Transmembrane 9 superfamily member
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g07460 FvH4_1g07460 FvH4_1g07460 FvH4_1g07460 FvH4_1g07460 FvH4_1g07460 FvH4_1g07470 FvH4_1g07480 |
| rosa_chinensis | RchiOBHm_Chr2g0093361 RchiOBHm_Chr2g0093371 RchiOBHm_Chr2g0093381 |
| rosa_laevigata | RLG00000016393 RLG00000016394 |
| rosa_multiflora | Rmu_co8239791.1_g000001 Rmu_sc0005227.1_g000010 Rmu_sc0005227.1_g000011 Rmu_sc0005227.1_g000014 Rmu_sc0019982.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00148150 Rroxscaffold_2G00148160 |
| rosa_rugosa | Rorug02G0035000 Rorug02G0035000 |
| rosa_samantha | Rh2AG081200 Rh2AG081300 Rh2BG082300 Rh2BG082500 Rh2BG082600 Rh2CG084500 Rh2CG084600 Rh2DG080200 Rh2DG080300 |
| rosa_wichuraiana | Rw2G006530 Rw2G006550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1491 |
| AccII | CGCG | 1 cut(s) | 511 |
| AccIII | TCCGGA | 1 cut(s) | 596 |
| AclWI | GGATC | 5 cut(s) | 278, 291, 536, 1136, 1149 |
| AcuI | CTGAAG | 1 cut(s) | 694 |
| AfaI | GTAC | 8 cut(s) | 332, 350, 775, 908, 1048, 1193, 1451, 1532 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 835, 882, 1491 |
| AflIII | ACRYGT | 2 cut(s) | 1452, 1533 |
| AgsI | TTSAA | 7 cut(s) | 416, 634, 674, 1000, 1059, 1123, 1499 |
| AjnI | CCWGG | 1 cut(s) | 1484 |
| AluBI | AGCT | 2 cut(s) | 184, 379 |
| AluI | AGCT | 2 cut(s) | 184, 379 |
| Alw21I | GWGCWC | 3 cut(s) | 401, 588, 1221 |
| Alw26I | GTCTC | 2 cut(s) | 284, 656 |
| AlwI | GGATC | 5 cut(s) | 278, 291, 536, 1136, 1149 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 293 |
| Ama87I | CYCGRG | 1 cut(s) | 153 |
| Aor13HI | TCCGGA | 1 cut(s) | 596 |
| AoxI | GGCC | 2 cut(s) | 713, 873 |
| ApeKI | GCWGC | 2 cut(s) | 1063, 1392 |
| AseI | ATTAAT | 1 cut(s) | 339 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1004, 1295 |
| AspA2I | CCTAGG | 1 cut(s) | 532 |
| AspLEI | GCGC | 1 cut(s) | 901 |
| AspS9I | GGNCC | 1 cut(s) | 694 |
| AsuHPI | GGTGA | 7 cut(s) | 98, 377, 548, 810, 850, 1339, 1474 |
| AsuII | TTCGAA | 1 cut(s) | 824 |
| AvaI | CYCGRG | 1 cut(s) | 153 |
| AvaII | GGWCC | 1 cut(s) | 694 |
| AvrII | CCTAGG | 1 cut(s) | 532 |
| BamHI | GGATCC | 2 cut(s) | 283, 1141 |
| BauI | CACGAG | 1 cut(s) | 344 |
| BbsI | GAAGAC | 3 cut(s) | 377, 700, 997 |
| Bbv12I | GWGCWC | 3 cut(s) | 401, 588, 1221 |
| BbvI | GCAGC | 2 cut(s) | 1050, 1404 |
| BccI | CCATC | 4 cut(s) | 77, 678, 728, 1198 |
| BceAI | ACGGC | 3 cut(s) | 18, 313, 1024 |
| BciT130I | CCWGG | 1 cut(s) | 1486 |
| BciVI | GTATCC | 1 cut(s) | 881 |
| BcoDI | GTCTC | 2 cut(s) | 284, 656 |
| BfaI | CTAG | 2 cut(s) | 533, 1343 |
| BfmI | CTRYAG | 2 cut(s) | 1032, 1235 |
| BfuI | GTATCC | 1 cut(s) | 881 |
| BglII | AGATCT | 1 cut(s) | 1611 |
| BisI | GCNGC | 2 cut(s) | 1064, 1393 |
| BlnI | CCTAGG | 1 cut(s) | 532 |
| BlsI | GCNGC | 2 cut(s) | 1065, 1394 |
| Bme1390I | CCNGG | 1 cut(s) | 1486 |
| Bme18I | GGWCC | 1 cut(s) | 694 |
| BmeT110I | CYCGRG | 1 cut(s) | 153 |
| BmgT120I | GGNCC | 1 cut(s) | 694 |
| BmiI | GGNNCC | 4 cut(s) | 285, 1143, 1316, 1438 |
| BmrFI | CCNGG | 1 cut(s) | 1486 |
| BmrI | ACTGGG | 1 cut(s) | 1578 |
| BmsI | GCATC | 2 cut(s) | 37, 1553 |
| BmuI | ACTGGG | 1 cut(s) | 1578 |
| BpiI | GAAGAC | 3 cut(s) | 377, 700, 997 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 136, 168 |
| BpmI | CTGGAG | 1 cut(s) | 240 |
| Bpu14I | TTCGAA | 1 cut(s) | 824 |
| Bsa29I | ATCGAT | 1 cut(s) | 81 |
| BsaI | GGTCTC | 1 cut(s) | 656 |
| BsaJI | CCNNGG | 3 cut(s) | 532, 697, 829 |
| BsaWI | WCCGGW | 1 cut(s) | 596 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 835, 882, 1491 |
| Bse118I | RCCGGY | 1 cut(s) | 1433 |
| Bse1I | ACTGG | 6 cut(s) | 48, 489, 696, 1145, 1178, 1573 |
| Bse3DI | GCAATG | 2 cut(s) | 800, 855 |
| BseAI | TCCGGA | 1 cut(s) | 596 |
| BseBI | CCWGG | 1 cut(s) | 1486 |
| BseCI | ATCGAT | 1 cut(s) | 81 |
| BseDI | CCNNGG | 3 cut(s) | 532, 697, 829 |
| BseGI | GGATG | 8 cut(s) | 52, 689, 870, 1277, 1293, 1335, 1515, 1544 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 835, 882, 1491 |
| BseMI | GCAATG | 2 cut(s) | 800, 855 |
| BseMII | CTCAG | 1 cut(s) | 248 |
| BseNI | ACTGG | 6 cut(s) | 48, 489, 696, 1145, 1178, 1573 |
| BseRI | GAGGAG | 3 cut(s) | 1034, 1429, 1609 |
| BseXI | GCAGC | 2 cut(s) | 1050, 1404 |
| BseYI | CCCAGC | 1 cut(s) | 805 |
| Bsh1236I | CGCG | 1 cut(s) | 511 |
| BshFI | GGCC | 2 cut(s) | 715, 875 |
| BshVI | ATCGAT | 1 cut(s) | 81 |
| BsiHKAI | GWGCWC | 3 cut(s) | 401, 588, 1221 |
| BsiHKCI | CYCGRG | 1 cut(s) | 153 |
| BsiSI | CCGG | 2 cut(s) | 597, 1434 |
| BslFI | GGGAC | 3 cut(s) | 222, 530, 1585 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 835, 882, 1491 |
| BsmAI | GTCTC | 2 cut(s) | 284, 656 |
| BsmFI | GGGAC | 3 cut(s) | 222, 530, 1585 |
| BsmI | GAATGC | 2 cut(s) | 924, 1230 |
| BsnI | GGCC | 2 cut(s) | 715, 875 |
| Bso31I | GGTCTC | 1 cut(s) | 656 |
| BsoBI | CYCGRG | 1 cut(s) | 153 |
| Bsp119I | TTCGAA | 1 cut(s) | 824 |
| Bsp1286I | GDGCHC | 3 cut(s) | 401, 588, 1221 |
| Bsp13I | TCCGGA | 1 cut(s) | 596 |
| Bsp1407I | TGTACA | 2 cut(s) | 906, 1449 |
| Bsp143I | GATC | 7 cut(s) | 78, 115, 167, 283, 541, 1141, 1611 |
| Bsp19I | CCATGG | 1 cut(s) | 697 |
| BspANI | GGCC | 2 cut(s) | 715, 875 |
| BspCNI | CTCAG | 1 cut(s) | 249 |
| BspDI | ATCGAT | 1 cut(s) | 81 |
| BspEI | TCCGGA | 1 cut(s) | 596 |
| BspFNI | CGCG | 1 cut(s) | 511 |
| BspHI | TCATGA | 1 cut(s) | 277 |
| BspLI | GGNNCC | 4 cut(s) | 285, 1143, 1316, 1438 |
| BspPI | GGATC | 5 cut(s) | 278, 291, 536, 1136, 1149 |
| BspQI | GCTCTTC | 1 cut(s) | 593 |
| BspT104I | TTCGAA | 1 cut(s) | 824 |
| BspTNI | GGTCTC | 1 cut(s) | 656 |
| BsrDI | GCAATG | 2 cut(s) | 800, 855 |
| BsrFI | RCCGGY | 1 cut(s) | 1433 |
| BsrGI | TGTACA | 2 cut(s) | 906, 1449 |
| BsrI | ACTGG | 6 cut(s) | 48, 489, 696, 1145, 1178, 1573 |
| BssAI | RCCGGY | 1 cut(s) | 1433 |
| BssECI | CCNNGG | 3 cut(s) | 532, 697, 829 |
| BssMI | GATC | 7 cut(s) | 78, 115, 167, 283, 541, 1141, 1611 |
| BssSI | CACGAG | 1 cut(s) | 344 |
| BssT1I | CCWWGG | 3 cut(s) | 532, 697, 829 |
| Bst2BI | CACGAG | 1 cut(s) | 344 |
| Bst2UI | CCWGG | 1 cut(s) | 1486 |
| Bst4CI | ACNGT | 5 cut(s) | 15, 335, 583, 778, 1239 |
| Bst6I | CTCTTC | 1 cut(s) | 593 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1550 |
| BstAUI | TGTACA | 2 cut(s) | 906, 1449 |
| BstBI | TTCGAA | 1 cut(s) | 824 |
| BstC8I | GCNNGC | 6 cut(s) | 31, 392, 1131, 1185, 1435, 1591 |
| BstDEI | CTNAG | 2 cut(s) | 257, 375 |
| BstDSI | CCRYGG | 1 cut(s) | 697 |
| BstF5I | GGATG | 8 cut(s) | 52, 689, 870, 1277, 1293, 1335, 1515, 1544 |
| BstFNI | CGCG | 1 cut(s) | 511 |
| BstHHI | GCGC | 1 cut(s) | 901 |
| BstKTI | GATC | 7 cut(s) | 81, 118, 170, 286, 544, 1144, 1614 |
| BstMAI | GTCTC | 2 cut(s) | 284, 656 |
| BstMBI | GATC | 7 cut(s) | 78, 115, 167, 283, 541, 1141, 1611 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 396, 1550 |
| BstNI | CCWGG | 1 cut(s) | 1486 |
| BstNSI | RCATGY | 5 cut(s) | 33, 390, 1456, 1537, 1593 |
| BstSCI | CCNGG | 1 cut(s) | 1484 |
| BstSFI | CTRYAG | 2 cut(s) | 1032, 1235 |
| BstUI | CGCG | 1 cut(s) | 511 |
| BstV1I | GCAGC | 2 cut(s) | 1050, 1404 |
| BstV2I | GAAGAC | 3 cut(s) | 377, 700, 997 |
| BstX2I | RGATCY | 3 cut(s) | 283, 1141, 1611 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 552, 770 |
| BstYI | RGATCY | 3 cut(s) | 283, 1141, 1611 |
| Bsu15I | ATCGAT | 1 cut(s) | 81 |
| BsuI | GTATCC | 1 cut(s) | 881 |
| BsuRI | GGCC | 2 cut(s) | 715, 875 |
| BsuTUI | ATCGAT | 1 cut(s) | 81 |
| BtgI | CCRYGG | 1 cut(s) | 697 |
| BtsCI | GGATG | 8 cut(s) | 52, 689, 870, 1277, 1293, 1335, 1515, 1544 |
| BtsIMutI | CAGTG | 5 cut(s) | 496, 783, 935, 1092, 1185 |
| Cac8I | GCNNGC | 6 cut(s) | 31, 392, 1131, 1185, 1435, 1591 |
| CaiI | CAGNNNCTG | 1 cut(s) | 293 |
| CciI | TCATGA | 1 cut(s) | 277 |
| CfoI | GCGC | 1 cut(s) | 901 |
| Cfr10I | RCCGGY | 1 cut(s) | 1433 |
| Cfr13I | GGNCC | 1 cut(s) | 694 |
| ClaI | ATCGAT | 1 cut(s) | 81 |
| Csp6I | GTAC | 8 cut(s) | 331, 349, 774, 907, 1047, 1192, 1450, 1531 |
| CviQI | GTAC | 8 cut(s) | 331, 349, 774, 907, 1047, 1192, 1450, 1531 |
| DdeI | CTNAG | 2 cut(s) | 257, 375 |
| DpnI | GATC | 7 cut(s) | 80, 117, 169, 285, 543, 1143, 1613 |
| DpnII | GATC | 7 cut(s) | 78, 115, 167, 283, 541, 1141, 1611 |
| DraI | TTTAAA | 2 cut(s) | 265, 919 |
| Eam1104I | CTCTTC | 1 cut(s) | 593 |
| EarI | CTCTTC | 1 cut(s) | 593 |
| Eco130I | CCWWGG | 3 cut(s) | 532, 697, 829 |
| Eco31I | GGTCTC | 1 cut(s) | 656 |
| Eco32I | GATATC | 2 cut(s) | 496, 1083 |
| Eco47I | GGWCC | 1 cut(s) | 694 |
| Eco57I | CTGAAG | 1 cut(s) | 694 |
| Eco88I | CYCGRG | 1 cut(s) | 153 |
| EcoRII | CCWGG | 1 cut(s) | 1484 |
| EcoRV | GATATC | 2 cut(s) | 496, 1083 |
| EcoT14I | CCWWGG | 3 cut(s) | 532, 697, 829 |
| EcoT22I | ATGCAT | 1 cut(s) | 1591 |
| ErhI | CCWWGG | 3 cut(s) | 532, 697, 829 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 929, 961, 941, 973, 1193, 1225 |
| FaqI | GGGAC | 3 cut(s) | 222, 530, 1585 |
| FauNDI | CATATG | 2 cut(s) | 469, 1283 |
| Fnu4HI | GCNGC | 2 cut(s) | 1064, 1393 |
| FokI | GGATG | 8 cut(s) | 59, 696, 877, 1264, 1300, 1322, 1502, 1531 |
| Fsp4HI | GCNGC | 2 cut(s) | 1064, 1393 |
| FspBI | CTAG | 2 cut(s) | 533, 1343 |
| GlaI | GCGC | 1 cut(s) | 900 |
| GluI | GCNGC | 2 cut(s) | 1064, 1393 |
| GsaI | CCCAGC | 1 cut(s) | 809 |
| GsuI | CTGGAG | 1 cut(s) | 240 |
| HaeIII | GGCC | 2 cut(s) | 715, 875 |
| HapII | CCGG | 2 cut(s) | 597, 1434 |
| HhaI | GCGC | 1 cut(s) | 901 |
| Hin6I | GCGC | 1 cut(s) | 899 |
| HinP1I | GCGC | 1 cut(s) | 899 |
| HincII | GTYRAC | 1 cut(s) | 100 |
| HindII | GTYRAC | 1 cut(s) | 100 |
| HindIII | AAGCTT | 2 cut(s) | 182, 377 |
| HinfI | GANTC | 6 cut(s) | 106, 439, 485, 506, 518, 1022 |
| HpaI | GTTAAC | 1 cut(s) | 100 |
| HpaII | CCGG | 2 cut(s) | 597, 1434 |
| HphI | GGTGA | 7 cut(s) | 98, 377, 548, 810, 850, 1339, 1474 |
| Hpy166II | GTNNAC | 2 cut(s) | 100, 1275 |
| Hpy188I | TCNGA | 3 cut(s) | 983, 1226, 1244 |
| Hpy188III | TCNNGA | 8 cut(s) | 110, 153, 155, 278, 287, 344, 597, 1564 |
| Hpy8I | GTNNAC | 2 cut(s) | 100, 1275 |
| HpyAV | CCTTC | 3 cut(s) | 410, 831, 1349 |
| HpyCH4III | ACNGT | 5 cut(s) | 15, 335, 583, 778, 1239 |
| HpyCH4IV | ACGT | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 8 cut(s) | 21, 29, 128, 134, 800, 1460, 1544, 1589 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 396, 1550 |
| HpyF3I | CTNAG | 2 cut(s) | 257, 375 |
| HpySE526I | ACGT | 1 cut(s) | 211 |
| HspAI | GCGC | 1 cut(s) | 899 |
| Kpn2I | TCCGGA | 1 cut(s) | 596 |
| KroI | GCCGGC | 1 cut(s) | 1433 |
| KroNI | GCCGGC | 1 cut(s) | 1435 |
| KspAI | GTTAAC | 1 cut(s) | 100 |
| Kzo9I | GATC | 7 cut(s) | 78, 115, 167, 283, 541, 1141, 1611 |
| LguI | GCTCTTC | 1 cut(s) | 593 |
| LmnI | GCTCC | 1 cut(s) | 1442 |
| Lsp1109I | GCAGC | 2 cut(s) | 1050, 1404 |
| LweI | GCATC | 2 cut(s) | 37, 1553 |
| MaeI | CTAG | 2 cut(s) | 533, 1343 |
| MaeII | ACGT | 1 cut(s) | 211 |
| MaeIII | GTNAC | 4 cut(s) | 322, 382, 1109, 1345 |
| MalI | GATC | 7 cut(s) | 80, 117, 169, 285, 543, 1143, 1613 |
| MboI | GATC | 7 cut(s) | 78, 115, 167, 283, 541, 1141, 1611 |
| MfeI | CAATTG | 1 cut(s) | 1134 |
| MflI | RGATCY | 3 cut(s) | 283, 1141, 1611 |
| MhlI | GDGCHC | 3 cut(s) | 401, 588, 1221 |
| MluCI | AATT | 7 cut(s) | 52, 456, 546, 568, 1134, 1365, 1539 |
| MlyI | GAGTC | 3 cut(s) | 494, 512, 1031 |
| MmeI | TCCRAC | 2 cut(s) | 639, 1408 |
| Mph1103I | ATGCAT | 1 cut(s) | 1591 |
| MroI | TCCGGA | 1 cut(s) | 596 |
| MroNI | GCCGGC | 1 cut(s) | 1433 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1004, 1295 |
| MslI | CAYNNNNRTG | 6 cut(s) | 447, 614, 702, 1202, 1282, 1286 |
| MspI | CCGG | 2 cut(s) | 597, 1434 |
| MspR9I | CCNGG | 1 cut(s) | 1486 |
| MunI | CAATTG | 1 cut(s) | 1134 |
| Mva1269I | GAATGC | 2 cut(s) | 924, 1230 |
| MvaI | CCWGG | 1 cut(s) | 1486 |
| MvnI | CGCG | 1 cut(s) | 511 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 396, 1550 |
| NaeI | GCCGGC | 1 cut(s) | 1435 |
| NcoI | CCATGG | 1 cut(s) | 697 |
| NdeI | CATATG | 2 cut(s) | 469, 1283 |
| NdeII | GATC | 7 cut(s) | 78, 115, 167, 283, 541, 1141, 1611 |
| NgoMIV | GCCGGC | 1 cut(s) | 1433 |
| NlaIV | GGNNCC | 4 cut(s) | 285, 1143, 1316, 1438 |
| NmeAIII | GCCGAG | 2 cut(s) | 420, 875 |
| NmuCI | GTSAC | 3 cut(s) | 322, 382, 1345 |
| NsiI | ATGCAT | 1 cut(s) | 1591 |
| NspI | RCATGY | 5 cut(s) | 33, 390, 1456, 1537, 1593 |
| NspV | TTCGAA | 1 cut(s) | 824 |
| PaeI | GCATGC | 2 cut(s) | 33, 1593 |
| PaeR7I | CTCGAG | 1 cut(s) | 153 |
| PagI | TCATGA | 1 cut(s) | 277 |
| PciI | ACATGT | 2 cut(s) | 1452, 1533 |
| PciSI | GCTCTTC | 1 cut(s) | 593 |
| PctI | GAATGC | 2 cut(s) | 924, 1230 |
| PdiI | GCCGGC | 1 cut(s) | 1435 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1004, 1295 |
| PfeI | GAWTC | 3 cut(s) | 106, 439, 506 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1491 |
| PkrI | GCNGC | 2 cut(s) | 1065, 1394 |
| PleI | GAGTC | 3 cut(s) | 493, 512, 1030 |
| PpsI | GAGTC | 3 cut(s) | 493, 512, 1030 |
| PscI | ACATGT | 2 cut(s) | 1452, 1533 |
| PshBI | ATTAAT | 1 cut(s) | 339 |
| Psp6I | CCWGG | 1 cut(s) | 1484 |
| PspFI | CCCAGC | 1 cut(s) | 805 |
| PspGI | CCWGG | 1 cut(s) | 1484 |
| PspN4I | GGNNCC | 4 cut(s) | 285, 1143, 1316, 1438 |
| PspPI | GGNCC | 1 cut(s) | 694 |
| PstNI | CAGNNNCTG | 1 cut(s) | 293 |
| PsuI | RGATCY | 3 cut(s) | 283, 1141, 1611 |
| RsaI | GTAC | 8 cut(s) | 332, 350, 775, 908, 1048, 1193, 1451, 1532 |
| RsaNI | GTAC | 8 cut(s) | 331, 349, 774, 907, 1047, 1192, 1450, 1531 |
| RseI | CAYNNNNRTG | 6 cut(s) | 447, 614, 702, 1202, 1282, 1286 |
| SapI | GCTCTTC | 1 cut(s) | 593 |
| SatI | GCNGC | 2 cut(s) | 1064, 1393 |
| Sau3AI | GATC | 7 cut(s) | 78, 115, 167, 283, 541, 1141, 1611 |
| Sau96I | GGNCC | 1 cut(s) | 694 |
| SchI | GAGTC | 3 cut(s) | 494, 512, 1031 |
| ScrFI | CCNGG | 1 cut(s) | 1486 |
| SduI | GDGCHC | 3 cut(s) | 401, 588, 1221 |
| SfaNI | GCATC | 2 cut(s) | 37, 1553 |
| SfcI | CTRYAG | 2 cut(s) | 1032, 1235 |
| Sfr274I | CTCGAG | 1 cut(s) | 153 |
| SfuI | TTCGAA | 1 cut(s) | 824 |
| SinI | GGWCC | 1 cut(s) | 694 |
| SlaI | CTCGAG | 1 cut(s) | 153 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 447, 614, 702, 1202, 1282, 1286 |
| SmlI | CTYRAG | 1 cut(s) | 153 |
| SmoI | CTYRAG | 1 cut(s) | 153 |
| SphI | GCATGC | 2 cut(s) | 33, 1593 |
| Sse9I | AATT | 7 cut(s) | 52, 456, 546, 568, 1134, 1365, 1539 |
| SspI | AATATT | 1 cut(s) | 987 |
| SspMI | CTAG | 2 cut(s) | 533, 1343 |
| StyD4I | CCNGG | 1 cut(s) | 1484 |
| StyI | CCWWGG | 3 cut(s) | 532, 697, 829 |
| TaaI | ACNGT | 5 cut(s) | 15, 335, 583, 778, 1239 |
| TaiI | ACGT | 1 cut(s) | 214 |
| TaqI | TCGA | 5 cut(s) | 81, 138, 154, 166, 824 |
| TasI | AATT | 7 cut(s) | 52, 456, 546, 568, 1134, 1365, 1539 |
| TatI | WGTACW | 3 cut(s) | 348, 906, 1449 |
| TfiI | GAWTC | 3 cut(s) | 106, 439, 506 |
| TscAI | CASTG | 5 cut(s) | 496, 783, 935, 1092, 1185 |
| TseFI | GTSAC | 3 cut(s) | 322, 382, 1345 |
| TseI | GCWGC | 2 cut(s) | 1063, 1392 |
| Tsp45I | GTSAC | 3 cut(s) | 322, 382, 1345 |
| TspRI | CASTG | 5 cut(s) | 496, 783, 935, 1092, 1185 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1491 |
| VpaK11BI | GGWCC | 1 cut(s) | 694 |
| VspI | ATTAAT | 1 cut(s) | 339 |
| XceI | RCATGY | 5 cut(s) | 33, 390, 1456, 1537, 1593 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1185 |
| XhoI | CTCGAG | 1 cut(s) | 153 |
| XmaJI | CCTAGG | 1 cut(s) | 532 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1004, 1295 |
| XspI | CTAG | 2 cut(s) | 533, 1343 |
| Zsp2I | ATGCAT | 1 cut(s) | 1591 |