Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8263599.1

Orthogroup ID

OG0007353

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 813

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8263599.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

gcgctgggcaagaggtaggcaagagctgtgtgattgtgacgataaacgggaaacgcatcatgttcgactgtggtatgcatatgggccacctcgaccaccgccgctacccggacttctctctcatcggcccaaacttcaatcaaaccctcacttgcatcatcattactcactttcatctggatcacattggcgcgctcccttacttcactgaagtctgcggttacagtggccccatttacatgacttatccgacgaaggcgctggcgcctttgatgttggaggattataggaaagtgatggttgagagaaggggagaggaggaacagtttacgtcggagcacattgtcgaatgcatgaagaaagttataccggtggacctgaagcagacggtgcaggttgataaggatcttcaaatccgtgcttactatgcaggacatgtaaggctttcgtgttgtcatcttgctcaactgttgagtcctgaactcctgatcatagttttcttttttatgcttctcaggttct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

173

Amino Acids

19.93

Weight (kDa)

6.82

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01730 AT2G01730
fragaria_vesca	FvH4_4g33520
malus_domestica	MD16G1018300.v1.1
prunus_persica	Prupe.1G333600_v2.0.a1
pyrus_communis	pycom16g01670
rosa_chinensis	RchiOBHm_Chr3g0480131 RchiOBHm_Chr4g0443031
rosa_laevigata	RLG00000005961
rosa_multiflora	Rmu_co8263599.1_g000001 Rmu_sc0006604.1_g000001 Rmu_sc0006604.1_g000004 Rmu_sc0008055.1_g000002 Rmu_sc0011261.1_g000006
rosa_roxburghii	Rroxscaffold_5G00383660
rosa_rugosa	Rorug04G0343900
rosa_samantha	Rh3AG232100 Rh3CG261900 Rh3DG257700 Rh4AG398100 Rh4BG409600 Rh4CG425100 Rh4DG404400
rosa_wichuraiana	Rw3G020840 Rw4G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	264
AccII	CGCG	1 cut(s)	193
AciI	CCGC	3 cut(s)	99, 102, 218
AclWI	GGATC	2 cut(s)	188, 413
AcuI	CTGAAG	2 cut(s)	230, 400
AcyI	GRCGYC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	435
AgeI	ACCGGT	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	138, 412
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	341
AlwI	GGATC	2 cut(s)	188, 413
AoxI	GGCC	3 cut(s)	84, 126, 228
AsiGI	ACCGGT	1 cut(s)	369
AspLEI	GCGC	5 cut(s)	4, 193, 195, 261, 267
AspS9I	GGNCC	4 cut(s)	84, 127, 229, 375
AsuC2I	CCSGG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	341
BccI	CCATC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BclI	TGATCA	1 cut(s)	488
BcnI	CCSGG	1 cut(s)	109
BfoI	RGCGCY	2 cut(s)	262, 268
BfuAI	ACCTGC	1 cut(s)	384
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	4 cut(s)	84, 127, 229, 375
BmiI	GGNNCC	2 cut(s)	231, 266
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	2 cut(s)	65, 164
BpuMI	CCSGG	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	404
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	108
BsePI	GCGCGC	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	193
BshFI	GGCC	3 cut(s)	86, 128, 230
BshNI	GGYRCC	1 cut(s)	264
BshTI	ACCGGT	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	109, 370
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	86, 128, 230
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	180, 405, 488
BspACI	CCGC	3 cut(s)	99, 102, 218
BspANI	GGCC	3 cut(s)	86, 128, 230
BspFNI	CGCG	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	231, 266
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	188, 413
BspT107I	GGYRCC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	369
BssHII	GCGCGC	1 cut(s)	191
BssMI	GATC	3 cut(s)	180, 405, 488
BssNI	GRCGYC	1 cut(s)	265
Bst4CI	ACNGT	5 cut(s)	70, 226, 326, 390, 470
BstACI	GRCGYC	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	193, 263
BstDEI	CTNAG	1 cut(s)	514
BstFNI	CGCG	1 cut(s)	193
BstH2I	RGCGCY	2 cut(s)	262, 268
BstHHI	GCGC	5 cut(s)	4, 193, 195, 261, 267
BstKTI	GATC	3 cut(s)	183, 408, 491
BstMBI	GATC	3 cut(s)	180, 405, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 427
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	86, 128, 230
BtsIMutI	CAGTG	2 cut(s)	206, 231
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	193, 263
CfoI	GCGC	5 cut(s)	4, 193, 195, 261, 267
Cfr10I	RCCGGY	1 cut(s)	369
Cfr13I	GGNCC	4 cut(s)	84, 127, 229, 375
CspAI	ACCGGT	1 cut(s)	369
CviAII	CATG	4 cut(s)	60, 240, 354, 436
CviJI	RGCY	5 cut(s)	26, 86, 128, 230, 444
CviKI_1	RGCY	5 cut(s)	26, 86, 128, 230, 444
DdeI	CTNAG	1 cut(s)	514
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	3 cut(s)	182, 407, 490
DpnII	GATC	3 cut(s)	180, 405, 488
Eco47I	GGWCC	1 cut(s)	375
Eco57I	CTGAAG	2 cut(s)	230, 400
EcoT22I	ATGCAT	2 cut(s)	80, 355
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
FaeI	CATG	4 cut(s)	63, 243, 357, 439
FatI	CATG	4 cut(s)	59, 239, 353, 435
FauNDI	CATATG	1 cut(s)	80
FbaI	TGATCA	1 cut(s)	488
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
GlaI	GCGC	5 cut(s)	3, 192, 194, 260, 266
GluI	GCNGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	8
HaeII	RGCGCY	2 cut(s)	262, 268
HaeIII	GGCC	3 cut(s)	86, 128, 230
HapII	CCGG	2 cut(s)	109, 370
HhaI	GCGC	5 cut(s)	4, 193, 195, 261, 267
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	4 cut(s)	63, 243, 357, 439
Hin6I	GCGC	5 cut(s)	2, 191, 193, 259, 265
HinP1I	GCGC	5 cut(s)	2, 191, 193, 259, 265
HinfI	GANTC	1 cut(s)	474
HpaII	CCGG	2 cut(s)	109, 370
Hpy166II	GTNNAC	2 cut(s)	329, 375
Hpy188I	TCNGA	2 cut(s)	251, 336
Hpy188III	TCNNGA	3 cut(s)	178, 478, 486
Hpy8I	GTNNAC	2 cut(s)	329, 375
Hpy99I	CGWCG	2 cut(s)	255, 336
HpyAV	CCTTC	2 cut(s)	249, 302
HpyCH4III	ACNGT	5 cut(s)	70, 226, 326, 390, 470
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	78, 155, 353, 393, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 427
HpyF3I	CTNAG	1 cut(s)	514
HpySE526I	ACGT	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	4 cut(s)	63, 243, 357, 439
HspAI	GCGC	5 cut(s)	2, 191, 193, 259, 265
KasI	GGCGCC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	488
Kzo9I	GATC	3 cut(s)	180, 405, 488
LmnI	GCTCC	2 cut(s)	200, 336
LweI	GCATC	2 cut(s)	65, 164
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	36, 220
MalI	GATC	3 cut(s)	182, 407, 490
MboI	GATC	3 cut(s)	180, 405, 488
MboII	GAAGA	2 cut(s)	369, 400
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	3 cut(s)	257, 274, 314
MnlI	CCTC	6 cut(s)	6, 100, 157, 273, 309, 312
Mph1103I	ATGCAT	2 cut(s)	80, 355
MslI	CAYNNNNRTG	1 cut(s)	238
MspI	CCGG	2 cut(s)	109, 370
MspR9I	CCNGG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	355
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	390, 427
NarI	GGCGCC	1 cut(s)	265
NciI	CCSGG	1 cut(s)	109
NdeI	CATATG	1 cut(s)	80
NdeII	GATC	3 cut(s)	180, 405, 488
NlaIII	CATG	4 cut(s)	63, 243, 357, 439
NlaIV	GGNNCC	2 cut(s)	231, 266
NmuCI	GTSAC	1 cut(s)	36
NsiI	ATGCAT	2 cut(s)	80, 355
NspI	RCATGY	1 cut(s)	439
PauI	GCGCGC	1 cut(s)	191
PciI	ACATGT	1 cut(s)	435
PctI	GAATGC	1 cut(s)	355
PinAI	ACCGGT	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	482
PluTI	GGCGCC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	482
PscI	ACATGT	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	231, 266
PspPI	GGNCC	4 cut(s)	84, 127, 229, 375
PsuI	RGATCY	1 cut(s)	405
PteI	GCGCGC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	238
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	3 cut(s)	180, 405, 488
Sau96I	GGNCC	4 cut(s)	84, 127, 229, 375
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	7 cut(s)	17, 28, 92, 334, 380, 398, 520
SfaNI	GCATC	2 cut(s)	65, 164
SfoI	GGCGCC	1 cut(s)	266
SinI	GGWCC	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	238
SsiI	CCGC	3 cut(s)	99, 102, 218
SspDI	GGCGCC	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	5 cut(s)	70, 226, 326, 390, 470
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	3 cut(s)	65, 92, 347
TauI	GCSGC	1 cut(s)	104
TscAI	CASTG	2 cut(s)	213, 231
TseFI	GTSAC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	163, 370
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	2 cut(s)	213, 231
VpaK11BI	GGWCC	1 cut(s)	375
XceI	RCATGY	1 cut(s)	439
Zsp2I	ATGCAT	2 cut(s)	80, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.