, 1827
LguI GCTCTTC 2 cut(s) 838, 1660
Lsp1109I GCAGC 4 cut(s) 519, 798, 1341, 1620
LweI GCATC 2 cut(s) 168, 989
MaeI CTAG 3 cut(s) 92, 737, 1559
MaeII ACGT 2 cut(s) 677, 1499
MaeIII GTNAC 7 cut(s) 370, 528, 739, 1009, 1192, 1350, 1561
MalI GATC 8 cut(s) 191, 242, 543, 940, 1064, 1365, 1762, 1829
MboI GATC 8 cut(s) 189, 240, 541, 938, 1062, 1363, 1760, 1827
MfeI CAATTG 4 cut(s) 534, 799, 1356, 1621
MflI RGATCY 3 cut(s) 938, 1760, 1827
MhlI GDGCHC 2 cut(s) 654, 1476
MlsI TGGCCA 2 cut(s) 688, 1510
MluNI TGGCCA 2 cut(s) 688, 1510
Mly113I GGCGCC 2 cut(s) 488, 1310
MlyI GAGTC 1 cut(s) 1028
MmeI TCCRAC 3 cut(s) 30, 802, 1624
Mox20I TGGCCA 2 cut(s) 688, 1510
MscI TGGCCA 2 cut(s) 688, 1510
MseI TTAA 6 cut(s) 347, 642, 932, 1169, 1464, 1754
MslI CAYNNNNRTG 7 cut(s) 102, 248, 881, 932, 1070, 1703, 1754
Msp20I TGGCCA 2 cut(s) 688, 1510
MspR9I CCNGG 2 cut(s) 461, 1283
MunI CAATTG 4 cut(s) 534, 799, 1356, 1621
Mva1269I GAATGC 3 cut(s) 406, 630, 1228
MvaI CCWGG 2 cut(s) 461, 1283
MwoI GCNNNNNNNGC 4 cut(s) 516, 589, 1338, 1411
NarI GGCGCC 2 cut(s) 488, 1310
NcoI CCATGG 2 cut(s) 587, 1409
NdeII GATC 8 cut(s) 189, 240, 541, 938, 1062, 1363, 1760, 1827
NlaIV GGNNCC 6 cut(s) 489, 710, 940, 1311, 1532, 1762
NmuCI GTSAC 4 cut(s) 528, 739, 1350, 1561
NspI RCATGY 4 cut(s) 850, 931, 1672, 1753
NspV TTCGAA 2 cut(s) 224, 1046
PciI ACATGT 4 cut(s) 846, 927, 1668, 1749
PciSI GCTCTTC 2 cut(s) 838, 1660
PctI GAATGC 3 cut(s) 406, 630, 1228
PfeI GAWTC 2 cut(s) 574, 1396
PkrI GCNGC 6 cut(s) 509, 606, 788, 1331, 1428, 1610
PleI GAGTC 1 cut(s) 1027
PluTI GGCGCC 2 cut(s) 491, 1313
PpsI GAGTC 1 cut(s) 1027
PscI ACATGT 4 cut(s) 846, 927, 1668, 1749
Psp6I CCWGG 2 cut(s) 459, 1281
PspGI CCWGG 2 cut(s) 459, 1281
PspN4I GGNNCC 6 cut(s) 489, 710, 940, 1311, 1532, 1762
PspPI GGNCC 2 cut(s) 323, 1145
PsrI GAACNNNNNNTAC 4 cut(s) 299, 331, 1121, 1153
PsuI RGATCY 3 cut(s) 938, 1760, 1827
RsaI GTAC 9 cut(s) 308, 465, 845, 926, 1130, 1287, 1458, 1667, 1748
RsaNI GTAC 9 cut(s) 307, 464, 844, 925, 1129, 1286, 1457, 1666, 1747
RseI CAYNNNNRTG 7 cut(s) 102, 248, 881, 932, 1070, 1703, 1754
SapI GCTCTTC 2 cut(s) 838, 1660
SaqAI TTAA 6 cut(s) 347, 642, 932, 1169, 1464, 1754
SatI GCNGC 6 cut(s) 508, 605, 787, 1330, 1427, 1609
Sau3AI GATC 8 cut(s) 189, 240, 541, 938, 1062, 1363, 1760, 1827
Sau96I GGNCC 2 cut(s) 323, 1145
SchI GAGTC 1 cut(s) 1028
ScrFI CCNGG 2 cut(s) 461, 1283
SduI GDGCHC 2 cut(s) 654, 1476
SfaNI GCATC 2 cut(s) 168, 989
SfoI GGCGCC 2 cut(s) 489, 1311
SfuI TTCGAA 2 cut(s) 224, 1046
SmiMI CAYNNNNRTG 7 cut(s) 102, 248, 881, 932, 1070, 1703, 1754
SpeI ACTAGT 1 cut(s) 91
SsiI CCGC 4 cut(s) 326, 604, 1148, 1426
SspDI GGCGCC 2 cut(s) 487, 1309
SspMI CTAG 3 cut(s) 92, 737, 1559
StyD4I CCNGG 2 cut(s) 459, 1281
StyI CCWWGG 2 cut(s) 587, 1409
TaaI ACNGT 2 cut(s) 768, 1590
TaiI ACGT 2 cut(s) 680, 1502
TaqI TCGA 2 cut(s) 224, 1046
TatI WGTACW 4 cut(s) 306, 843, 1128, 1665
TauI GCSGC 2 cut(s) 607, 1429
TfiI GAWTC 2 cut(s) 574, 1396
Tru1I TTAA 6 cut(s) 347, 642, 932, 1169, 1464, 1754
Tru9I TTAA 6 cut(s) 347, 642, 932, 1169, 1464, 1754
TscAI CASTG 6 cut(s) 441, 447, 661, 1263, 1269, 1483
TseFI GTSAC 4 cut(s) 528, 739, 1350, 1561
TseI GCWGC 4 cut(s) 507, 786, 1329, 1608
Tsp45I GTSAC 4 cut(s) 528, 739, 1350, 1561
TspRI CASTG 6 cut(s) 441, 447, 661, 1263, 1269, 1483
XapI RAATTY 4 cut(s) 384, 561, 1206, 1383
XceI RCATGY 4 cut(s) 850, 931, 1672, 1753
XspI CTAG 3 cut(s) 92, 737, 1559
ZraI GACGTC 2 cut(s) 678, 1500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.