Rmu_sc0006604.1_g000001

Cleavage and polyadenylation specificity factor subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006604.1
Physical Location & Seq
Reverse (-)
2 .. 3699
3698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006604.1_g000001.1.cds

Sequence Viewer

Length: 1107 bp
atggccatcgactctctcgttctgggcgctgggcaagaggtaggcaagagctgtgtgattgtgacgataaacgggaaacgcatcatgttcgactgtggtatgcatatgggccacctcgaccaccgccgctacccggacttctctctcatcggcccaaacttcaatcaaaccctcacttgcatcatcattactcactttcatctggatcacattggcgcgctcccttacttcactgaagtctgcggttacagtggccccatttacatgacttatccgacgaaggcgctggcgcctttgatgttggaggattataggaaagtgatggttgagagaaggggagaggaggaacagtttacgtcggagcacattgtcgaatgcatgaagaaagttataccggtggacctgaagcagacggtgcaggttgataaggatcttcaaatccgtgcttactatgcaggacatgttcttggagctgcaatgttttatgcaaaggtgggagacactgctatggtgtacacaggagactataatatgacaccagataggcatcttggagcagctcaaattgatcgactaagtttggaccttgttattacagagtccacatatgcaacaaccattcgtgattcaaaatatgcccgggaaagagaatttctcagagctgttcacacttgtgttgctggtgggggaaaagtgctaattccttcgtttgctctgggaagagctcaggaactctgtatcttattggaagactactgggagcgcatgaatttaaaagttcctatttacttctcagcaggtttgacgcgtcaagccaatatgtattataagatgctcatcagttggaccagccagaaaatcaaagagacatactccacacataatgcatttgattttaaaaatgttcacaaatttgaacggtctatgatagatgctcctggaccttgtgttctgtttgccacaccagggatgatcagtggtggtttttcacttgaggtttttaagcattgggctccttcagaaaagaatcttgttacaatgccagggtattgcgtggctggaaccataggacataaattaatgtcgggtaaaccgaccaaaattgat

Protein Analysis

369

Amino Acids

41.52

Weight (kDa)

7.62

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
Acc36I ACCTGC 2 cut(s) 409, 788
AccB1I GGYRCC 1 cut(s) 289
AccII CGCG 2 cut(s) 218, 808
AciI CCGC 3 cut(s) 124, 127, 243
AclWI GGATC 2 cut(s) 213, 438
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 650, 769, 911
AcuI CTGAAG 3 cut(s) 255, 425, 1002
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 133, 966
AflIII ACRYGT 2 cut(s) 460, 806
AgeI ACCGGT 1 cut(s) 394
AgsI TTSAA 4 cut(s) 163, 437, 630, 917
AjnI CCWGG 3 cut(s) 937, 964, 1042
AleI CACNNNNGTG 1 cut(s) 672
AloI GAACNNNNNNTCC 2 cut(s) 933, 965
AluBI AGCT 5 cut(s) 51, 473, 560, 662, 725
AluI AGCT 5 cut(s) 51, 473, 560, 662, 725
Alw21I GWGCWC 2 cut(s) 366, 727
Alw26I GTCTC 3 cut(s) 492, 516, 860
AlwI GGATC 2 cut(s) 213, 438
Ama87I CYCGRG 1 cut(s) 639
AoxI GGCC 4 cut(s) 3, 109, 151, 253
ApeKI GCWGC 2 cut(s) 473, 557
ApoI RAATTY 3 cut(s) 650, 769, 911
AseI ATTAAT 1 cut(s) 1079
AsiGI ACCGGT 1 cut(s) 394
AspLEI GCGC 6 cut(s) 29, 218, 220, 286, 292, 765
AspS9I GGNCC 7 cut(s) 109, 152, 254, 400, 583, 846, 941
AsuC2I CCSGG 3 cut(s) 134, 640, 641
AvaI CYCGRG 1 cut(s) 639
AvaII GGWCC 4 cut(s) 400, 583, 846, 941
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 289
BanII GRGCYC 2 cut(s) 727, 1015
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 2 cut(s) 366, 727
BbvI GCAGC 2 cut(s) 460, 569
BccI CCATC 2 cut(s) 14, 316
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciT130I CCWGG 3 cut(s) 939, 966, 1044
BclI TGATCA 1 cut(s) 972
BcnI CCSGG 3 cut(s) 134, 640, 641
BcoDI GTCTC 3 cut(s) 492, 516, 860
BfoI RGCGCY 3 cut(s) 30, 287, 293
BfuAI ACCTGC 2 cut(s) 409, 788
BisI GCNGC 3 cut(s) 127, 474, 558
BlsI GCNGC 3 cut(s) 128, 475, 559
Bme1390I CCNGG 6 cut(s) 134, 640, 641, 939, 966, 1044
Bme18I GGWCC 4 cut(s) 400, 583, 846, 941
BmeT110I CYCGRG 1 cut(s) 639
BmgT120I GGNCC 7 cut(s) 109, 152, 254, 400, 583, 846, 941
BmiI GGNNCC 4 cut(s) 256, 291, 1014, 1063
BmrFI CCNGG 6 cut(s) 134, 640, 641, 939, 966, 1044
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 5 cut(s) 90, 189, 556, 822, 922
BmuI ACTGGG 1 cut(s) 766
BpiI GAAGAC 1 cut(s) 756
BplI GAGNNNNNCTC 4 cut(s) 639, 671, 857, 889
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 1013
BpuMI CCSGG 3 cut(s) 134, 640, 641
BsaBI GATNNNNATC 3 cut(s) 429, 546, 836
BsaHI GRCGYC 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 639, 965, 1043
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 966
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 761
Bse3DI GCAATG 1 cut(s) 483
Bse8I GATNNNNATC 3 cut(s) 429, 546, 836
BseBI CCWGG 3 cut(s) 939, 966, 1044
BseDI CCNNGG 3 cut(s) 639, 965, 1043
BseGI GGATG 1 cut(s) 975
BseJI GATNNNNATC 3 cut(s) 429, 546, 836
BseLI CCNNNNNNNGG 2 cut(s) 133, 966
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 3 cut(s) 670, 740, 807
BseNI ACTGG 1 cut(s) 761
BsePI GCGCGC 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 460, 569
BseYI CCCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 437
Bsh1236I CGCG 2 cut(s) 218, 808
BshFI GGCC 4 cut(s) 5, 111, 153, 255
BshNI GGYRCC 1 cut(s) 289
BshTI ACCGGT 1 cut(s) 394
BsiHKAI GWGCWC 2 cut(s) 366, 727
BsiHKCI CYCGRG 1 cut(s) 639
BsiSI CCGG 3 cut(s) 134, 395, 640
BslI CCNNNNNNNGG 2 cut(s) 133, 966
BsmAI GTCTC 3 cut(s) 492, 516, 860
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 4 cut(s) 5, 111, 153, 255
BsoBI CYCGRG 1 cut(s) 639
Bsp1286I GDGCHC 3 cut(s) 366, 727, 1015
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 4 cut(s) 205, 430, 568, 972
BspACI CCGC 3 cut(s) 124, 127, 243
BspANI GGCC 4 cut(s) 5, 111, 153, 255
BspCNI CTCAG 3 cut(s) 669, 739, 806
BspFNI CGCG 2 cut(s) 218, 808
BspLI GGNNCC 4 cut(s) 256, 291, 1014, 1063
BspMI ACCTGC 2 cut(s) 409, 788
BspPI GGATC 2 cut(s) 213, 438
BspQI GCTCTTC 1 cut(s) 715
BspT107I GGYRCC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 394
BsrGI TGTACA 1 cut(s) 513
BsrI ACTGG 1 cut(s) 761
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 3 cut(s) 639, 965, 1043
BssHII GCGCGC 1 cut(s) 216
BssMI GATC 4 cut(s) 205, 430, 568, 972
BssNI GRCGYC 1 cut(s) 290
Bst2UI CCWGG 3 cut(s) 939, 966, 1044
Bst4CI ACNGT 5 cut(s) 95, 251, 351, 415, 921
Bst6I CTCTTC 1 cut(s) 715
BstACI GRCGYC 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 415
BstAUI TGTACA 1 cut(s) 513
BstC8I GCNNGC 2 cut(s) 218, 288
BstDEI CTNAG 4 cut(s) 575, 656, 726, 793
BstF5I GGATG 1 cut(s) 975
BstFNI CGCG 2 cut(s) 218, 808
BstH2I RGCGCY 3 cut(s) 30, 287, 293
BstHHI GCGC 6 cut(s) 29, 218, 220, 286, 292, 765
BstKTI GATC 4 cut(s) 208, 433, 571, 975
BstMAI GTCTC 3 cut(s) 492, 516, 860
BstMBI GATC 4 cut(s) 205, 430, 568, 972
BstMWI GCNNNNNNNGC 2 cut(s) 415, 452
BstNI CCWGG 3 cut(s) 939, 966, 1044
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 6 cut(s) 132, 638, 639, 937, 964, 1042
BstUI CGCG 2 cut(s) 218, 808
BstV1I GCAGC 2 cut(s) 460, 569
BstV2I GAAGAC 1 cut(s) 756
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 4 cut(s) 5, 111, 153, 255
BtsCI GGATG 1 cut(s) 975
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 4 cut(s) 231, 256, 501, 982
BveI ACCTGC 2 cut(s) 409, 788
Cac8I GCNNGC 2 cut(s) 218, 288
CfoI GCGC 6 cut(s) 29, 218, 220, 286, 292, 765
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 7 cut(s) 109, 152, 254, 400, 583, 846, 941
Cfr9I CCCGGG 1 cut(s) 639
CseI GACGC 2 cut(s) 797, 814
Csp6I GTAC 1 cut(s) 514
CspAI ACCGGT 1 cut(s) 394
CviAII CATG 5 cut(s) 85, 265, 379, 461, 766
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 4 cut(s) 575, 656, 726, 793
DinI GGCGCC 1 cut(s) 291
DpnI GATC 4 cut(s) 207, 432, 570, 974
DpnII GATC 4 cut(s) 205, 430, 568, 972
DraI TTTAAA 2 cut(s) 774, 898
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 715
EarI CTCTTC 1 cut(s) 715
Ecl136II GAGCTC 1 cut(s) 725
Eco24I GRGCYC 2 cut(s) 727, 1015
Eco47I GGWCC 4 cut(s) 400, 583, 846, 941
Eco53kI GAGCTC 1 cut(s) 725
Eco57I CTGAAG 3 cut(s) 255, 425, 1002
Eco88I CYCGRG 1 cut(s) 639
EcoICRI GAGCTC 1 cut(s) 725
EcoRII CCWGG 3 cut(s) 937, 964, 1042
EcoT22I ATGCAT 3 cut(s) 105, 380, 889
EcoT38I GRGCYC 2 cut(s) 727, 1015
EgeI GGCGCC 1 cut(s) 291
EheI GGCGCC 1 cut(s) 291
FaeI CATG 5 cut(s) 88, 268, 382, 464, 769
FatI CATG 5 cut(s) 84, 264, 378, 460, 765
FauNDI CATATG 2 cut(s) 105, 607
FbaI TGATCA 1 cut(s) 972
Fnu4HI GCNGC 3 cut(s) 127, 474, 558
FokI GGATG 1 cut(s) 982
FriOI GRGCYC 2 cut(s) 727, 1015
Fsp4HI GCNGC 3 cut(s) 127, 474, 558
GlaI GCGC 6 cut(s) 28, 217, 219, 285, 291, 764
GluI GCNGC 3 cut(s) 127, 474, 558
GsaI CCCAGC 1 cut(s) 33
HaeII RGCGCY 3 cut(s) 30, 287, 293
HaeIII GGCC 4 cut(s) 5, 111, 153, 255
HapII CCGG 3 cut(s) 134, 395, 640
HgaI GACGC 2 cut(s) 797, 814
HhaI GCGC 6 cut(s) 29, 218, 220, 286, 292, 765
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 5 cut(s) 88, 268, 382, 464, 769
Hin6I GCGC 6 cut(s) 27, 216, 218, 284, 290, 763
HinP1I GCGC 6 cut(s) 27, 216, 218, 284, 290, 763
HinfI GANTC 4 cut(s) 11, 599, 626, 1027
HpaII CCGG 3 cut(s) 134, 395, 640
Hpy166II GTNNAC 8 cut(s) 354, 400, 514, 516, 603, 667, 907, 1091
Hpy188I TCNGA 4 cut(s) 276, 361, 659, 1021
Hpy188III TCNNGA 3 cut(s) 203, 623, 728
Hpy8I GTNNAC 8 cut(s) 354, 400, 514, 516, 603, 667, 907, 1091
Hpy99I CGWCG 2 cut(s) 280, 361
HpyAV CCTTC 4 cut(s) 274, 327, 714, 1026
HpyCH4III ACNGT 5 cut(s) 95, 251, 351, 415, 921
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 9 cut(s) 103, 180, 378, 418, 455, 476, 488, 611, 887
HpyF10VI GCNNNNNNNGC 2 cut(s) 415, 452
HpyF3I CTNAG 4 cut(s) 575, 656, 726, 793
HpySE526I ACGT 1 cut(s) 356
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 5 cut(s) 88, 268, 382, 464, 769
HspAI GCGC 6 cut(s) 27, 216, 218, 284, 290, 763
KasI GGCGCC 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 972
Kzo9I GATC 4 cut(s) 205, 430, 568, 972
LguI GCTCTTC 1 cut(s) 715
LmnI GCTCC 7 cut(s) 225, 361, 470, 554, 760, 940, 1018
Lsp1109I GCAGC 2 cut(s) 460, 569
LweI GCATC 5 cut(s) 90, 189, 556, 822, 922
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 3 cut(s) 61, 245, 1033
MalI GATC 4 cut(s) 207, 432, 570, 974
MboI GATC 4 cut(s) 205, 430, 568, 972
MboII GAAGA 4 cut(s) 394, 425, 732, 761
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 3 cut(s) 366, 727, 1015
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 564, 650, 699, 769, 911, 1076, 1101
MluI ACGCGT 1 cut(s) 806
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 290
MlyI GAGTC 2 cut(s) 5, 608
MmeI TCCRAC 4 cut(s) 282, 299, 339, 824
MnlI CCTC 7 cut(s) 31, 125, 182, 298, 334, 337, 988
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 3 cut(s) 105, 380, 889
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 773, 897, 1002, 1079
MslI CAYNNNNRTG 3 cut(s) 263, 506, 672
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 134, 395, 640
MspR9I CCNGG 6 cut(s) 134, 640, 641, 939, 966, 1044
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 3 cut(s) 939, 966, 1044
MvnI CGCG 2 cut(s) 218, 808
MwoI GCNNNNNNNGC 2 cut(s) 415, 452
NarI GGCGCC 1 cut(s) 290
NciI CCSGG 3 cut(s) 134, 640, 641
NdeI CATATG 2 cut(s) 105, 607
NdeII GATC 4 cut(s) 205, 430, 568, 972
NlaIII CATG 5 cut(s) 88, 268, 382, 464, 769
NlaIV GGNNCC 4 cut(s) 256, 291, 1014, 1063
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 3 cut(s) 105, 380, 889
NspI RCATGY 1 cut(s) 464
OliI CACNNNNGTG 1 cut(s) 672
PauI GCGCGC 1 cut(s) 216
PciI ACATGT 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 715
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 1091
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 626, 1027
PfoI TCCNGGA 1 cut(s) 937
PinAI ACCGGT 1 cut(s) 394
PkrI GCNGC 3 cut(s) 128, 475, 559
PleI GAGTC 2 cut(s) 5, 607
PluTI GGCGCC 1 cut(s) 293
PpsI GAGTC 2 cut(s) 5, 607
PscI ACATGT 1 cut(s) 460
PshBI ATTAAT 1 cut(s) 1079
PsiI TTATAA 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 727
Psp6I CCWGG 3 cut(s) 937, 964, 1042
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 3 cut(s) 937, 964, 1042
PspN4I GGNNCC 4 cut(s) 256, 291, 1014, 1063
PspPI GGNCC 7 cut(s) 109, 152, 254, 400, 583, 846, 941
PsuI RGATCY 1 cut(s) 430
PteI GCGCGC 1 cut(s) 216
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 3 cut(s) 263, 506, 672
SacI GAGCTC 1 cut(s) 727
SapI GCTCTTC 1 cut(s) 715
SaqAI TTAA 4 cut(s) 773, 897, 1002, 1079
SatI GCNGC 3 cut(s) 127, 474, 558
Sau3AI GATC 4 cut(s) 205, 430, 568, 972
Sau96I GGNCC 7 cut(s) 109, 152, 254, 400, 583, 846, 941
SchI GAGTC 2 cut(s) 5, 608
ScrFI CCNGG 6 cut(s) 134, 640, 641, 939, 966, 1044
SduI GDGCHC 3 cut(s) 366, 727, 1015
SfaNI GCATC 5 cut(s) 90, 189, 556, 822, 922
SfoI GGCGCC 1 cut(s) 291
SinI GGWCC 4 cut(s) 400, 583, 846, 941
SmaI CCCGGG 1 cut(s) 641
SmiMI CAYNNNNRTG 3 cut(s) 263, 506, 672
SmlI CTYRAG 1 cut(s) 992
SmoI CTYRAG 1 cut(s) 992
Sse9I AATT 7 cut(s) 564, 650, 699, 769, 911, 1076, 1101
SsiI CCGC 3 cut(s) 124, 127, 243
SspDI GGCGCC 1 cut(s) 289
SstI GAGCTC 1 cut(s) 727
StyD4I CCNGG 6 cut(s) 132, 638, 639, 937, 964, 1042
TaaI ACNGT 5 cut(s) 95, 251, 351, 415, 921
TaiI ACGT 1 cut(s) 359
TaqI TCGA 5 cut(s) 9, 90, 117, 372, 571
TasI AATT 7 cut(s) 564, 650, 699, 769, 911, 1076, 1101
TatI WGTACW 1 cut(s) 513
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 2 cut(s) 626, 1027
Tru1I TTAA 4 cut(s) 773, 897, 1002, 1079
Tru9I TTAA 4 cut(s) 773, 897, 1002, 1079
TscAI CASTG 4 cut(s) 238, 256, 508, 982
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 473, 557
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 188, 395, 782
TspGWI ACGGA 1 cut(s) 431
TspMI CCCGGG 1 cut(s) 639
TspRI CASTG 4 cut(s) 238, 256, 508, 982
VpaK11BI GGWCC 4 cut(s) 400, 583, 846, 941
VspI ATTAAT 1 cut(s) 1079
XapI RAATTY 3 cut(s) 650, 769, 911
XceI RCATGY 1 cut(s) 464
XmaI CCCGGG 1 cut(s) 639
Zsp2I ATGCAT 3 cut(s) 105, 380, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.