Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007353

Physical Location & Seq

Genomic Coordinates Forward (+)

66829953 .. 66835481

Gene Structure 5529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG425100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1725 bp

ATGTTGGAGGACTATCGGAAAGTGATGGTTGAGAGAAGGGGCGAGGAGGAACAGTTTACGTCCGAGCATATTGTTGAATGCATGAAGAAAGTTATACCGGTGGATCTCAAGCAGACGTTGCAGGTTGATAAGGATCTTCAAATCCGTGCTTACTATGCCGGACATGTAAGGCTTTCGTGTTGTCAATTTGCTCGACTGTTGAGTCCTGAACTCCTGATCAAAATTTCTTATGCTTTCAAGGTTCTTGGAGCTGCAATGTTTTATGCAAAGGTGGGAGACGCTGCTATGGTGTACACAGGAGACTATAATATGACACCAGACAGGCATCTTGGAGCAGCTCAAATTGATCGACTAAGTTTGGACCTTGTTATTACAGAGTATGGGATGTCCACATATGCAACAACCATTCGTGATTCAAAATATGCCCGGGAAAGAGAATTTCTCAGAGCTGTTCACACTTGTGTTGCTGGTGGGGGAAAAGTGCTAATTCCTTCATTTGCTCTGGGAAGAGCTCAGGAACTCTGTATCTTATTGGAAGACTACTGGGAGCGCATGAATTTAAAGGTTCCTATTTACTTCTCAGCAGGTTTGACCCGTCAAGCCAATATGTATTATAAGATGCTCATCAGTTGGACCAGCCAGAAAATCAAAGAAACATACTCCACACATAATGCATTTGATTTTAAAAATGTTCACAAATTTGAGCGGTCTATGATAGATGCTCCTGGACCTTGTGTTCTGTTTGCCACACCAGGGATGATCAGTGGTGGTTTTTCACTTGAGGTTTTTAAGCACTGGGCTCCTTCAGAAAAGAATCTTGTTACAATGCCAGGGTATTGCGTGGCTGGAACCATAGGACATAAATTAATGTCTGGTAAACCGACCAAAATTGATCTGGACAAGGACACCCGAATTGATGTGCGATGCCAGATTCATCAATTGACTTTCAGTCCTCATACAGATGCCAAAGGGATTATGGATCTGGTGAAGTTTCTTTCTCCCAAGCACGTGATACTTGTTCATGGTGAGAAGCCTAGGATGGCTACTCTGAAAGGAAGAATTCAATCCGAACTGGGAATTCAATGCTACGACCCTGCAAACAATGAGACCGTGTCAGTTCCGTCCACCCACTATGCGACAGCAGTAGCTTCCGATGCATTTGTCCAAAGTTGCTCAAATCCAAACTTCAAGTTTTCTACAGGCGGCTCAGAACACGAACAAGGTTCGAGTTCGAGCAACAGAAAATCCATTCCAAGACTGCAAGTGAGTGATGATAGGGTAGCCGAAGGGATCTTGGTTATGGAGAAAAACAAAAAAGCCAAGGTAGTGCACCAAGATGAGCTCCTGGTCATGTTAGAAGAAAAGAAGCACCAAGTCAAGTTTGCATATTGCTGTCCTGCTCACATTGGTAACTTGCAAGAGAATCAAGAGACCGAAGGCACCGGCCTGCCTCTGTCTTCAACAAACAATGATCTGCTTCAGCTATTGTCTGCAAAACTCGCAAATGAACTCTCCGGGGGGAGCATTCAAGATTTCGGGGATCACCTTCAAGTGGAGTCGTTTCGCGTGTCCATTTGTTCAAAGGAGGATTGCCCTTACAGGTTAAGTGACAACGGTGGTGAAGGACACTATGAATTACCAGTGTTCTTTTGCTGCAGTTGGGCAATGGAAGATGAGAAGCTTGCATGGAAAGTCATCTCAGCGTGTCAAGAGTCAACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

574

Amino Acids

64.35

Weight (kDa)

6.56

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-Casp	PF10996	171 - 289	2.4e-28	Beta-Casp domain
RMMBL	PF07521	304 - 363	8.4e-16	Zn-dependent metallo-hydrolase RNA specificity domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01730 AT2G01730
fragaria_vesca	FvH4_4g33520
malus_domestica	MD16G1018300.v1.1
prunus_persica	Prupe.1G333600_v2.0.a1
pyrus_communis	pycom16g01670
rosa_chinensis	RchiOBHm_Chr3g0480131 RchiOBHm_Chr4g0443031
rosa_laevigata	RLG00000005961
rosa_multiflora	Rmu_co8263599.1_g000001 Rmu_sc0006604.1_g000001 Rmu_sc0006604.1_g000004 Rmu_sc0008055.1_g000002 Rmu_sc0011261.1_g000006
rosa_roxburghii	Rroxscaffold_5G00383660
rosa_rugosa	Rorug04G0343900
rosa_samantha	Rh3AG232100 Rh3CG261900 Rh3DG257700 Rh4AG398100 Rh4BG409600 Rh4CG425100 Rh4DG404400
rosa_wichuraiana	Rw3G020840 Rw4G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AasI	GACNNNNNNGTC	1 cut(s)	201
Acc36I	ACCTGC	2 cut(s)	112, 575
AccB1I	GGYRCC	1 cut(s)	1439
AccBSI	CCGCTC	1 cut(s)	706
AccII	CGCG	1 cut(s)	1566
AciI	CCGC	2 cut(s)	706, 1203
AclWI	GGATC	5 cut(s)	111, 141, 987, 1298, 1548
AcsI	RAATTY	6 cut(s)	222, 437, 556, 698, 1059, 1077
AcuI	CTGAAG	2 cut(s)	789, 1463
AcvI	CACGTG	1 cut(s)	1009
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	753, 1552
AflIII	ACRYGT	1 cut(s)	163
AgeI	ACCGGT	1 cut(s)	97
AhdI	GACNNNNNGTC	1 cut(s)	948
AjnI	CCWGG	4 cut(s)	724, 751, 829, 1344
AleI	CACNNNNGTG	1 cut(s)	459
AloI	GAACNNNNNNTCC	2 cut(s)	720, 752
AluBI	AGCT	8 cut(s)	251, 338, 449, 512, 1148, 1342, 1483, 1681
AluI	AGCT	8 cut(s)	251, 338, 449, 512, 1148, 1342, 1483, 1681
Alw21I	GWGCWC	3 cut(s)	514, 1332, 1344
Alw26I	GTCTC	4 cut(s)	270, 294, 1100, 1424
Alw44I	GTGCAC	1 cut(s)	1328
AlwI	GGATC	5 cut(s)	111, 141, 987, 1298, 1548
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	1 cut(s)	1444
ApaLI	GTGCAC	1 cut(s)	1328
ApeKI	GCWGC	4 cut(s)	251, 281, 335, 1653
ApoI	RAATTY	6 cut(s)	222, 437, 556, 698, 1059, 1077
AseI	ATTAAT	1 cut(s)	866
AsiGI	ACCGGT	1 cut(s)	97
AspA2I	CCTAGG	1 cut(s)	1034
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	3 cut(s)	361, 633, 728
AsuC2I	CCSGG	3 cut(s)	427, 428, 1516
AsuHPI	GGTGA	4 cut(s)	997, 1037, 1535, 1631
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	3 cut(s)	361, 633, 728
AvrII	CCTAGG	1 cut(s)	1034
BaeGI	GKGCMC	1 cut(s)	1332
BanI	GGYRCC	1 cut(s)	1439
BanII	GRGCYC	3 cut(s)	514, 802, 1344
BbrPI	CACGTG	1 cut(s)	1009
BbsI	GAAGAC	2 cut(s)	543, 1449
Bbv12I	GWGCWC	3 cut(s)	514, 1332, 1344
BbvI	GCAGC	4 cut(s)	238, 268, 347, 1640
BccI	CCATC	2 cut(s)	19, 1033
BciT130I	CCWGG	4 cut(s)	726, 753, 831, 1346
BclI	TGATCA	2 cut(s)	216, 759
BcnI	CCSGG	3 cut(s)	427, 428, 1516
BcoDI	GTCTC	4 cut(s)	270, 294, 1100, 1424
BfaI	CTAG	1 cut(s)	1035
BfmI	CTRYAG	2 cut(s)	1197, 1654
BfuAI	ACCTGC	2 cut(s)	112, 575
BisI	GCNGC	5 cut(s)	252, 282, 336, 1204, 1654
BlnI	CCTAGG	1 cut(s)	1034
BlsI	GCNGC	5 cut(s)	253, 283, 337, 1205, 1655
Bme1390I	CCNGG	7 cut(s)	427, 428, 726, 753, 831, 1346, 1516
Bme18I	GGWCC	3 cut(s)	361, 633, 728
BmeRI	GACNNNNNGTC	1 cut(s)	948
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	3 cut(s)	361, 633, 728
BmiI	GGNNCC	4 cut(s)	567, 801, 850, 1441
BmrFI	CCNGG	7 cut(s)	427, 428, 726, 753, 831, 1346, 1516
BmrI	ACTGGG	3 cut(s)	553, 805, 1082
BmsI	GCATC	6 cut(s)	334, 609, 709, 914, 952, 1144
BmuI	ACTGGG	3 cut(s)	553, 805, 1082
BpiI	GAAGAC	2 cut(s)	543, 1449
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	2 cut(s)	92, 800
BpuMI	CCSGG	3 cut(s)	427, 428, 1516
BsaAI	YACGTR	1 cut(s)	1009
BsaBI	GATNNNNATC	2 cut(s)	132, 623
BsaI	GGTCTC	2 cut(s)	1100, 1424
BsaJI	CCNNGG	6 cut(s)	426, 752, 830, 1034, 1320, 1515
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	753, 1552
Bse118I	RCCGGY	2 cut(s)	97, 1442
Bse1I	ACTGG	4 cut(s)	548, 800, 1077, 1640
Bse3DI	GCAATG	2 cut(s)	261, 1671
Bse8I	GATNNNNATC	2 cut(s)	132, 623
BseBI	CCWGG	4 cut(s)	726, 753, 831, 1346
BseDI	CCNNGG	6 cut(s)	426, 752, 830, 1034, 1320, 1515
BseGI	GGATG	3 cut(s)	390, 762, 1044
BseJI	GATNNNNATC	2 cut(s)	132, 623
BseLI	CCNNNNNNNGG	2 cut(s)	753, 1552
BseMI	GCAATG	2 cut(s)	261, 1671
BseMII	CTCAG	5 cut(s)	457, 527, 594, 1221, 1713
BseNI	ACTGG	4 cut(s)	548, 800, 1077, 1640
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	1332
BseXI	GCAGC	4 cut(s)	238, 268, 347, 1640
Bsh1236I	CGCG	1 cut(s)	1566
BshFI	GGCC	1 cut(s)	1446
BshNI	GGYRCC	1 cut(s)	1439
BshTI	ACCGGT	1 cut(s)	97
BsiHKAI	GWGCWC	3 cut(s)	514, 1332, 1344
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	5 cut(s)	98, 159, 427, 1443, 1515
BslI	CCNNNNNNNGG	2 cut(s)	753, 1552
BsmAI	GTCTC	4 cut(s)	270, 294, 1100, 1424
BsmBI	CGTCTC	1 cut(s)	270
BsmI	GAATGC	2 cut(s)	83, 1524
BsnI	GGCC	1 cut(s)	1446
Bso31I	GGTCTC	2 cut(s)	1100, 1424
BsoBI	CYCGRG	1 cut(s)	426
Bsp1286I	GDGCHC	4 cut(s)	514, 802, 1332, 1344
Bsp1407I	TGTACA	1 cut(s)	291
BspACI	CCGC	2 cut(s)	706, 1203
BspANI	GGCC	1 cut(s)	1446
BspCNI	CTCAG	5 cut(s)	456, 526, 593, 1220, 1712
BspFNI	CGCG	1 cut(s)	1566
BspLI	GGNNCC	4 cut(s)	567, 801, 850, 1441
BspMAI	CTGCAG	1 cut(s)	1658
BspMI	ACCTGC	2 cut(s)	112, 575
BspPI	GGATC	5 cut(s)	111, 141, 987, 1298, 1548
BspQI	GCTCTTC	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	1439
BspTNI	GGTCTC	2 cut(s)	1100, 1424
BsrBI	CCGCTC	1 cut(s)	706
BsrDI	GCAATG	2 cut(s)	261, 1671
BsrFI	RCCGGY	2 cut(s)	97, 1442
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	4 cut(s)	548, 800, 1077, 1640
BssAI	RCCGGY	2 cut(s)	97, 1442
BssECI	CCNNGG	6 cut(s)	426, 752, 830, 1034, 1320, 1515
BssT1I	CCWWGG	2 cut(s)	1034, 1320
Bst2UI	CCWGG	4 cut(s)	726, 753, 831, 1346
Bst4CI	ACNGT	4 cut(s)	54, 198, 1111, 1616
Bst6I	CTCTTC	1 cut(s)	502
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	1009
BstC8I	GCNNGC	2 cut(s)	1448, 1683
BstDEI	CTNAG	6 cut(s)	353, 443, 513, 580, 1207, 1699
BstF5I	GGATG	3 cut(s)	390, 762, 1044
BstFNI	CGCG	1 cut(s)	1566
BstHHI	GCGC	1 cut(s)	552
BstMAI	GTCTC	4 cut(s)	270, 294, 1100, 1424
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 155, 1154, 1499
BstNI	CCWGG	4 cut(s)	726, 753, 831, 1346
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	7 cut(s)	425, 426, 724, 751, 829, 1344, 1514
BstSFI	CTRYAG	2 cut(s)	1197, 1654
BstSLI	GKGCMC	1 cut(s)	1332
BstUI	CGCG	1 cut(s)	1566
BstV1I	GCAGC	4 cut(s)	238, 268, 347, 1640
BstV2I	GAAGAC	2 cut(s)	543, 1449
BstX2I	RGATCY	4 cut(s)	103, 133, 979, 1290
BstYI	RGATCY	4 cut(s)	103, 133, 979, 1290
BsuRI	GGCC	1 cut(s)	1446
BtgZI	GCGATG	1 cut(s)	937
BtsCI	GGATG	3 cut(s)	390, 762, 1044
BtsIMutI	CAGTG	3 cut(s)	769, 793, 1647
BveI	ACCTGC	2 cut(s)	112, 575
Cac8I	GCNNGC	2 cut(s)	1448, 1683
CfoI	GCGC	1 cut(s)	552
Cfr10I	RCCGGY	2 cut(s)	97, 1442
Cfr13I	GGNCC	3 cut(s)	361, 633, 728
Cfr9I	CCCGGG	1 cut(s)	426
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	292
CspAI	ACCGGT	1 cut(s)	97
CviAII	CATG	6 cut(s)	82, 164, 553, 1022, 1351, 1686
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	6 cut(s)	353, 443, 513, 580, 1207, 1699
DraI	TTTAAA	2 cut(s)	561, 685
DrdI	GACNNNNNNGTC	1 cut(s)	201
DriI	GACNNNNNGTC	1 cut(s)	948
DseDI	GACNNNNNNGTC	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	502
Eam1105I	GACNNNNNGTC	1 cut(s)	948
EarI	CTCTTC	1 cut(s)	502
Ecl136II	GAGCTC	2 cut(s)	512, 1342
Eco130I	CCWWGG	2 cut(s)	1034, 1320
Eco24I	GRGCYC	3 cut(s)	514, 802, 1344
Eco31I	GGTCTC	2 cut(s)	1100, 1424
Eco47I	GGWCC	3 cut(s)	361, 633, 728
Eco53kI	GAGCTC	2 cut(s)	512, 1342
Eco57I	CTGAAG	2 cut(s)	789, 1463
Eco72I	CACGTG	1 cut(s)	1009
Eco88I	CYCGRG	1 cut(s)	426
EcoICRI	GAGCTC	2 cut(s)	512, 1342
EcoRI	GAATTC	2 cut(s)	1059, 1077
EcoRII	CCWGG	4 cut(s)	724, 751, 829, 1344
EcoT14I	CCWWGG	2 cut(s)	1034, 1320
EcoT22I	ATGCAT	3 cut(s)	83, 676, 1159
EcoT38I	GRGCYC	3 cut(s)	514, 802, 1344
ErhI	CCWWGG	2 cut(s)	1034, 1320
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	6 cut(s)	85, 167, 556, 1025, 1354, 1689
FatI	CATG	6 cut(s)	81, 163, 552, 1021, 1350, 1685
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	2 cut(s)	216, 759
Fnu4HI	GCNGC	5 cut(s)	252, 282, 336, 1204, 1654
FokI	GGATG	3 cut(s)	397, 769, 1051
FriOI	GRGCYC	3 cut(s)	514, 802, 1344
Fsp4HI	GCNGC	5 cut(s)	252, 282, 336, 1204, 1654
FspBI	CTAG	1 cut(s)	1035
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	5 cut(s)	252, 282, 336, 1204, 1654
HaeIII	GGCC	1 cut(s)	1446
HapII	CCGG	5 cut(s)	98, 159, 427, 1443, 1515
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	6 cut(s)	85, 167, 556, 1025, 1354, 1689
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HincII	GTYRAC	1 cut(s)	1716
HindII	GTYRAC	1 cut(s)	1716
HindIII	AAGCTT	1 cut(s)	1679
HinfI	GANTC	7 cut(s)	202, 413, 814, 931, 1423, 1556, 1712
HpaII	CCGG	5 cut(s)	98, 159, 427, 1443, 1515
HphI	GGTGA	4 cut(s)	997, 1037, 1535, 1631
Hpy188I	TCNGA	8 cut(s)	18, 64, 446, 808, 1050, 1069, 1153, 1210
Hpy188III	TCNNGA	8 cut(s)	206, 214, 410, 515, 896, 1427, 1529, 1709
HpyAV	CCTTC	7 cut(s)	30, 501, 813, 1280, 1430, 1556, 1616
HpyCH4III	ACNGT	4 cut(s)	54, 198, 1111, 1616
HpyCH4IV	ACGT	3 cut(s)	59, 116, 1008
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 155, 1154, 1499
HpyF3I	CTNAG	6 cut(s)	353, 443, 513, 580, 1207, 1699
HpySE526I	ACGT	3 cut(s)	59, 116, 1008
Hsp92II	CATG	6 cut(s)	85, 167, 556, 1025, 1354, 1689
HspAI	GCGC	1 cut(s)	550
Ksp22I	TGATCA	2 cut(s)	216, 759
LguI	GCTCTTC	1 cut(s)	502
LmnI	GCTCC	7 cut(s)	248, 332, 547, 727, 805, 1347, 1521
Lsp1109I	GCAGC	4 cut(s)	238, 268, 347, 1640
LweI	GCATC	6 cut(s)	334, 609, 709, 914, 952, 1144
MaeI	CTAG	1 cut(s)	1035
MaeII	ACGT	3 cut(s)	59, 116, 1008
MaeIII	GTNAC	3 cut(s)	820, 1409, 1607
MbiI	CCGCTC	1 cut(s)	706
MboII	GAAGA	8 cut(s)	97, 128, 519, 548, 1068, 1370, 1449, 1682
MfeI	CAATTG	1 cut(s)	938
MflI	RGATCY	4 cut(s)	103, 133, 979, 1290
MhlI	GDGCHC	4 cut(s)	514, 802, 1332, 1344
MlyI	GAGTC	3 cut(s)	211, 1565, 1721
MmeI	TCCRAC	1 cut(s)	611
MnlI	CCTC	6 cut(s)	37, 40, 775, 963, 1461, 1579
Mph1103I	ATGCAT	3 cut(s)	83, 676, 1159
MseI	TTAA	5 cut(s)	560, 684, 789, 866, 1604
MslI	CAYNNNNRTG	3 cut(s)	459, 960, 1335
MspI	CCGG	5 cut(s)	98, 159, 427, 1443, 1515
MspR9I	CCNGG	7 cut(s)	427, 428, 726, 753, 831, 1346, 1516
MunI	CAATTG	1 cut(s)	938
Mva1269I	GAATGC	2 cut(s)	83, 1524
MvaI	CCWGG	4 cut(s)	726, 753, 831, 1346
MvnI	CGCG	1 cut(s)	1566
MwoI	GCNNNNNNNGC	4 cut(s)	118, 155, 1154, 1499
NciI	CCSGG	3 cut(s)	427, 428, 1516
NdeI	CATATG	1 cut(s)	394
NlaIII	CATG	6 cut(s)	85, 167, 556, 1025, 1354, 1689
NlaIV	GGNNCC	4 cut(s)	567, 801, 850, 1441
NmuCI	GTSAC	1 cut(s)	1607
NsiI	ATGCAT	3 cut(s)	83, 676, 1159
NspI	RCATGY	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	459
PciI	ACATGT	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	502
PctI	GAATGC	2 cut(s)	83, 1524
PfeI	GAWTC	4 cut(s)	413, 814, 931, 1423
PflFI	GACNNNGTC	1 cut(s)	1111
PfoI	TCCNGGA	1 cut(s)	724
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	5 cut(s)	253, 283, 337, 1205, 1655
PleI	GAGTC	3 cut(s)	210, 1564, 1720
PmaCI	CACGTG	1 cut(s)	1009
PmlI	CACGTG	1 cut(s)	1009
PpsI	GAGTC	3 cut(s)	210, 1564, 1720
Ppu21I	YACGTR	1 cut(s)	1009
PscI	ACATGT	1 cut(s)	163
PshBI	ATTAAT	1 cut(s)	866
PsiI	TTATAA	1 cut(s)	615
Psp124BI	GAGCTC	2 cut(s)	514, 1344
Psp6I	CCWGG	4 cut(s)	724, 751, 829, 1344
PspCI	CACGTG	1 cut(s)	1009
PspGI	CCWGG	4 cut(s)	724, 751, 829, 1344
PspN4I	GGNNCC	4 cut(s)	567, 801, 850, 1441
PspPI	GGNCC	3 cut(s)	361, 633, 728
PstI	CTGCAG	1 cut(s)	1658
PsuI	RGATCY	4 cut(s)	103, 133, 979, 1290
PsyI	GACNNNGTC	1 cut(s)	1111
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	3 cut(s)	459, 960, 1335
SacI	GAGCTC	2 cut(s)	514, 1344
SapI	GCTCTTC	1 cut(s)	502
SaqAI	TTAA	5 cut(s)	560, 684, 789, 866, 1604
SatI	GCNGC	5 cut(s)	252, 282, 336, 1204, 1654
Sau96I	GGNCC	3 cut(s)	361, 633, 728
SchI	GAGTC	3 cut(s)	211, 1565, 1721
ScrFI	CCNGG	7 cut(s)	427, 428, 726, 753, 831, 1346, 1516
SduI	GDGCHC	4 cut(s)	514, 802, 1332, 1344
SfaNI	GCATC	6 cut(s)	334, 609, 709, 914, 952, 1144
SfcI	CTRYAG	2 cut(s)	1197, 1654
SinI	GGWCC	3 cut(s)	361, 633, 728
SmaI	CCCGGG	1 cut(s)	428
SmiMI	CAYNNNNRTG	3 cut(s)	459, 960, 1335
SmlI	CTYRAG	2 cut(s)	107, 779
SmoI	CTYRAG	2 cut(s)	107, 779
SsiI	CCGC	2 cut(s)	706, 1203
SspMI	CTAG	1 cut(s)	1035
SstI	GAGCTC	2 cut(s)	514, 1344
StyD4I	CCNGG	7 cut(s)	425, 426, 724, 751, 829, 1344, 1514
StyI	CCWWGG	2 cut(s)	1034, 1320
TaaI	ACNGT	4 cut(s)	54, 198, 1111, 1616
TaiI	ACGT	3 cut(s)	62, 119, 1011
TaqI	TCGA	4 cut(s)	193, 349, 1226, 1232
TaqII	GACCGA	1 cut(s)	1448
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	1206
TfiI	GAWTC	4 cut(s)	413, 814, 931, 1423
Tru1I	TTAA	5 cut(s)	560, 684, 789, 866, 1604
Tru9I	TTAA	5 cut(s)	560, 684, 789, 866, 1604
TscAI	CASTG	3 cut(s)	769, 800, 1647
TseFI	GTSAC	1 cut(s)	1607
TseI	GCWGC	4 cut(s)	251, 281, 335, 1653
Tsp45I	GTSAC	1 cut(s)	1607
TspDTI	ATGAA	7 cut(s)	98, 483, 569, 923, 1010, 1521, 1647
TspGWI	ACGGA	2 cut(s)	134, 1110
TspMI	CCCGGG	1 cut(s)	426
TspRI	CASTG	3 cut(s)	769, 800, 1647
Tth111I	GACNNNGTC	1 cut(s)	1111
VneI	GTGCAC	1 cut(s)	1328
VpaK11BI	GGWCC	3 cut(s)	361, 633, 728
VspI	ATTAAT	1 cut(s)	866
XapI	RAATTY	6 cut(s)	222, 437, 556, 698, 1059, 1077
XceI	RCATGY	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	2 cut(s)	892, 973
XmaI	CCCGGG	1 cut(s)	426
XmaJI	CCTAGG	1 cut(s)	1034
XspI	CTAG	1 cut(s)	1035
Zsp2I	ATGCAT	3 cut(s)	83, 676, 1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.