Rmu_sc0005227.1_g000011
ERF Family

Transmembrane 9 superfamily member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005227.1
OG0003988
Physical Location & Seq
Reverse (-)
40339 .. 41388
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005227.1_g000011.1.cds

Sequence Viewer

Length: 1050 bp
atggttgtggtgcgaactctttacagggatatcaacagctacaatcagttggagacccaagatgaggctcaggaactaacaggatggaaactagtccatgcagatgttttcaggccaccccccaacgctaatttattgtgtgtttgtgttgggaatggtgtccaattctttgggacgatgctcatcacgatcatatttggtctgcttggtttcctttcaccttcgaacagaggtgggttgatcacagcaatggttctttcgtggatgttcatgggcttatttgggggatactactcggcacacttgtacaagatgttcaaaggcacggaatggaagaagattgcattaaagacagcctttatgtttcctgttacattgattggaattttcttcatattgaatgccttgatttgggaggagaaatcctgtggttcagtgccactggggacaatgtttaccctggtactcttgtggtctggaatatcggcgccattggttttcttaggcagctactttggcttcaaaatgtcaccaattgatgatcctatcaaaactaatgaaattccaagacagattcctgagcgaccatggcacaacataaagcggctcttgtctatgctatttggaagcattctaccatttaatgtagtgctcactgagttcctctctatctggacgtctatatggccagaccaatactctttcgggttcctcttcatggcctttgttatacttctagtcacttgttccgagatggctattctactgtgctacttccaacttcgcagcgaagattacaattggtggtggagagcatacctgactattggctcttctggtctgtacatgttttcatactccatattctatttcttcaccaacatggagattgaaaagtttgtttctgtcatcctttatttcgggtacatgttaatgggatcctttgtttacaatcacctgagattcaacgtcatgtaccatgaggatccggagaccaaattttctcgcattgttggttttgagattacaccatacaggttcagaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EMP70

Protein Analysis

349

Amino Acids

40.56

Weight (kDa)

7.62

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 680
AccB1I GGYRCC 1 cut(s) 487
AccIII TCCGGA 1 cut(s) 988
AciI CCGC 1 cut(s) 604
AclWI GGATC 5 cut(s) 536, 933, 946, 980, 993
AcoI YGGCCR 1 cut(s) 686
AcsI RAATTY 3 cut(s) 384, 561, 998
AcyI GRCGYC 2 cut(s) 488, 677
AfaI GTAC 5 cut(s) 308, 465, 845, 926, 977
AfiI CCNNNNNNNGG 3 cut(s) 64, 411, 718
AflIII ACRYGT 2 cut(s) 846, 927
AgsI TTSAA 5 cut(s) 319, 400, 523, 893, 967
AhlI ACTAGT 1 cut(s) 91
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 2 cut(s) 39, 510
AluI AGCT 2 cut(s) 39, 510
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 2 cut(s) 47, 986
AlwI GGATC 5 cut(s) 536, 933, 946, 980, 993
Aor13HI TCCGGA 1 cut(s) 988
AoxI GGCC 3 cut(s) 113, 686, 720
ApeKI GCWGC 2 cut(s) 507, 786
ApoI RAATTY 3 cut(s) 384, 561, 998
AspLEI GCGC 1 cut(s) 490
AsuHPI GGTGA 4 cut(s) 210, 522, 868, 947
AsuII TTCGAA 1 cut(s) 224
BaeI ACNNNNGTAYC 2 cut(s) 455, 488
BalI TGGCCA 1 cut(s) 688
BamHI GGATCC 2 cut(s) 938, 985
BanI GGYRCC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 519, 798
BccI CCATC 2 cut(s) 78, 748
BciT130I CCWGG 1 cut(s) 461
BciVI GTATCC 1 cut(s) 281
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 47, 986
BcuI ACTAGT 1 cut(s) 91
BfaI CTAG 3 cut(s) 92, 737, 1048
BfoI RGCGCY 1 cut(s) 491
BfuI GTATCC 1 cut(s) 281
BisI GCNGC 3 cut(s) 508, 605, 787
BlsI GCNGC 3 cut(s) 509, 606, 788
Bme1390I CCNGG 1 cut(s) 461
BmiI GGNNCC 4 cut(s) 489, 710, 940, 987
BmrFI CCNGG 1 cut(s) 461
BmrI ACTGGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 452
BplI GAGNNNNNCTC 2 cut(s) 650, 682
Bpu10I CCTNAGC 2 cut(s) 69, 579
Bpu14I TTCGAA 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 182
BsaHI GRCGYC 2 cut(s) 488, 677
BsaI GGTCTC 2 cut(s) 47, 986
BsaJI CCNNGG 2 cut(s) 459, 587
BsaWI WCCGGW 1 cut(s) 988
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 411, 718
Bse1I ACTGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 182
BseAI TCCGGA 1 cut(s) 988
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 2 cut(s) 459, 587
BseGI GGATG 3 cut(s) 89, 270, 909
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 64, 411, 718
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 4 cut(s) 83, 570, 648, 950
BseNI ACTGG 1 cut(s) 447
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 2 cut(s) 519, 798
BshFI GGCC 3 cut(s) 115, 688, 722
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 654
BsiSI CCGG 1 cut(s) 989
BslFI GGGAC 2 cut(s) 187, 460
BslI CCNNNNNNNGG 3 cut(s) 64, 411, 718
BsmAI GTCTC 2 cut(s) 47, 986
BsmFI GGGAC 2 cut(s) 187, 460
BsmI GAATGC 2 cut(s) 406, 630
BsnI GGCC 3 cut(s) 115, 688, 722
Bso31I GGTCTC 2 cut(s) 47, 986
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 654
Bsp13I TCCGGA 1 cut(s) 988
Bsp1407I TGTACA 2 cut(s) 306, 843
Bsp143I GATC 5 cut(s) 189, 240, 541, 938, 985
Bsp19I CCATGG 1 cut(s) 587
BspACI CCGC 1 cut(s) 604
BspANI GGCC 3 cut(s) 115, 688, 722
BspCNI CTCAG 4 cut(s) 82, 571, 649, 951
BspEI TCCGGA 1 cut(s) 988
BspLI GGNNCC 4 cut(s) 489, 710, 940, 987
BspPI GGATC 5 cut(s) 536, 933, 946, 980, 993
BspQI GCTCTTC 1 cut(s) 838
BspT104I TTCGAA 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 487
BspTNI GGTCTC 2 cut(s) 47, 986
BsrDI GCAATG 1 cut(s) 255
BsrGI TGTACA 2 cut(s) 306, 843
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 2 cut(s) 459, 587
BssMI GATC 5 cut(s) 189, 240, 541, 938, 985
BssNI GRCGYC 2 cut(s) 488, 677
BssT1I CCWWGG 1 cut(s) 587
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 1 cut(s) 768
Bst6I CTCTTC 2 cut(s) 719, 838
BstACI GRCGYC 2 cut(s) 488, 677
BstAUI TGTACA 2 cut(s) 306, 843
BstBI TTCGAA 1 cut(s) 224
BstDEI CTNAG 5 cut(s) 69, 502, 579, 657, 959
BstDSI CCRYGG 1 cut(s) 587
BstF5I GGATG 3 cut(s) 89, 270, 909
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 5 cut(s) 192, 243, 544, 941, 988
BstMAI GTCTC 2 cut(s) 47, 986
BstMBI GATC 5 cut(s) 189, 240, 541, 938, 985
BstMWI GCNNNNNNNGC 2 cut(s) 516, 589
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 2 cut(s) 850, 931
BstSCI CCNGG 1 cut(s) 459
BstV1I GCAGC 2 cut(s) 519, 798
BstX2I RGATCY 2 cut(s) 938, 985
BstXI CCANNNNNNTGG 1 cut(s) 170
BstYI RGATCY 2 cut(s) 938, 985
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 3 cut(s) 115, 688, 722
BtgI CCRYGG 1 cut(s) 587
BtsCI GGATG 3 cut(s) 89, 270, 909
BtsIMutI CAGTG 3 cut(s) 440, 441, 654
CfoI GCGC 1 cut(s) 490
Csp6I GTAC 5 cut(s) 307, 464, 844, 925, 976
CviAII CATG 9 cut(s) 98, 271, 588, 718, 847, 883, 928, 973, 980
CviQI GTAC 5 cut(s) 307, 464, 844, 925, 976
DdeI CTNAG 5 cut(s) 69, 502, 579, 657, 959
DinI GGCGCC 1 cut(s) 489
DpnI GATC 5 cut(s) 191, 242, 543, 940, 987
DpnII GATC 5 cut(s) 189, 240, 541, 938, 985
EaeI YGGCCR 1 cut(s) 686
Eam1104I CTCTTC 2 cut(s) 719, 838
EarI CTCTTC 2 cut(s) 719, 838
Eco130I CCWWGG 1 cut(s) 587
Eco31I GGTCTC 2 cut(s) 47, 986
Eco32I GATATC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 459
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 587
EgeI GGCGCC 1 cut(s) 489
EheI GGCGCC 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 9 cut(s) 101, 274, 591, 721, 850, 886, 931, 976, 983
FalI AAGNNNNNCTT 4 cut(s) 341, 373, 593, 625
FaqI GGGAC 2 cut(s) 187, 460
FatI CATG 9 cut(s) 97, 270, 587, 717, 846, 882, 927, 972, 979
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 508, 605, 787
FokI GGATG 3 cut(s) 96, 277, 896
Fsp4HI GCNGC 3 cut(s) 508, 605, 787
FspBI CTAG 3 cut(s) 92, 737, 1048
GlaI GCGC 1 cut(s) 489
GluI GCNGC 3 cut(s) 508, 605, 787
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 3 cut(s) 115, 688, 722
HapII CCGG 1 cut(s) 989
HhaI GCGC 1 cut(s) 490
Hin1I GRCGYC 2 cut(s) 488, 677
Hin1II CATG 9 cut(s) 101, 274, 591, 721, 850, 886, 931, 976, 983
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HinfI GANTC 3 cut(s) 574, 963, 1044
HpaII CCGG 1 cut(s) 989
HphI GGTGA 4 cut(s) 210, 522, 868, 947
Hpy166II GTNNAC 2 cut(s) 456, 949
Hpy188I TCNGA 2 cut(s) 751, 1043
Hpy188III TCNNGA 6 cut(s) 71, 187, 477, 578, 673, 989
Hpy8I GTNNAC 2 cut(s) 456, 949
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 768
HpyCH4IV ACGT 2 cut(s) 677, 969
HpyCH4V TGCA 2 cut(s) 101, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 516, 589
HpyF3I CTNAG 5 cut(s) 69, 502, 579, 657, 959
HpySE526I ACGT 2 cut(s) 677, 969
Hsp92I GRCGYC 2 cut(s) 488, 677
Hsp92II CATG 9 cut(s) 101, 274, 591, 721, 850, 886, 931, 976, 983
HspAI GCGC 1 cut(s) 488
KasI GGCGCC 1 cut(s) 487
Kpn2I TCCGGA 1 cut(s) 988
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 5 cut(s) 189, 240, 541, 938, 985
LguI GCTCTTC 1 cut(s) 838
Lsp1109I GCAGC 2 cut(s) 519, 798
LweI GCATC 1 cut(s) 168
MaeI CTAG 3 cut(s) 92, 737, 1048
MaeII ACGT 2 cut(s) 677, 969
MaeIII GTNAC 3 cut(s) 370, 528, 739
MalI GATC 5 cut(s) 191, 242, 543, 940, 987
MboI GATC 5 cut(s) 189, 240, 541, 938, 985
MboII GAAGA 7 cut(s) 346, 349, 382, 706, 803, 825, 865
MfeI CAATTG 2 cut(s) 534, 799
MflI RGATCY 2 cut(s) 938, 985
MhlI GDGCHC 1 cut(s) 654
MlsI TGGCCA 1 cut(s) 688
MluCI AATT 7 cut(s) 130, 164, 384, 534, 561, 799, 998
MluNI TGGCCA 1 cut(s) 688
Mly113I GGCGCC 1 cut(s) 488
MmeI TCCRAC 2 cut(s) 30, 802
MnlI CCTC 6 cut(s) 58, 224, 409, 674, 722, 976
Mox20I TGGCCA 1 cut(s) 688
MroI TCCGGA 1 cut(s) 988
MscI TGGCCA 1 cut(s) 688
MseI TTAA 3 cut(s) 347, 642, 932
MslI CAYNNNNRTG 4 cut(s) 102, 248, 881, 932
Msp20I TGGCCA 1 cut(s) 688
MspI CCGG 1 cut(s) 989
MspR9I CCNGG 1 cut(s) 461
MunI CAATTG 2 cut(s) 534, 799
Mva1269I GAATGC 2 cut(s) 406, 630
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 516, 589
NarI GGCGCC 1 cut(s) 488
NcoI CCATGG 1 cut(s) 587
NdeII GATC 5 cut(s) 189, 240, 541, 938, 985
NlaIII CATG 9 cut(s) 101, 274, 591, 721, 850, 886, 931, 976, 983
NlaIV GGNNCC 4 cut(s) 489, 710, 940, 987
NmeAIII GCCGAG 1 cut(s) 275
NmuCI GTSAC 2 cut(s) 528, 739
NspI RCATGY 2 cut(s) 850, 931
NspV TTCGAA 1 cut(s) 224
PciI ACATGT 2 cut(s) 846, 927
PciSI GCTCTTC 1 cut(s) 838
PctI GAATGC 2 cut(s) 406, 630
PfeI GAWTC 3 cut(s) 574, 963, 1044
PkrI GCNGC 3 cut(s) 509, 606, 788
PluTI GGCGCC 1 cut(s) 491
PscI ACATGT 2 cut(s) 846, 927
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 4 cut(s) 489, 710, 940, 987
PsrI GAACNNNNNNTAC 2 cut(s) 299, 331
PsuI RGATCY 2 cut(s) 938, 985
RsaI GTAC 5 cut(s) 308, 465, 845, 926, 977
RsaNI GTAC 5 cut(s) 307, 464, 844, 925, 976
RseI CAYNNNNRTG 4 cut(s) 102, 248, 881, 932
SapI GCTCTTC 1 cut(s) 838
SaqAI TTAA 3 cut(s) 347, 642, 932
SatI GCNGC 3 cut(s) 508, 605, 787
Sau3AI GATC 5 cut(s) 189, 240, 541, 938, 985
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 1 cut(s) 654
SetI ASST 9 cut(s) 41, 223, 235, 512, 680, 822, 960, 972, 1040
SfaNI GCATC 1 cut(s) 168
SfoI GGCGCC 1 cut(s) 489
SfuI TTCGAA 1 cut(s) 224
SmiMI CAYNNNNRTG 4 cut(s) 102, 248, 881, 932
SpeI ACTAGT 1 cut(s) 91
Sse9I AATT 7 cut(s) 130, 164, 384, 534, 561, 799, 998
SsiI CCGC 1 cut(s) 604
SspDI GGCGCC 1 cut(s) 487
SspMI CTAG 3 cut(s) 92, 737, 1048
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 1 cut(s) 768
TaiI ACGT 2 cut(s) 680, 972
TaqI TCGA 1 cut(s) 224
TasI AATT 7 cut(s) 130, 164, 384, 534, 561, 799, 998
TatI WGTACW 2 cut(s) 306, 843
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 3 cut(s) 574, 963, 1044
Tru1I TTAA 3 cut(s) 347, 642, 932
Tru9I TTAA 3 cut(s) 347, 642, 932
TscAI CASTG 3 cut(s) 441, 447, 661
TseFI GTSAC 2 cut(s) 528, 739
TseI GCWGC 2 cut(s) 507, 786
Tsp45I GTSAC 2 cut(s) 528, 739
TspDTI ATGAA 5 cut(s) 259, 382, 573, 706, 843
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 3 cut(s) 441, 447, 661
XapI RAATTY 3 cut(s) 384, 561, 998
XceI RCATGY 2 cut(s) 850, 931
XspI CTAG 3 cut(s) 92, 737, 1048
ZraI GACGTC 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.